View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14373_low_1 (Length: 492)
Name: NF14373_low_1
Description: NF14373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14373_low_1 |
 | |
|
| [»] chr1 (31 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 337; Significance: 0; HSPs: 31)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 24 - 492
Target Start/End: Complemental strand, 11011383 - 11010915
Alignment:
| Q |
24 |
tcaagatttcatcaatgaagttgtcaccattggtaggattcaccatgttaatgtggtacaccttattggtttttgcgtgcagggttcaaaacgtgttctt |
123 |
Q |
| |
|
||||||||| |||||||||||| |||||||||||||||||||||||||||||||| || || ||||||||||| ||| | |||||||||||||||||| |
|
|
| T |
11011383 |
tcaagattttgtcaatgaagttgctaccattggtaggattcaccatgttaatgtggtgcagctcattggtttttgtgtggaaggttcaaaacgtgttctt |
11011284 |
T |
|
| Q |
124 |
atatatgaattcatgccaaatgggtcactggaaaaatacatattttctcataatgaagagagtaattccttgagttgtgaaaaattgcatgccatttctc |
223 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||||||||||||||||||| |||||| | ||||||| ||||| ||| ||||| || | ||||||| |
|
|
| T |
11011283 |
atatatgaattcatgccaaatggatcacttgaaaaatacatattttctcatacaaaagagaattattccttaagttgcgaacaattgtattcaatttctc |
11011184 |
T |
|
| Q |
224 |
ttggggtggctcgtggcattgagtacttgcataatggatgtgatatgaaaattctacactttgatataaagcctcataacatccttcttgatgaaaattt |
323 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
11011183 |
ttggagtggctcgtggcattgagtacttgcatcatggatgcaatatgaaaattctacactttgatataaagcctcataacattcttcttgatgaaaattt |
11011084 |
T |
|
| Q |
324 |
caatccaaaagtttctgattttggacttgctagactctgtcctacagataaaagcattgtgtcattaactgcagcaagagggaccattggatacatggct |
423 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
11011083 |
caatccaaaagtttctgattttggactagctagactttgtcctacagataaaagcattgtgtcattaactgcagcaagaggaaccattggatatatggcc |
11010984 |
T |
|
| Q |
424 |
cctgaactattctacagaaatgttggcacaatatcttacaaagctgatgtatatagttttgggatgttg |
492 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11010983 |
cctgaactattctacagaaatgttggcacaatatcttacaaagctgatgtatatagttttgggatgttg |
11010915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 22 - 492
Target Start/End: Complemental strand, 10915084 - 10914614
Alignment:
| Q |
22 |
ggtcaagatttcatcaatgaagttgtcaccattggtaggattcaccatgttaatgtggtacaccttattggtttttgcgtgcagggttcaaaacgtgttc |
121 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
10915084 |
ggtcaagattttatcaatgaagttgtcaccatcggtaggattcaccatgttaatgtggcacaccttattggtttttgtgtggagggttcaaaacgtgttc |
10914985 |
T |
|
| Q |
122 |
ttatatatgaattcatgccaaatgggtcactggaaaaatacatattttctcataatgaagagagtaattccttgagttgtgaaaaattgcatgccatttc |
221 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |||||| | ||||||| ||||| ||| ||||| || | ||||| |
|
|
| T |
10914984 |
ttatatatgaattcatgccaaatggatcactcgaaaaatacatattttctcatacaaaagagaattattccttaagttgcgaacaattgtattcaatttc |
10914885 |
T |
|
| Q |
222 |
tcttggggtggctcgtggcattgagtacttgcataatggatgtgatatgaaaattctacactttgatataaagcctcataacatccttcttgatgaaaat |
321 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10914884 |
tcttggagtggctcgtggcattgagtacttgcacaatggatgcaatatgaaaattctacactttgatataaagcctcataacatccttcttgatgaaaat |
10914785 |
T |
|
| Q |
322 |
ttcaatccaaaagtttctgattttggacttgctagactctgtcctacagataaaagcattgtgtcattaactgcagcaagagggaccattggatacatgg |
421 |
Q |
| |
|
||||||||||||||||||||||||||||| || || || | |||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||| |
|
|
| T |
10914784 |
ttcaatccaaaagtttctgattttggactagccaggctttctcctacagataaaagcattgtgtcattaactgcagcaagaggaaccatcggatatatgg |
10914685 |
T |
|
| Q |
422 |
ctcctgaactattctacagaaatgttggcacaatatcttacaaagctgatgtatatagttttgggatgttg |
492 |
Q |
| |
|
| |||||| ||||||| |||||||| |||||||||||| ||||||||||||||||||| |||||||||||| |
|
|
| T |
10914684 |
cccctgaattattctatagaaatgtcggcacaatatctcacaaagctgatgtatatagctttgggatgttg |
10914614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 35 - 492
Target Start/End: Complemental strand, 11008210 - 11007753
Alignment:
| Q |
35 |
tcaatgaagttgtcaccattggtaggattcaccatgttaatgtggtacaccttattggtttttgcgtgcagggttcaaaacgtgttcttatatatgaatt |
134 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||| || ||| | ||||||||||||||||| ||||||||||| |
|
|
| T |
11008210 |
tcaatgaagttgctaccattggtaggattcaccatgttaatgtggtacaactcattggtttctgtgtggaaggttcaaaacgtgttctgatatatgaatt |
11008111 |
T |
|
| Q |
135 |
catgccaaatgggtcactggaaaaatacatattttctcataatgaagagagtaattccttgagttgtgaaaaattgcatgccatttctcttggggtggct |
234 |
Q |
| |
|
||||||||||| ||||| |||||||||||||||||||||| ||||||| | ||||||||||||| ||| ||||| || | ||||| ||||| |||||| |
|
|
| T |
11008110 |
tatgccaaatggatcactagaaaaatacatattttctcataccgaagagaattattccttgagttgcgaacaattgtattcaatttcacttggagtggct |
11008011 |
T |
|
| Q |
235 |
cgtggcattgagtacttgcataatggatgtgatatgaaaattctacactttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaag |
334 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11008010 |
cgtggcattgagtacttgcacaatggatgcaatatgaaaattctacactttgacataaagcctcataacatccttcttgatgaaaatttcaatccaaaag |
11007911 |
T |
|
| Q |
335 |
tttctgattttggacttgctagactctgtcctacagataaaagcattgtgtcattaactgcagcaagagggaccattggatacatggctcctgaactatt |
434 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
11007910 |
tttctgattttggacttgctagactttgtcctacagataaaagcattgtgtcattaactgcagcaagaggaaccattggatacatggcccctgaactatt |
11007811 |
T |
|
| Q |
435 |
ctacagaaatgttggcacaatatcttacaaagctgatgtatatagttttgggatgttg |
492 |
Q |
| |
|
|||| ||||||| ||||| |||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
11007810 |
ctaccgaaatgtcggcacgatatcttacaaagctgatgtttatagttttgggatgttg |
11007753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 35 - 492
Target Start/End: Complemental strand, 11033663 - 11033206
Alignment:
| Q |
35 |
tcaatgaagttgtcaccattggtaggattcaccatgttaatgtggtacaccttattggtttttgcgtgcagggttcaaaacgtgttcttatatatgaatt |
134 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||||||||||||||||| || ||||||||||| ||| | ||||||||||||||||| ||||||||||| |
|
|
| T |
11033663 |
tcaatgaagttgctaccattggtaggatccaccatgttaatgtggtacaactcattggtttttgtgtggaaggttcaaaacgtgttctgatatatgaatt |
11033564 |
T |
|
| Q |
135 |
catgccaaatgggtcactggaaaaatacatattttctcataatgaagagagtaattccttgagttgtgaaaaattgcatgccatttctcttggggtggct |
234 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||||||||||||||||| | | ||||||||||||| ||| ||||| || | ||||||||||| |||||| |
|
|
| T |
11033563 |
tatgccaaatggatcactcgaaaaatacatattttctcataatgaagaaaattattccttgagttgcgaacaattgtattcaatttctcttggagtggct |
11033464 |
T |
|
| Q |
235 |
cgtggcattgagtacttgcataatggatgtgatatgaaaattctacactttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaag |
334 |
Q |
| |
|
|| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
11033463 |
cgaggcattgagtacttgcataatggatgcgatatgaaaattctacactttgacataaagcctcataacatccttcttgatgagaatttcaacccaaaag |
11033364 |
T |
|
| Q |
335 |
tttctgattttggacttgctagactctgtcctacagataaaagcattgtgtcattaactgcagcaagagggaccattggatacatggctcctgaactatt |
434 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||| ||||||||||| |
|
|
| T |
11033363 |
tttctgattttggactagctagactttgtcctacagataaaagcattgtcacattaactgcagcaagaggaaccattggatatatggcccctgaactatt |
11033264 |
T |
|
| Q |
435 |
ctacagaaatgttggcacaatatcttacaaagctgatgtatatagttttgggatgttg |
492 |
Q |
| |
|
|||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
11033263 |
ctaccgaaatgtcggcacaatatcttacaaagctgatgtttatagttttgggatgttg |
11033206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 22 - 492
Target Start/End: Original strand, 11004637 - 11005107
Alignment:
| Q |
22 |
ggtcaagatttcatcaatgaagttgtcaccattggtaggattcaccatgttaatgtggtacaccttattggtttttgcgtgcagggttcaaaacgtgttc |
121 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||| || ||||| ||||| ||| ||||||||||||||| || |
|
|
| T |
11004637 |
ggtcaagattttgtcaatgaagttactaccattggtaggattcaccatgtcaatgtggtacaactcattggattttgtgtggagggttcaaaacgtgctc |
11004736 |
T |
|
| Q |
122 |
ttatatatgaattcatgccaaatgggtcactggaaaaatacatattttctcataatgaagagagtaattccttgagttgtgaaaaattgcatgccatttc |
221 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||| || |||||||||||| || ||||||||| |||||||| |||||||||| |
|
|
| T |
11004737 |
ttatatatgaattcatgccaaatggatcactggaaaaatacatattttctcttattgaagagagtaactctttgagttgtaaaaaattgtatgccatttc |
11004836 |
T |
|
| Q |
222 |
tcttggggtggctcgtggcattgagtacttgcataatggatgtgatatgaaaattctacactttgatataaagcctcataacatccttcttgatgaaaat |
321 |
Q |
| |
|
|||||| || ||||| || |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11004837 |
tcttggtgtagctcgaggtattgcatacttgcataatggatgcaatatgaaaattctacactttgatataaagcctcataacatccttcttgatgaaaat |
11004936 |
T |
|
| Q |
322 |
ttcaatccaaaagtttctgattttggacttgctagactctgtcctacagataaaagcattgtgtcattaactgcagcaagagggaccattggatacatgg |
421 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||| | | ||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||| |
|
|
| T |
11004937 |
ttcaatccaaaagtttctgattttggattagctagggtttctcctacagacaaaagcattgtgtccttaactgcagcaagaggaaccattggatacatgg |
11005036 |
T |
|
| Q |
422 |
ctcctgaactattctacagaaatgttggcacaatatcttacaaagctgatgtatatagttttgggatgttg |
492 |
Q |
| |
|
| ||||||||||||||||||||||| |||||||||||| ||||||||||||| ||||| |||||||||||| |
|
|
| T |
11005037 |
cccctgaactattctacagaaatgtcggcacaatatctcacaaagctgatgtctatagctttgggatgttg |
11005107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 34 - 492
Target Start/End: Original strand, 11028234 - 11028692
Alignment:
| Q |
34 |
atcaatgaagttgtcaccattggtaggattcaccatgttaatgtggtacaccttattggtttttgcgtgcagggttcaaaacgtgttcttatatatgaat |
133 |
Q |
| |
|
||||||||| ||| ||||||||||||||||||||| ||||||||||||| || |||||||||| ||| |||||||||||| || |||||||||||||| |
|
|
| T |
11028234 |
atcaatgaaattgctaccattggtaggattcaccatcttaatgtggtacaactcattggtttttatgtggagggttcaaaacatgctcttatatatgaat |
11028333 |
T |
|
| Q |
134 |
tcatgccaaatgggtcactggaaaaatacatattttctcataatgaagagagtaattccttgagttgtgaaaaattgcatgccatttctcttggggtggc |
233 |
Q |
| |
|
| ||||||||||| | ||| |||||||| ||||||||||||| |||||||||||||| ||| |||| |||||||||||||| ||||||||||| || || |
|
|
| T |
11028334 |
ttatgccaaatggattactcgaaaaatatatattttctcatattgaagagagtaattatttgggttgcgaaaaattgcatgctatttctcttggagttgc |
11028433 |
T |
|
| Q |
234 |
tcgtggcattgagtacttgcataatggatgtgatatgaaaattctacactttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaa |
333 |
Q |
| |
|
| | ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
11028434 |
ttgaggcattgagtacttgcataatggatgtaatatgaaaattctacactttgatataaagcctcataacatccttcttgatgagaattttaatccaaaa |
11028533 |
T |
|
| Q |
334 |
gtttctgattttggacttgctagactctgtcctacagataaaagcattgtgtcattaactgcagcaagagggaccattggatacatggctcctgaactat |
433 |
Q |
| |
|
||||||||||| ||||| |||||||| |||||||||| ||| ||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||| |
|
|
| T |
11028534 |
gtttctgatttcggactagctagactttgtcctacaggtaatagcattgtgtcattaactgcagcaagaagaaccattggatacatggcccctgaactat |
11028633 |
T |
|
| Q |
434 |
tctacagaaatgttggcacaatatcttacaaagctgatgtatatagttttgggatgttg |
492 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
11028634 |
tctatagaaatgttggcacaatatcttacaaagctgatgtctatagctttgggatgttg |
11028692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 135 - 492
Target Start/End: Complemental strand, 10974628 - 10974271
Alignment:
| Q |
135 |
catgccaaatgggtcactggaaaaatacatattttctcataatgaagagagtaattccttgagttgtgaaaaattgcatgccatttctcttggggtggct |
234 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10974628 |
catgccaaatgggtaactggaaaaatacatattttctcacattgaagagagtaattccttgagttgtgaaaaattgcatgccatttctcttggggtggct |
10974529 |
T |
|
| Q |
235 |
cgtggcattgagtacttgcataatggatgtgatatgaaaattctacactttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaag |
334 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
10974528 |
cgtggaattgagtactttcataatggatgtgatatgaaaattctacactttgatataaagcctcataccatccttcttgatgaatatttcaatccaaaag |
10974429 |
T |
|
| Q |
335 |
tttctgattttggacttgctagactctgtcctacagataaaagcattgtgtcattaactgcagcaagagggaccattggatacatggctcctgaactatt |
434 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |||||||| || |||||||||||||| |||||||| || |
|
|
| T |
10974428 |
tttctgattttggacttgctagactttgtcctacagataaaagcattgtgccattaactgctgcaagaggaacgattggatacatggcccctgaactgtt |
10974329 |
T |
|
| Q |
435 |
ctacagaaatgttggcacaatatcttacaaagctgatgtatatagttttgggatgttg |
492 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
10974328 |
ctacagaaatattggcacaatatcttacaaagctgatgtctatagctttgggatgttg |
10974271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 18 - 492
Target Start/End: Complemental strand, 10903925 - 10903454
Alignment:
| Q |
18 |
caatggtcaagatttcatcaatgaagttgtcaccattggtaggattcaccatgttaatgtggtacaccttattggtttttgcgtgcagggttcaaaacgt |
117 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||||| |||||||||||||| |||||||||||||| |||||||| ||||| ||| | || ||||| ||| |
|
|
| T |
10903925 |
caatggtcaagattttatcaatgaagttgctaccatcggtaggattcaccacgttaatgtggtacaacttattggattttgtgtggatgggtcaaagcgt |
10903826 |
T |
|
| Q |
118 |
gttcttatatatgaattcatgccaaatgggtcactggaaaaatacatattttctcataatgaagagagtaattccttgagttgtgaaaaattgcatgcca |
217 |
Q |
| |
|
| ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| | || || |||||||||||||||||| ||| |||||| |
|
|
| T |
10903825 |
gctctaatatatgaattcatgccaaatgggtcacttgaaaaatacatattttctcataccaaggattgtttttccttgagttgtgaaaagttgtatgcca |
10903726 |
T |
|
| Q |
218 |
tttctcttggggtggctcgtggcattgagtacttgcataatggatgtgatatgaaaattctacactttgatataaagcctcataacatccttcttgatga |
317 |
Q |
| |
|
||||| ||| |||||||| ||||||| |||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
10903725 |
tttctgttgaagtggctcgaggcattgcgtacttgcataacggatgcaatgtgaaaattctacactttgatataaagcctcataacattcttcttgatga |
10903626 |
T |
|
| Q |
318 |
aaatttcaatccaaaagtttctgattttggacttgctagactctgtcctacagataaaagcattgtgtcattaactgcagcaagagggaccattggatac |
417 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
10903625 |
aagtttcaatccaaaagtttctgattttggacttgccagactttctcctacagataaaagcattgtgtcattaactgcagcaagaggaaccattggata- |
10903527 |
T |
|
| Q |
418 |
atggctcctgaactattctacagaaatgttggcacaatatcttacaaagctgatgtatatagttttgggatgttg |
492 |
Q |
| |
|
|| |||||||| ||||||||||||||||| | |||||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
10903526 |
--tgcccctgaacttttctacagaaatgttggaatgatatcttacaaagctgatgtctatagctttgggatgttg |
10903454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 18 - 269
Target Start/End: Complemental strand, 10984013 - 10983762
Alignment:
| Q |
18 |
caatggtcaagatttcatcaatgaagttgtcaccattggtaggattcaccatgttaatgtggtacaccttattggtttttgcgtgcagggttcaaaacgt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
10984013 |
caatggtcaagatttcatcaatgaagttgtcaccattggtaggattcaccatgttaatgtggtacaccttattggtttttgcgtggagggttcaaaacgt |
10983914 |
T |
|
| Q |
118 |
gttcttatatatgaattcatgccaaatgggtcactggaaaaatacatattttctcataatgaagagagtaattccttgagttgtgaaaaattgcatgcca |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10983913 |
gttcttatatatgaattcatgccaaatgggtcactggaaaaatacatattttctcataatgaagagagtaattccttgagttgtgaaaaattgcatgcca |
10983814 |
T |
|
| Q |
218 |
tttctcttggggtggctcgtggcattgagtacttgcataatggatgtgatat |
269 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10983813 |
tttctcttggggtggctcgtggcattgagtacttgcataatggatgtgatat |
10983762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 267 - 492
Target Start/End: Complemental strand, 10979574 - 10979349
Alignment:
| Q |
267 |
tatgaaaattctacactttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggacttgctagactctgtcct |
366 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
10979574 |
tatgaaaattctacactttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggacttgctagactttgtcct |
10979475 |
T |
|
| Q |
367 |
acagataaaagcattgtgtcattaactgcagcaagagggaccattggatacatggctcctgaactattctacagaaatgttggcacaatatcttacaaag |
466 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10979474 |
acagataaaagctttgtgtcattaactgcagcaagagggaccattggatacatggctcctgaactattctacagaaatgttggcacaatatcttacaaag |
10979375 |
T |
|
| Q |
467 |
ctgatgtatatagttttgggatgttg |
492 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
10979374 |
ctgatgtatatagttttgggatgttg |
10979349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 376 - 492
Target Start/End: Complemental strand, 10901730 - 10901614
Alignment:
| Q |
376 |
agcattgtgtcattaactgcagcaagagggaccattggatacatggctcctgaactattctacagaaatgttggcacaatatcttacaaagctgatgtat |
475 |
Q |
| |
|
|||||||| |||||||| ||||||||||| ||||||||||||||||| |||||| |||||||||||||||| |||||||||||| ||||||||||||| | |
|
|
| T |
10901730 |
agcattgtttcattaacagcagcaagaggaaccattggatacatggcccctgaattattctacagaaatgtcggcacaatatctcacaaagctgatgtct |
10901631 |
T |
|
| Q |
476 |
atagttttgggatgttg |
492 |
Q |
| |
|
|||||||||| |||||| |
|
|
| T |
10901630 |
atagttttggaatgttg |
10901614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 220 - 479
Target Start/End: Complemental strand, 9320199 - 9319940
Alignment:
| Q |
220 |
tctcttggggtggctcgtggcattgagtacttgcataatggatgtgatatgaaaattctacactttgatataaagcctcataacatccttcttgatgaaa |
319 |
Q |
| |
|
|||||||| ||||||||||| || | || || ||| | |||||||| ||| ||||| | || |||||||| ||||| |||||||||||||||||||| | |
|
|
| T |
9320199 |
tctcttggagtggctcgtggtatggcttatttacatcaaggatgtgacatgcaaattttgcattttgatatcaagccccataacatccttcttgatgaga |
9320100 |
T |
|
| Q |
320 |
atttcaatccaaaagtttctgattttggacttgctagactctgtcctacagataaaagcattgtgtcattaactgcagcaagagggaccattggatacat |
419 |
Q |
| |
|
| || | || |||||||| || ||||| ||||||| || | ||||| || | |||||||| | ||||||||||||||||| || |||||||| || |
|
|
| T |
9320099 |
actttatccccaaagtttcagactttggtcttgctaagctttatcctaatgagattagcattgtcactttaactgcagcaagaggaacaattggatatat |
9320000 |
T |
|
| Q |
420 |
ggctcctgaactattctacagaaatgttggcacaatatcttacaaagctgatgtatatag |
479 |
Q |
| |
|
|||||||||| | ||||||| |||| |||| | |||| ||||| |||||||||||||| |
|
|
| T |
9319999 |
ggctcctgaattgttctacaaaaatattggaggagtatcctacaaggctgatgtatatag |
9319940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 262 - 485
Target Start/End: Original strand, 9453679 - 9453902
Alignment:
| Q |
262 |
tgtgatatgaaaattctacactttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggacttgctagactct |
361 |
Q |
| |
|
||||||||| ||||| | || |||||||| |||||||| |||||||||||||| |||||||||| || |||||||| |||||||| ||||| | || | |
|
|
| T |
9453679 |
tgtgatatgcaaattttgcattttgatattaagcctcacaacatccttcttgacgaaaatttcatccctaaagtttcagattttggtcttgcaaagcttt |
9453778 |
T |
|
| Q |
362 |
gtcctacagataaaagcattgtgtcattaactgcagcaagagggaccattggatacatggctcctgaactattctacagaaatgttggcacaatatctta |
461 |
Q |
| |
|
||||| || || |||||||| | || || ||||||||||| || ||||| ||||||||||||||| | |||||| |||| |||| | |||||| | |
|
|
| T |
9453779 |
atcctattgacaatagcattgtcgctttgacagcagcaagaggaacaattggttacatggctcctgaattgttctaccaaaatattgggagaatatcaca |
9453878 |
T |
|
| Q |
462 |
caaagctgatgtatatagttttgg |
485 |
Q |
| |
|
||| || ||||| ||||||||||| |
|
|
| T |
9453879 |
caaggccgatgtgtatagttttgg |
9453902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 220 - 485
Target Start/End: Original strand, 9318103 - 9318368
Alignment:
| Q |
220 |
tctcttggggtggctcgtggcattgagtacttgcataatggatgtgatatgaaaattctacactttgatataaagcctcataacatccttcttgatgaaa |
319 |
Q |
| |
|
|||||||| ||||||||||| |||| || |||||| | |||||||| ||| |||| | || |||||||| ||||| |||||||||||||||||||| | |
|
|
| T |
9318103 |
tctcttggagtggctcgtggaattgcttatttgcatgaaggatgtgacatgcaaatcttgcattttgatatcaagccccataacatccttcttgatgaga |
9318202 |
T |
|
| Q |
320 |
atttcaatccaaaagtttctgattttggacttgctagactctgtcctacagataaaagcattgtgtcattaactgcagcaagagggaccattggatacat |
419 |
Q |
| |
|
| || | ||| |||||||| || ||||| || || | || | ||| | || | |||||||| | ||||||||||| ||||| || ||||||||||| |
|
|
| T |
9318203 |
actttattcccaaagtttcagactttggtctggcaaagctttatccaaatgacattagcattgtcactttaactgcagctagaggaacaattggatacat |
9318302 |
T |
|
| Q |
420 |
ggctcctgaactattctacagaaatgttggcacaatatcttacaaagctgatgtatatagttttgg |
485 |
Q |
| |
|
|||||||||| | ||||||| |||| |||| | |||| ||||| || ||||||||||| ||||| |
|
|
| T |
9318303 |
ggctcctgaattgttctacaaaaatattggaggagtatcctacaaggccgatgtatatagctttgg |
9318368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #15
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 259 - 479
Target Start/End: Complemental strand, 9350477 - 9350257
Alignment:
| Q |
259 |
ggatgtgatatgaaaattctacactttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggacttgctagac |
358 |
Q |
| |
|
|||||||| ||| ||||| | || |||||||| ||||| |||||||||||||||||||| || || | || |||||||| || ||||| ||||||| | |
|
|
| T |
9350477 |
ggatgtgacatgcaaattttgcattttgatatcaagccccataacatccttcttgatgagaactttatccccaaagtttcagactttggtcttgctaagc |
9350378 |
T |
|
| Q |
359 |
tctgtcctacagataaaagcattgtgtcattaactgcagcaagagggaccattggatacatggctcctgaactattctacagaaatgttggcacaatatc |
458 |
Q |
| |
|
| | ||||| || | |||||||| | ||||||||||||||||| || |||||||| ||||||||||| | ||||||| |||| |||| | |||| |
|
|
| T |
9350377 |
tttatcctaatgagattagcattgtcactttaactgcagcaagaggaacaattggatatatggctcctgagttgttctacaaaaatattggaggagtatc |
9350278 |
T |
|
| Q |
459 |
ttacaaagctgatgtatatag |
479 |
Q |
| |
|
||||| |||||||||||||| |
|
|
| T |
9350277 |
ctacaaggctgatgtatatag |
9350257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #16
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 262 - 485
Target Start/End: Original strand, 9432692 - 9432915
Alignment:
| Q |
262 |
tgtgatatgaaaattctacactttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggacttgctagactct |
361 |
Q |
| |
|
||||||||| ||||| | || |||||||| |||||||| ||||||||||| || |||||||||| || |||||||| || ||||| ||||| | || | |
|
|
| T |
9432692 |
tgtgatatgcaaattttgcattttgatattaagcctcacaacatccttctggacgaaaatttcatccctaaagtttcggactttggtcttgcaaagcttt |
9432791 |
T |
|
| Q |
362 |
gtcctacagataaaagcattgtgtcattaactgcagcaagagggaccattggatacatggctcctgaactattctacagaaatgttggcacaatatctta |
461 |
Q |
| |
|
||||| || |||||||||| | || || ||||||||||| || ||||| ||||||||||||||| | |||||| |||| |||| | |||||| | |
|
|
| T |
9432792 |
atcctattgacaaaagcattgccactttgacggcagcaagaggaacaattggttacatggctcctgaattgttctaccaaaatattgggagaatatcaca |
9432891 |
T |
|
| Q |
462 |
caaagctgatgtatatagttttgg |
485 |
Q |
| |
|
||| || ||||| ||||||||||| |
|
|
| T |
9432892 |
caaggccgatgtgtatagttttgg |
9432915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #17
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 262 - 485
Target Start/End: Complemental strand, 9399887 - 9399664
Alignment:
| Q |
262 |
tgtgatatgaaaattctacactttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggacttgctagactct |
361 |
Q |
| |
|
||||||||| ||||| | || |||||||| |||||||| |||||||||||||| |||||||||| || |||||||| || ||||| ||||| | || | |
|
|
| T |
9399887 |
tgtgatatgcaaattttgcattttgatattaagcctcacaacatccttcttgacgaaaatttcatccctaaagtttcggactttggtcttgcaaagcttt |
9399788 |
T |
|
| Q |
362 |
gtcctacagataaaagcattgtgtcattaactgcagcaagagggaccattggatacatggctcctgaactattctacagaaatgttggcacaatatctta |
461 |
Q |
| |
|
||||| || |||||||||| | || | ||||||||||| || ||||| ||||||||||||||||| |||| | |||| |||| |||||| || |
|
|
| T |
9399787 |
atcctattgacaaaagcattgccactttgatggcagcaagaggaacaattggttacatggctcctgaactgttcttccaaaatattgggggaatatcata |
9399688 |
T |
|
| Q |
462 |
caaagctgatgtatatagttttgg |
485 |
Q |
| |
|
|| |||||||| ||||| ||||| |
|
|
| T |
9399687 |
taaggctgatgtgtatagctttgg |
9399664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #18
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 259 - 485
Target Start/End: Complemental strand, 9384483 - 9384257
Alignment:
| Q |
259 |
ggatgtgatatgaaaattctacactttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggacttgctagac |
358 |
Q |
| |
|
|||||||||||| |||||||||| |||||||| ||||||||||| || ||||| || ||| | || |||||| ||||| |||||||||||||| | | |
|
|
| T |
9384483 |
ggatgtgatatgcaaattctacattttgatatcaagcctcataatattcttctagacgaagagtttgttccaaaggtttcggattttggacttgcaaagc |
9384384 |
T |
|
| Q |
359 |
tctgtcctacagataaaagcattgtgtcattaactgcagcaagagggaccattggatacatggctcctgaactattctacagaaatgttggcacaatatc |
458 |
Q |
| |
|
| | |||| | | |||||||| | |||||||| |||||||| || | || ||||||||||||||||| ||||||| |||| |||| | | || |
|
|
| T |
9384383 |
tatatcctgtgaacgatagcattgttaccttaactgcggcaagaggaactttgggttacatggctcctgaactgttctacaaaaatattggtggagtgtc |
9384284 |
T |
|
| Q |
459 |
ttacaaagctgatgtatatagttttgg |
485 |
Q |
| |
|
|||||| |||||||||||||| ||||| |
|
|
| T |
9384283 |
ttacaaggctgatgtatatagctttgg |
9384257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #19
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 232 - 485
Target Start/End: Original strand, 9233884 - 9234137
Alignment:
| Q |
232 |
gctcgtggcattgagtacttgcataatggatgtgatatgaaaattctacactttgatataaagcctcataacatccttcttgatgaaaatttcaatccaa |
331 |
Q |
| |
|
|||||||| || ||||| ||||| | || ||||||||| |||||||||| |||||||| ||||||||||| || ||||| || ||| ||||| ||||| |
|
|
| T |
9233884 |
gctcgtgggatagagtatctgcatcaaggttgtgatatgcaaattctacattttgatatcaagcctcataatattcttctagacgaagatttcgttccaa |
9233983 |
T |
|
| Q |
332 |
aagtttctgattttggacttgctagactctgtcctacagataaaagcattgtgtcattaactgcagcaagagggaccattggatacatggctcctgaact |
431 |
Q |
| |
|
| ||||| |||||||||||||| | || | ||| | | |||||||| | |||||||| |||||||| || | || ||||||||||||||| | |
|
|
| T |
9233984 |
aggtttcggattttggacttgcaaagctttaccctgtgaacgatagcattgttccgttaactgcggcaagaggaactttgggttacatggctcctgaatt |
9234083 |
T |
|
| Q |
432 |
attctacagaaatgttggcacaatatcttacaaagctgatgtatatagttttgg |
485 |
Q |
| |
|
||||||| |||| |||| | | || ||||||||||||||||| |||||||| |
|
|
| T |
9234084 |
gttctacaaaaatattggtggagtgtcgtacaaagctgatgtatacagttttgg |
9234137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #20
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 257 - 425
Target Start/End: Complemental strand, 8964772 - 8964604
Alignment:
| Q |
257 |
atggatgtgatatgaaaattctacactttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggacttgctag |
356 |
Q |
| |
|
||||||| || ||||| ||| | || |||||||| |||||||| ||||||||||||||||| ||||||| |||||||| ||||| |||||| | |||| |
|
|
| T |
8964772 |
atggatgcgaaatgaagattttgcattttgatattaagcctcacaacatccttcttgatgagaatttcaccccaaaagtctctgactttggattggctaa |
8964673 |
T |
|
| Q |
357 |
actctgtcctacagataaaagcattgtgtcattaactgcagcaagagggaccattggatacatggctcc |
425 |
Q |
| |
|
|| | |||| ||| || |||||||| || | || || |||||||| ||||||||||| |||||||| |
|
|
| T |
8964672 |
gctatatcctgtagagaatagcattgtcacaatgacagcggcaagaggtaccattggatatatggctcc |
8964604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #21
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 257 - 489
Target Start/End: Complemental strand, 8999923 - 8999691
Alignment:
| Q |
257 |
atggatgtgatatgaaaattctacactttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggacttgctag |
356 |
Q |
| |
|
||||||| || ||||| ||| |||| |||||||| |||||||| |||||||||||||||||||| |||| |||||||| ||||| || ||| | |||| |
|
|
| T |
8999923 |
atggatgcgaaatgaagattttacattttgatatcaagcctcacaacatccttcttgatgaaaacttcacaccaaaagtctctgacttcggattggctaa |
8999824 |
T |
|
| Q |
357 |
actctgtcctacagataaaagcattgtgtcattaactgcagcaagagggaccattggatacatggctcctgaactattctacagaaatgttggcacaata |
456 |
Q |
| |
|
|| | ||| || || |||||||| || | ||||| |||||||| ||||||||||| |||||||| ||| | ||||| | |||| |||| | | |
|
|
| T |
8999823 |
gctatatcccgtggagaatagcattgtcacaatgactgcggcaagaggtaccattggatatatggctccagaattgttctataaaaatattgggggagtg |
8999724 |
T |
|
| Q |
457 |
tcttacaaagctgatgtatatagttttgggatg |
489 |
Q |
| |
|
||||| || |||||||| ||||| ||||||||| |
|
|
| T |
8999723 |
tcttataaggctgatgtttatagctttgggatg |
8999691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #22
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 257 - 425
Target Start/End: Original strand, 8873918 - 8874086
Alignment:
| Q |
257 |
atggatgtgatatgaaaattctacactttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggacttgctag |
356 |
Q |
| |
|
|||||||||| ||||| ||| | || |||||||| |||||||| ||||||||||||||||| || || | ||| ||||| ||||| |||||| | |||| |
|
|
| T |
8873918 |
atggatgtgaaatgaagattttgcattttgatattaagcctcacaacatccttcttgatgagaactttactccgaaagtctctgactttggattggctaa |
8874017 |
T |
|
| Q |
357 |
actctgtcctacagataaaagcattgtgtcattaactgcagcaagagggaccattggatacatggctcc |
425 |
Q |
| |
|
|| | |||| || || |||||||| || | ||||| |||||||| ||||||||||| |||||||| |
|
|
| T |
8874018 |
gctatatcctgtggagaatagcattgtcacaatgactgcggcaagaggtaccattggatatatggctcc |
8874086 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 31 - 98
Target Start/End: Complemental strand, 9464601 - 9464534
Alignment:
| Q |
31 |
ttcatcaatgaagttgtcaccattggtaggattcaccatgttaatgtggtacaccttattggtttttg |
98 |
Q |
| |
|
|||||||||||||||| |||||||| | ||||||||||||||||||||| ||||| ||||| ||||| |
|
|
| T |
9464601 |
ttcatcaatgaagttgctaccattggaacgattcaccatgttaatgtggttcacctaattggcttttg |
9464534 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 391 - 489
Target Start/End: Original strand, 9082523 - 9082621
Alignment:
| Q |
391 |
actgcagcaagagggaccattggatacatggctcctgaactattctacagaaatgttggcacaatatcttacaaagctgatgtatatagttttgggatg |
489 |
Q |
| |
|
|||||||||||||| || |||||||| ||||||||||| ||||||||| |||| | || | | || ||||| |||||||| ||||||||||||||| |
|
|
| T |
9082523 |
actgcagcaagaggtacaattggatatatggctcctgagttattctacaaaaatatagggggagtgtcgtacaaggctgatgtttatagttttgggatg |
9082621 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 388 - 485
Target Start/End: Original strand, 9255009 - 9255106
Alignment:
| Q |
388 |
ttaactgcagcaagagggaccattggatacatggctcctgaactattctacagaaatgttggcacaatatcttacaaagctgatgtatatagttttgg |
485 |
Q |
| |
|
||||| |||||||| ||||| ||||||||||||||||||||| | |||||| |||| |||| | |||| ||||| || ||||||||||| ||||| |
|
|
| T |
9255009 |
ttaaccgcagcaagggggacaattggatacatggctcctgaattgttctaccaaaatattggaggagtatcgtacaaggccgatgtatatagctttgg |
9255106 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 283 - 350
Target Start/End: Complemental strand, 9464352 - 9464285
Alignment:
| Q |
283 |
tttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggact |
350 |
Q |
| |
|
||||| ||||||||||||||||| |||||||| | ||| |||| |||||| ||||| |||||| |||| |
|
|
| T |
9464352 |
tttgacataaagcctcataacattcttcttgacgtaaacttcactccaaaggtttcggatttttgact |
9464285 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 283 - 350
Target Start/End: Complemental strand, 9488784 - 9488717
Alignment:
| Q |
283 |
tttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggact |
350 |
Q |
| |
|
||||| ||||||||||||||||| |||||||| | ||| |||| |||||| ||||| |||||| |||| |
|
|
| T |
9488784 |
tttgacataaagcctcataacattcttcttgacgtaaacttcactccaaaggtttcagattttagact |
9488717 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 31 - 98
Target Start/End: Complemental strand, 9489033 - 9488966
Alignment:
| Q |
31 |
ttcatcaatgaagttgtcaccattggtaggattcaccatgttaatgtggtacaccttattggtttttg |
98 |
Q |
| |
|
|||||||||||||||| || ||||| | ||||||||||||||| ||||| ||||| ||||| ||||| |
|
|
| T |
9489033 |
ttcatcaatgaagttgctacgattggaacgattcaccatgttaacgtggttcacctaattggcttttg |
9488966 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 220 - 314
Target Start/End: Complemental strand, 8956320 - 8956226
Alignment:
| Q |
220 |
tctcttggggtggctcgtggcattgagtacttgcataatggatgtgatatgaaaattctacactttgatataaagcctcataacatccttcttga |
314 |
Q |
| |
|
|||||||| || || ||||| |||| || |||||| | || ||||| ||| ||||| |||| |||||||| |||||||||||||| |||||||| |
|
|
| T |
8956320 |
tctcttggagttgcacgtggaattgcttatttgcatcaaggttgtgacatgcaaattttacattttgatatcaagcctcataacattcttcttga |
8956226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 232 - 350
Target Start/End: Complemental strand, 9056846 - 9056728
Alignment:
| Q |
232 |
gctcgtggcattgagtacttgcataatggatgtgatatgaaaattctacactttgatataaagcctcataacatccttcttgatgaaaatttcaatccaa |
331 |
Q |
| |
|
|||||||| ||||| || | |||||||||||||| ||||||||| | || |||||||| ||||| || || ||||| ||||| || ||||| | ||||| |
|
|
| T |
9056846 |
gctcgtgggattgattatctccataatggatgtgaaatgaaaattttgcattttgatatcaagccacacaatatcctacttgacgagaattttattccaa |
9056747 |
T |
|
| Q |
332 |
aagtttctgattttggact |
350 |
Q |
| |
|
| | ||||| |||||||| |
|
|
| T |
9056746 |
agatatctgactttggact |
9056728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 262 - 314
Target Start/End: Complemental strand, 8942272 - 8942220
Alignment:
| Q |
262 |
tgtgatatgaaaattctacactttgatataaagcctcataacatccttcttga |
314 |
Q |
| |
|
||||| ||| ||||| |||| |||||||| |||||||||||||| |||||||| |
|
|
| T |
8942272 |
tgtgacatgcaaattttacattttgatatcaagcctcataacatacttcttga |
8942220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 220 - 449
Target Start/End: Original strand, 15927009 - 15927238
Alignment:
| Q |
220 |
tctcttggggtggctcgtggcattgagtacttgcataatggatgtgatatgaaaattctacactttgatataaagcctcataacatccttcttgatgaaa |
319 |
Q |
| |
|
|||||||| || |||||||| || | ||||| ||| | |||||| | ||| ||||| | || ||||| || ||||| |||||||||||||||||||| | |
|
|
| T |
15927009 |
tctcttggagttgctcgtggtatggcttacttacatcaaggatgtaacatgcaaattttgcattttgacatcaagccccataacatccttcttgatgaga |
15927108 |
T |
|
| Q |
320 |
atttcaatccaaaagtttctgattttggacttgctagactctgtcctacagataaaagcattgtgtcattaactgcagcaagagggaccattggatacat |
419 |
Q |
| |
|
| || | || |||||||| || ||||| ||||| | || | ||||| || | || ||||| | ||||||||||||||||| || ||||||||||| |
|
|
| T |
15927109 |
actttatccccaaagtttccgactttggtcttgcaaagctttatcctaatgagattagtattgtcactttaactgcagcaagaggaacgattggatacat |
15927208 |
T |
|
| Q |
420 |
ggctcctgaactattctacagaaatgttgg |
449 |
Q |
| |
|
|||||||||| ||||||||| |||| |||| |
|
|
| T |
15927209 |
ggctcctgaattattctacaaaaatattgg |
15927238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 224 - 485
Target Start/End: Complemental strand, 9159885 - 9159624
Alignment:
| Q |
224 |
ttggggtggctcgtggcattgagtacttgcataatggatgtgatatgaaaattctacactttgatataaagcctcataacatccttcttgatgaaaattt |
323 |
Q |
| |
|
|||| ||||||||||| |||| || |||||| | |||||||| ||| |||| | || |||||||| ||||| |||||||| |||||||| || || || |
|
|
| T |
9159885 |
ttggagtggctcgtggaattgcttatttgcatcaaggatgtgacatgcaaatcttgcattttgatatcaagccccataacatacttcttgacgagaactt |
9159786 |
T |
|
| Q |
324 |
caatccaaaagtttctgattttggacttgctagactctgtcctacagataaaagcattgtgtcattaactgcagcaagagggaccattggatacatggct |
423 |
Q |
| |
|
| || || |||||||| ||||| ||||| | || | ||||| || || || ||||| ||||||||||||||||| || ||||| || |||||| |
|
|
| T |
9159785 |
tatccccaaggtttctgactttggtcttgcaaagctttatcctaatgacaatagtattgtaaatttaactgcagcaagaggaacaattggttatatggct |
9159686 |
T |
|
| Q |
424 |
cctgaactattctacagaaatgttggcacaatatcttacaaagctgatgtatatagttttgg |
485 |
Q |
| |
|
|| || | ||||||| |||| |||| | |||| ||||| |||||||| ||||||||||| |
|
|
| T |
9159685 |
cccgagttgttctacaaaaatattggtggagtatcatacaaggctgatgtttatagttttgg |
9159624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 313 - 353
Target Start/End: Complemental strand, 40225285 - 40225245
Alignment:
| Q |
313 |
gatgaaaatttcaatccaaaagtttctgattttggacttgc |
353 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
40225285 |
gatgaaaatttcaatccaaaactctctgattttggacttgc |
40225245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 323
Target Start/End: Complemental strand, 27692659 - 27692614
Alignment:
| Q |
278 |
tacactttgatataaagcctcataacatccttcttgatgaaaattt |
323 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||||| || ||||| |
|
|
| T |
27692659 |
tacactttgatataaaacctcataacattcttcttgacgagaattt |
27692614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 313 - 353
Target Start/End: Original strand, 7945893 - 7945933
Alignment:
| Q |
313 |
gatgaaaatttcaatccaaaagtttctgattttggacttgc |
353 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| ||||| |
|
|
| T |
7945893 |
gatgaaaatttcaatccaaagctttctgattttggtcttgc |
7945933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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