View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14372_low_16 (Length: 220)

Name: NF14372_low_16
Description: NF14372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14372_low_16
NF14372_low_16
[»] chr1 (12 HSPs)
chr1 (1-216)||(10979120-10979335)
chr1 (1-216)||(10903225-10903440)
chr1 (1-216)||(10914385-10914600)
chr1 (1-212)||(11028710-11028923)
chr1 (8-216)||(11005121-11005329)
chr1 (1-216)||(11010686-11010901)
chr1 (8-203)||(10993818-10994013)
chr1 (1-212)||(11032977-11033188)
chr1 (101-214)||(10974142-10974255)
chr1 (1-212)||(11007524-11007735)
chr1 (9-105)||(10932774-10932870)
chr1 (8-115)||(10901456-10901563)


Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 10979120 - 10979335
Alignment:
Q  1 tctccaacactttatccattgaaggacggtcgtcgggttttgtctgtatacaccacaaagccacaatcatcattttctttgccaattttatttcctgatc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10979120 tctccaacactttatccattgaaggacggtcgtcgggttttgtctgtatacaccacaaagccacaatcatcattttctttgccaattttatttcctgatc 10979219  T
Q  101 tgtgtcattttcaatcgtcacttcccttccatcatgtaatcgatcatatatccaaaaagggaaataaatttggctagattgctcagccattgcattcaag 200  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10979220 tgtgtcattttcaatcgttacttcccttccatcatgtaatcgatcatatatccaaaaagggaaataaatttggctagattgctcagccattgcattcaag 10979319  T
Q  201 ttcctccttctacttg 216  Q
    ||||||||||||||||    
T  10979320 ttcctccttctacttg 10979335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 10903225 - 10903440
Alignment:
Q  1 tctccaacactttatccattgaaggacggtcgtcgggttttgtctgtatacaccacaaagccacaatcatcattttctttgccaattttatttcctgatc 100  Q
    ||||||| |||||||||||||||||||| || ||||||||||| ||||||||||||||||||||  |||||||||||||||||||||| |||||||||||    
T  10903225 tctccaaaactttatccattgaaggacgatcctcgggttttgtttgtatacaccacaaagccacggtcatcattttctttgccaatttcatttcctgatc 10903324  T
Q  101 tgtgtcattttcaatcgtcacttcccttccatcatgtaatcgatcatatatccaaaaagggaaataaatttggctagattgctcagccattgcattcaag 200  Q
    ||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||| ||||||||||    
T  10903325 tgtgtcattttcaatagttacttcccttccatcatgtaatcgatcataaatccaaaaagggaaataaatttggctagattgttcggccaatgcattcaag 10903424  T
Q  201 ttcctccttctacttg 216  Q
    ||| ||||||||||||    
T  10903425 ttcttccttctacttg 10903440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 10914385 - 10914600
Alignment:
Q  1 tctccaacactttatccattgaaggacggtcgtcgggttttgtctgtatacaccacaaagccacaatcatcattttctttgccaattttatttcctgatc 100  Q
    ||||||| ||||| |||||||||||||| || || |||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||    
T  10914385 tctccaaaactttttccattgaaggacgatcctctggttttgtttgtatacaccacaaagctacaatcatcattttctttgccaatttcatttcctgatc 10914484  T
Q  101 tgtgtcattttcaatcgtcacttcccttccatcatgtaatcgatcatatatccaaaaagggaaataaatttggctagattgctcagccattgcattcaag 200  Q
    ||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||  |||||||| ||||||| |||||||||     
T  10914485 tgtgtcattttcaatagttacttcccttccatcatgtaatcgatcataaatccaaaaagggaaataaatttcactagattgatcagccaatgcattcaaa 10914584  T
Q  201 ttcctccttctacttg 216  Q
    ||| ||||||| ||||    
T  10914585 ttcttccttctgcttg 10914600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 11028923 - 11028710
Alignment:
Q  1 tctccaacactttatccattgaaggacggtcgtcgggttttgtctgtatacaccacaaagccacaatcatcattttctttgccaattttatttcctgatc 100  Q
    ||||||| |||||||||||||||||||| || || |||||||| |||||||||||||||||| || |||||||||||||||||||||| |||||||||||    
T  11028923 tctccaaaactttatccattgaaggacgatcctctggttttgtttgtatacaccacaaagccgcagtcatcattttctttgccaatttcatttcctgatc 11028824  T
Q  101 tgtgtcattttcaatcg--tcacttcccttccatcatgtaatcgatcatatatccaaaaagggaaataaatttggctagattgctcagccattgcattca 198  Q
    ||||||||||||||| |    ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||| |||||||     
T  11028823 tgtgtcattttcaatagatatacttcccttccatcatgtaatcgatcataaatccagaaagggaaataaatttggctagattgttcagccaatgcattct 11028724  T
Q  199 agttcctccttcta 212  Q
    | ||| ||||||||    
T  11028723 aattcttccttcta 11028710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 8 - 216
Target Start/End: Complemental strand, 11005329 - 11005121
Alignment:
Q  8 cactttatccattgaaggacggtcgtcgggttttgtctgtatacaccacaaagccacaatcatcattttctttgccaattttatttcctgatctgtgtca 107  Q
    ||||||||||||||||||||| ||  | |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| | ||||||||||    
T  11005329 cactttatccattgaaggacgatcacctggttttgtctgtatacaccataaagccacaatcatcattttctttgccaatttcatttcttcatctgtgtca 11005230  T
Q  108 ttttcaatcgtcacttcccttccatcatgtaatcgatcatatatccaaaaagggaaataaatttggctagattgctcagccattgcattcaagttcctcc 207  Q
    || ||||| || ||||| ||||||||||||||  || |||| ||||||||||||||||||||||||| |||||||||||||| || |||||||||| |||    
T  11005229 ttctcaattgttacttcacttccatcatgtaactgaccataaatccaaaaagggaaataaatttggcaagattgctcagccaatggattcaagttcttcc 11005130  T
Q  208 ttctacttg 216  Q
    |||||||||    
T  11005129 ttctacttg 11005121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 11010686 - 11010901
Alignment:
Q  1 tctccaacactttatccattgaaggacggtcgtcgggttttgtctgtatacaccacaaagccacaatcatcattttctttgccaattttatttcctgatc 100  Q
    ||||||| |||||||||||||||||||| || || |||||||||||||||||||| || ||||||||||||||||||||||| |  || |||||||||||    
T  11010686 tctccaaaactttatccattgaaggacgatcatcaggttttgtctgtatacaccataacgccacaatcatcattttctttgctagcttcatttcctgatc 11010785  T
Q  101 tgtgtcattttcaatcgtcacttcccttccatcatgtaatcgatcatatatccaaaaagggaaataaatttggctagattgctcagccattgcattcaag 200  Q
    |||||| || ||||| || ||||| ||||||||||| |||  |||||| ||||||||||| |||||||||||||| ||||||||||||| ||||||||||    
T  11010786 tgtgtcgttctcaattgttacttcacttccatcatgaaatttatcataaatccaaaaaggaaaataaatttggctggattgctcagccaatgcattcaag 11010885  T
Q  201 ttcctccttctacttg 216  Q
    ||| ||||||||||||    
T  11010886 ttcttccttctacttg 11010901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 8 - 203
Target Start/End: Complemental strand, 10994013 - 10993818
Alignment:
Q  8 cactttatccattgaaggacggtcgtcgggttttgtctgtatacaccacaaagccacaatcatcattttctttgccaattttatttcctgatctgtgtca 107  Q
    ||||||||||||||||||||| ||    ||||||||||| |||||||| || ||||||||||||||||||||||||||||| ||||| | ||||||||||    
T  10994013 cactttatccattgaaggacgatcactaggttttgtctgaatacaccataatgccacaatcatcattttctttgccaatttcatttcttcatctgtgtca 10993914  T
Q  108 ttttcaatcgtcacttcccttccatcatgtaatcgatcatatatccaaaaagggaaataaatttggctagattgctcagccattgcattcaagttc 203  Q
    || ||||| || ||||| ||||||||||||||  ||||||| ||||||||||| |||||||||||||||||||||||||| | |||||||||||||    
T  10993913 ttctcaattgttacttcacttccatcatgtaactgatcataaatccaaaaaggaaaataaatttggctagattgctcagctaatgcattcaagttc 10993818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 11032977 - 11033188
Alignment:
Q  1 tctccaacactttatccattgaaggacggtcgtcgggttttgtctgtatacaccacaaagccacaatcatcattttctttgccaattttatttcctgatc 100  Q
    ||||||||||||||||||||| |||||| ||    ||||| | ||| ||||||||||||||||| ||||||||||||||||||||||| ||||| ||||     
T  11032977 tctccaacactttatccattggaggacgatcactaggtttcgcctgaatacaccacaaagccactatcatcattttctttgccaatttcatttcatgatt 11033076  T
Q  101 tgtgtcattttcaatcgtcacttcccttccatcatgtaatcgatcatatatccaaaaagggaaataaatttggctagattgctcagccattgcattcaag 200  Q
    ||| |||||   ||| |||| |||||||||||| |||||  ||||||| | |||||||||||||||||| ||||| ||||| ||||||| ||||||||||    
T  11033077 tgtatcattcagaattgtcatttcccttccatcttgtaactgatcataaacccaaaaagggaaataaatctggcttgattgatcagccaatgcattcaag 11033176  T
Q  201 ttcctccttcta 212  Q
    ||| ||||||||    
T  11033177 ttcttccttcta 11033188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 101 - 214
Target Start/End: Original strand, 10974142 - 10974255
Alignment:
Q  101 tgtgtcattttcaatcgtcacttcccttccatcatgtaatcgatcatatatccaaaaagggaaataaatttggctagattgctcagccattgcattcaag 200  Q
    ||||||||||||||| |  ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| || |||| |||||||||     
T  10974142 tgtgtcattttcaatagatacttcccttccatcatgtaatcgatcataaatccagaaagggaaataaatttggctagattgatcggccaatgcattcaaa 10974241  T
Q  201 ttcctccttctact 214  Q
    ||| ||||||||||    
T  10974242 ttcttccttctact 10974255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 11007524 - 11007735
Alignment:
Q  1 tctccaacactttatccattgaaggacggtcgtcgggttttgtctgtatacaccacaaagccacaatcatcattttctttgccaattttatttcctgatc 100  Q
    ||||||||||||||||||||| |||||| ||    ||||| |  || ||||||||||||||||| ||||||||||||||||||||||| || || ||||     
T  11007524 tctccaacactttatccattggaggacgatcactaggtttcgcttgaatacaccacaaagccactatcatcattttctttgccaatttcatctcatgatt 11007623  T
Q  101 tgtgtcattttcaatcgtcacttcccttccatcatgtaatcgatcatatatccaaaaagggaaataaatttggctagattgctcagccattgcattcaag 200  Q
    |||  |||| ||||| || | ||| |||||||| |||||  ||||||| | |||||||||||||||||  |||||||||||  |||||| | ||| ||||    
T  11007624 tgtagcattctcaattgttatttctcttccatcttgtaactgatcataaacccaaaaagggaaataaacctggctagattgaccagccaatacatccaag 11007723  T
Q  201 ttcctccttcta 212  Q
    ||| ||||||||    
T  11007724 ttcttccttcta 11007735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 9 - 105
Target Start/End: Original strand, 10932774 - 10932870
Alignment:
Q  9 actttatccattgaaggacggtcgtcgggttttgtctgtatacaccacaaagccacaatcatcattttctttgccaattttatttcctgatctgtgt 105  Q
    ||||| |||||||||||||| || ||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  10932774 actttttccattgaaggacgatcctcgggatttgtttgtatacaccacaaagccacgatcatcattttctttgccaatttcatttcctgatctgtgt 10932870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 8 - 115
Target Start/End: Original strand, 10901456 - 10901563
Alignment:
Q  8 cactttatccattgaaggacggtcgtcgggttttgtctgtatacaccacaaagccacaatcatcattttctttgccaattttatttcctgatctgtgtca 107  Q
    ||||||||||||||||||||| ||    |||||||||||  ||||||| || |||||||||||| |||||||||||||||| ||||| | ||||||||||    
T  10901456 cactttatccattgaaggacgatcactaggttttgtctgagtacaccataatgccacaatcatcgttttctttgccaatttcatttcttcatctgtgtca 10901555  T
Q  108 ttttcaat 115  Q
    || |||||    
T  10901556 ttctcaat 10901563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University