View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14373_low_2 (Length: 326)
Name: NF14373_low_2
Description: NF14373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14373_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 5 - 309
Target Start/End: Complemental strand, 37428857 - 37428553
Alignment:
| Q |
5 |
ggaccatgcagcttgtataagggcctaattctctgcgagcttgagcttgattctgccctcagcatggggctcatatggaagttgtacattcaggttaaaa |
104 |
Q |
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| T |
37428857 |
ggaccatgcagcttgtacaagggcataattctttgcgagattgagcttgattatgccctcagcaaggggctcatacggaagttgaacattcaggtaaaaa |
37428758 |
T |
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| Q |
105 |
tttaaagtggcaagcaacaccctctctccaagtaaaattaattctttctgctgctcatacacttcctgcatcatttacaaatcacagaaataaatataat |
204 |
Q |
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| T |
37428757 |
tctaaagtggcaagtaacaccctctctccaagtaaaattaattctttctgctgctcatacacttcctgcatcatttacaaatcacagaaataaatataat |
37428658 |
T |
|
| Q |
205 |
aagggttatggaaagagagtgcaacggttggacaggggcggacccaaccatacttgagggtaggaacttacacccctcaaaaagcaaattattaattccc |
304 |
Q |
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| T |
37428657 |
aagggttatggaaagagagtgcaacggttggacaggggcggacccaaccatacttgagggtaggaacttacacccctcaaaaagcaaattattaattccc |
37428558 |
T |
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| Q |
305 |
taaag |
309 |
Q |
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||||| |
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| T |
37428557 |
taaag |
37428553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 107 - 185
Target Start/End: Original strand, 37436400 - 37436478
Alignment:
| Q |
107 |
taaagtggcaagcaacaccctctctccaagtaaaattaattctttctgctgctcatacacttcctgcatcatttacaaa |
185 |
Q |
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| T |
37436400 |
taaagtggcaagtacaaccctttctccaagtaaaattaattctttctgctgctcatacacttcctgcatcatttacaaa |
37436478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 70 - 182
Target Start/End: Complemental strand, 32505356 - 32505244
Alignment:
| Q |
70 |
ggggctcatatggaagttgtacattcaggttaaaatttaaagtggcaagcaacaccctctctccaagtaaaattaattctttctgctgctcatacacttc |
169 |
Q |
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|||||| ||||||| |||| ||||||| || |||| ||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
32505356 |
ggggcttatatggatgttggacattcaagtcaaaagccaaagtggcaagtacaaccctctctccaagtaaaattaactctttctgctgctcatacacttc |
32505257 |
T |
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| Q |
170 |
ctgcatcatttac |
182 |
Q |
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| T |
32505256 |
ctacatcatttac |
32505244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 123 - 172
Target Start/End: Complemental strand, 28518056 - 28518007
Alignment:
| Q |
123 |
accctctctccaagtaaaattaattctttctgctgctcatacacttcctg |
172 |
Q |
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| T |
28518056 |
accctctctgcaagtagaattaattccttctgctgctcatacacttcctg |
28518007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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