View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14372_low_5 (Length: 447)
Name: NF14372_low_5
Description: NF14372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14372_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 4 - 363
Target Start/End: Complemental strand, 36956423 - 36956064
Alignment:
| Q |
4 |
aaaatctcaaccgcaacaaaaatcaatgccataaccagaaacacatttgccaaccaagtaagttcactaataacagtgtagagaccagcaatgaaagcaa |
103 |
Q |
| |
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|||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| |
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| T |
36956423 |
aaaatcacaaccgcaacaaaaatcagagccataaccagaaacacatttgccaaccaattaagttcactaataacagtgtacagaccagcaatgaaagcaa |
36956324 |
T |
|
| Q |
104 |
aagataatgaaatgagagcgattccaagtagcggcataacgattttgagagtaaaagtcagcaattcagttaatccaagtgttgcccaaaagagtatgat |
203 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |
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| T |
36956323 |
aagataatgaaatgagagcgattccaagaagcggcacaacaattttgagagtaaaagttaccaattcagttaatccaagtgttgcccaaaagagtatgat |
36956224 |
T |
|
| Q |
204 |
ggtagcactaatggaacaaaagaatgatattgtgatgaagataatgaatgcttgaaacattgcatgacaaagattgtgtgcttttccttctgattcacct |
303 |
Q |
| |
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|||||||||||| |||| || |||||||||||||||||||||||||| | || |||||||||||||| |||||||||||||||||||||| ||||||| |
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| T |
36956223 |
ggtagcactaattgaactgaacaatgatattgtgatgaagataatgaaaacatggaacattgcatgacatagattgtgtgcttttccttctgcttcacct |
36956124 |
T |
|
| Q |
304 |
ggaacagcaaaacatgctgctactgatgctgtgattataagtgttgaaacaattgtgagg |
363 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36956123 |
ggaacagctaaacatgctgctactgatgctgtgattataagtgttgaaacaattgtgagg |
36956064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 6 - 353
Target Start/End: Complemental strand, 36948345 - 36947998
Alignment:
| Q |
6 |
aatctcaaccgcaacaaaaatcaatgccataaccagaaacacatttgccaaccaagtaagttcactaataacagtgtagagaccagcaatgaaagcaaaa |
105 |
Q |
| |
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|||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||| |
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| T |
36948345 |
aatctcaaccacaacaaaaatcaatgtcataaccagaaacacatttgccaaccaagtaagttcactgataacagtgtagaggccagcaatgaaagccaaa |
36948246 |
T |
|
| Q |
106 |
gataatgaaatgagagcgattccaagtagcggcataacgattttgagagtaaaagtcagcaattcagttaatccaagtgttgcccaaaagagtatgatgg |
205 |
Q |
| |
|
|| | ||| ||||||||||||||||| | |||||||| ||||| |||| || ||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
36948245 |
gacagtgagatgagagcgattccaagaattggcataacaattttcagagagaatttcaccaattcagttaatccaagtgttgcccaaaagagtatgataa |
36948146 |
T |
|
| Q |
206 |
tagcactaatggaacaaaagaatgatattgtgatgaagataatgaatgcttgaaacattgcatgacaaagattgtgtgcttttccttctgattcacctgg |
305 |
Q |
| |
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||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||| |||| ||||||||| |
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| T |
36948145 |
tagaactaatggaactgaataatgatattgtgatgaagataatgaatgcttgaaacattgcatgacataggttgtttgcttttccatctgcttcacctgg |
36948046 |
T |
|
| Q |
306 |
aacagcaaaacatgctgctactgatgctgtgattataagtgttgaaac |
353 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| |||||||| |
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|
| T |
36948045 |
aacagcaaaacatgctgctactgatgcagtgattataagggttgaaac |
36947998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 1 - 359
Target Start/End: Complemental strand, 36935572 - 36935214
Alignment:
| Q |
1 |
aacaaaatctcaaccgcaacaaaaatcaatgccataaccagaaacacatttgccaaccaagtaagttcactaataacagtgtagagaccagcaatgaaag |
100 |
Q |
| |
|
||||||||| |||| || |||||||||| ||||||||||||||||||||| | ||||| | |||||||| |||||||||||||||||||| ||||||| |
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|
| T |
36935572 |
aacaaaatcacaacggcgacaaaaatcagtgccataaccagaaacacattggacaaccgacgtagttcactgataacagtgtagagaccagccatgaaag |
36935473 |
T |
|
| Q |
101 |
caaaagataatgaaatgagagcgattccaagtagcggcataacgattttgagagtaaaagtcagcaattcagttaatccaagtgttgcccaaaagagtat |
200 |
Q |
| |
|
| |||||||||| ||| |||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||| |||||||||||||||||| |
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|
| T |
36935472 |
ccaaagataatgcaataagagcgattccaagaagcggcataacgattttgagaggtaaagtcagcaattcagttaacccaaatgttgcccaaaagagtat |
36935373 |
T |
|
| Q |
201 |
gatggtagcactaatggaacaaaagaatgatattgtgatgaagataatgaatgcttgaaacattgcatgacaaagattgtgtgcttttccttctgattca |
300 |
Q |
| |
|
|||||||||||||||||||| || ||||||| |||||||||||||||||| || |||||||||| |||||| |||||||||||||||||||||| |||| |
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|
| T |
36935372 |
gatggtagcactaatggaactgaacaatgatactgtgatgaagataatgaaagcatgaaacattgtatgacatagattgtgtgcttttccttctgcttca |
36935273 |
T |
|
| Q |
301 |
cctggaacagcaaaacatgctgctactgatgctgtgattataagtgttgaaacaattgt |
359 |
Q |
| |
|
| |||||| || ||||||||||||||||| || |||||||||||||||||||||||||| |
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|
| T |
36935272 |
catggaacggctaaacatgctgctactgaagcagtgattataagtgttgaaacaattgt |
36935214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 52 - 362
Target Start/End: Original strand, 37069660 - 37069970
Alignment:
| Q |
52 |
gccaaccaagtaagttcactaataacagtgtagagaccagcaatgaaagcaaaagataatgaaatgagagcgattccaagtagcggcataacgattttga |
151 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||| |||||||||||| ||||||| || |||| |||||||| | |
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|
| T |
37069660 |
gccaaccaagtaagttcactgataacagtgtagagaccagtcatgaaagccaaagatagagaaatgagagcggttccaagaagtggcaacacgattttca |
37069759 |
T |
|
| Q |
152 |
gagtaaaagtcagcaattcagttaatccaagtgttgcccaaaagagtatgatggtagcactaatggaacaaaagaatgatattgtgatgaagataatgaa |
251 |
Q |
| |
|
| | ||||||| ||||||||||||||||||| ||||| ||||||||||||| |||| ||||||||||| || |||||||||||||||||||||||||| |
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| T |
37069760 |
gtgagaaagtcaccaattcagttaatccaagttttgccaaaaagagtatgatagtagaactaatggaactgaacaatgatattgtgatgaagataatgaa |
37069859 |
T |
|
| Q |
252 |
tgcttgaaacattgcatgacaaagattgtgtgcttttccttctgattcacctggaacagcaaaacatgctgctactgatgctgtgattataagtgttgaa |
351 |
Q |
| |
|
||||| |||||||||||||| || |||| ||||||||| || | ||||||||||||||||||||||||||||||||| || |||||||||||||||||| |
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|
| T |
37069860 |
agcttggaacattgcatgacataggttgtttgcttttccatccgcttcacctggaacagcaaaacatgctgctactgaagcagtgattataagtgttgaa |
37069959 |
T |
|
| Q |
352 |
acaattgtgag |
362 |
Q |
| |
|
|| | |||||| |
|
|
| T |
37069960 |
accaatgtgag |
37069970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 36 - 362
Target Start/End: Original strand, 37079404 - 37079730
Alignment:
| Q |
36 |
aaccagaaacacatttgccaaccaagtaagttcactaataacagtgtagagaccagcaatgaaagcaaaagataatgaaatgagagcgattccaagtagc |
135 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| || ||||| ||||||| ||| | ||||||||||||||| || |
|
|
| T |
37079404 |
aaccagaaacacatttgccaaccaagtaagttcactgataacagtgtagagtccagccataaaagccaaagatagtgagacgagagcgattccaagaagt |
37079503 |
T |
|
| Q |
136 |
ggcataacgattttgagagtaaaagtcagcaattcagttaatccaagtgttgcccaaaagagtatgatggtagcactaatggaacaaaagaatgatattg |
235 |
Q |
| |
|
||||| || ||||| |||| ||||||| |||||||| || |||||| ||||||||||||||||||| |||| ||||||||||| || |||||||||| |
|
|
| T |
37079504 |
ggcatcacaattttcagagagaaagtcaccaattcaggtattccaagctttgcccaaaagagtatgatagtagaactaatggaactgaacaatgatattg |
37079603 |
T |
|
| Q |
236 |
tgatgaagataatgaatgcttgaaacattgcatgacaaagattgtgtgcttttccttctgattcacctggaacagcaaaacatgctgctactgatgctgt |
335 |
Q |
| |
|
||||||| |||||||| | || |||||||||||||| || |||| ||||||||| || | ||||||||||||||||||||||||||||||||| || || |
|
|
| T |
37079604 |
tgatgaatataatgaaaacatggaacattgcatgacataggttgtttgcttttccatccgcttcacctggaacagcaaaacatgctgctactgaagcagt |
37079703 |
T |
|
| Q |
336 |
gattataagtgttgaaacaattgtgag |
362 |
Q |
| |
|
||||||||| |||||||| | |||||| |
|
|
| T |
37079704 |
gattataagggttgaaaccaatgtgag |
37079730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 303 - 353
Target Start/End: Complemental strand, 36971718 - 36971668
Alignment:
| Q |
303 |
tggaacagcaaaacatgctgctactgatgctgtgattataagtgttgaaac |
353 |
Q |
| |
|
||||||| |||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
36971718 |
tggaacaccaaaacatgctgctactgatgcagtgattataagtgttgaaac |
36971668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 6 - 359
Target Start/End: Original strand, 12493403 - 12493756
Alignment:
| Q |
6 |
aatctcaaccgcaacaaaaatcaatgccataaccagaaacacatttgccaaccaagtaagttcactaataacagtgtagagaccagcaatgaaagcaaaa |
105 |
Q |
| |
|
|||| ||||||||| |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |||| ||| |||||||| ||| |
|
|
| T |
12493403 |
aatcacaaccgcaataaaaatcaatgccataaccagagacacatttgacaaccaagtaagttcactaataacagtgtaaagactagccatgaaagccaaa |
12493502 |
T |
|
| Q |
106 |
gataatgaaatgagagcgattccaagtagcggcataacgattttgagagtaaaagtcagcaattcagttaatccaagtgttgcccaaaagagtatgatgg |
205 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||| || ||||||||||||||||| | |||||||||||| |||||||||||||||||||||||||| | |
|
|
| T |
12493503 |
gataacgaaatgagagcgattccaagaagcggcatgaccattttgagagtaaaagttaccaattcagttaacccaagtgttgcccaaaagagtatgatag |
12493602 |
T |
|
| Q |
206 |
tagcactaatggaacaaaagaatgatattgtgatgaagataatgaatgcttgaaacattgcatgacaaagattgtgtgcttttccttctgattcacctgg |
305 |
Q |
| |
|
||||||||||||||| || || ||||||||||||||||||||||| || || |||||||||||||| || |||||||||||||||||| ||||||||| |
|
|
| T |
12493603 |
tagcactaatggaactgaacaacgatattgtgatgaagataatgaaagcatggaacattgcatgacataggctgtgtgcttttccttctgcttcacctgg |
12493702 |
T |
|
| Q |
306 |
aacagcaaaacatgctgctactgatgctgtgattataagtgttgaaacaattgt |
359 |
Q |
| |
|
|||||| ||||||||||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
12493703 |
aacagctaaacatgctgctactgaagcagtgattataagtgttgaaacaattgt |
12493756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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