View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14372_low_11 (Length: 253)
Name: NF14372_low_11
Description: NF14372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14372_low_11 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 24400652 - 24400400
Alignment:
| Q |
1 |
tgcacaagaaaacaaggcaagtggccctccaatccatcctaattgagaaatactccatgccaaagacaaaacaccagaaccaataacagctgtgatgata |
100 |
Q |
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| T |
24400652 |
tgcacaagaaaacaaggcaagtggccctccaatccatcctaattgagaaatactccatgccaaagacaaaacaccagaaccaataacagctgtgatgata |
24400553 |
T |
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| Q |
101 |
tgagccacagcactttttacatttcctgcagaatttatgtcgaataaaacttcagtattcaaattcaagtatatgaaaatcaattggttatgatgctata |
200 |
Q |
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| T |
24400552 |
tgagccacagcactttttacatttcctgcagaatttatcccgaataaaacttcagtattcaaattcaagtatatgaaaatcaattggttatgatgctata |
24400453 |
T |
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| Q |
201 |
gagaattttacctgtccttttgggacgtccatcatcatcataaatatcagaat |
253 |
Q |
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| T |
24400452 |
gagaattttacctgtccttttggcacgtccgtcatcatcataaatatcagaat |
24400400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 24377809 - 24377566
Alignment:
| Q |
1 |
tgcacaagaaaacaaggcaagtggccctccaatccatcctaattgagaaatactccatgccaaagacaaaacaccagaaccaataacagctgtgatgata |
100 |
Q |
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||||||||||| || ||||||||||||||||||||||||| ||||| | ||||||||||||| |||||||||||||| || |||||| | ||||||||| |
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| T |
24377809 |
tgcacaagaaagtaatgcaagtggccctccaatccatcctagttgagcagtactccatgccaatgacaaaacaccagacccgataacaccagtgatgata |
24377710 |
T |
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| Q |
101 |
tgagccacagcactttttacatttcctgcagaatttat-gtcgaataaaacttcagtattcaaattcaagtatatgaaaatcaattggttatgatgctat |
199 |
Q |
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| T |
24377709 |
tgagccaaggcactctttaaatttcctgcagaatttgtagcaggataaaagcttagtattcaaatgcatgcatatgaaaatgaattggttatgaagcaat |
24377610 |
T |
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| Q |
200 |
agagaattttacctgtccttttgggacgtccatcatcatcataa |
243 |
Q |
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| T |
24377609 |
ttagaattttaccagtccttttggcatgtccatcatcatcataa |
24377566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 24413101 - 24412972
Alignment:
| Q |
1 |
tgcacaagaaaacaaggcaagtggccctccaatccatcctaattgagaaatactccatgccaaagacaaaacaccagaaccaataacagctgtgatgata |
100 |
Q |
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||||||| ||| ||||| || ||| |||||||||||||||||||||| | ||||||||||||| |||| |||||||||||||||||| |||||||||||| |
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| T |
24413101 |
tgcacaacaaagcaaggtaactggtcctccaatccatcctaattgagcagtactccatgccaatgacagaacaccagaaccaataactgctgtgatgata |
24413002 |
T |
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| Q |
101 |
tgagccacagcactttttacatttcctgca |
130 |
Q |
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| T |
24413001 |
tgagccacagcactctttaaatttcctgca |
24412972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 24420940 - 24421069
Alignment:
| Q |
1 |
tgcacaagaaaacaaggcaagtggccctccaatccatcctaattgagaaatactccatgccaaagacaaaacaccagaaccaataacagctgtgatgata |
100 |
Q |
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||||||| ||| ||||| || ||| |||||||||||||||||||||| | ||||||||||||| |||| |||||||||||||||||| |||||||||||| |
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| T |
24420940 |
tgcacaacaaagcaaggtaactggtcctccaatccatcctaattgagcagtactccatgccaatgacagaacaccagaaccaataactgctgtgatgata |
24421039 |
T |
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| Q |
101 |
tgagccacagcactttttacatttcctgca |
130 |
Q |
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| T |
24421040 |
tgagccacagcactctttaaatttcctgca |
24421069 |
T |
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