View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14372_low_8 (Length: 323)

Name: NF14372_low_8
Description: NF14372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14372_low_8
NF14372_low_8
[»] chr3 (1 HSPs)
chr3 (19-312)||(48216945-48217240)


Alignment Details
Target: chr3 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 19 - 312
Target Start/End: Original strand, 48216945 - 48217240
Alignment:
Q  19 gtacagattacacaagtcaaagaaatagaaagataatctaattattaagtaactttatgacatatatgtataaacaaaagacttaacaaaatcaagatga 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  48216945 gtacagattacacaagtcaaagaaatagaaagataatctaattattaagtaactttatgacatat--gtataaacaaaagacttaacaaaatcaagatga 48217042  T
Q  119 accattcatgatttatctacaattctactaaagaacacaactcagcttaatttgttgatagaaaaattgaaaagtttaaa----taaagtgttacaaata 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||    
T  48217043 accattcatgatttatctacaattctactaaagaacacaactcagcttaatttgttgatagaaaaattgaaaagtttaaataattaaagtgttacaaata 48217142  T
Q  215 ttaaatatctaccaaccataaaccacctgtgagtacttgttcttaagccatctgaaactctttctgaaagatcctttgactttaccttcaacagaata 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48217143 ttaaatatctaccaaccataaaccacctgtgagtacttgttcttaagccatctgaaactctttctgaaagatcctttgactttaccttcaacagaata 48217240  T

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