View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14374_high_10 (Length: 371)
Name: NF14374_high_10
Description: NF14374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14374_high_10 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 24 - 366
Target Start/End: Original strand, 40764219 - 40764561
Alignment:
| Q |
24 |
tgctcttagtagtgtgtatacatttggcccaacatttcgtgcagagaattctcacacttccaggcatttggctgaattttggatggtagaacctgaaatt |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40764219 |
tgctcttagtagtgtgtatacatttggcccaacatttcgtgcagagaattctcacacttccaggcatttggctgaattttggatggtagaacctgaaatt |
40764318 |
T |
|
| Q |
124 |
gcgtttgcagacttggaggtatataaaaaggaacacactatctggttatgattattctcatctatagctgtttgaagttttttgaaatacaatgttttct |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40764319 |
gcgtttgcagacttggaggtatataaaaaggaacacactatctggttatgattattctcatcgatagctgtttgaagttttttgaaatacaatgttttct |
40764418 |
T |
|
| Q |
224 |
cacacctttctccctatcaaattagtcactattaaccacattatcagctgaatgccaattcaaatactttgttttttatggtaataaacttatttttcta |
323 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |
|
|
| T |
40764419 |
cacacctttctccctatcaaattagtcactattaaccccattatcagctgaatgccaattcaaatactttgttttttagggtaataaacttattttttta |
40764518 |
T |
|
| Q |
324 |
gtgcgtgcaatcttgaactgccaacttcactcctacgcctatg |
366 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
40764519 |
gtgcgtgcaatcttgaactgccaacttcactcctactcctatg |
40764561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 125; Significance: 3e-64; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 18 - 183
Target Start/End: Original strand, 42911860 - 42912029
Alignment:
| Q |
18 |
tgcttctgctcttagtagtgtgtatacatttggcccaacatttcgtgcagagaattctcacacttccaggcatttggctgaattttggatggtagaacct |
117 |
Q |
| |
|
||||| |||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42911860 |
tgcttgtgctcttagtcgcgtgtatacatttggcccgacatttcgtgcagagaattctcacacttccaggcatttggctgaattttggatggtagaacct |
42911959 |
T |
|
| Q |
118 |
gaaattgcgtttgcagacttggaggtatataaaaaggaacacact----atctggttatgattattctca |
183 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||| |
|
|
| T |
42911960 |
gaaattgcgtttgcagacttggaggtatataaaaatgaacacacactcaatcttgttatgattattctca |
42912029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 216 - 366
Target Start/End: Original strand, 42912038 - 42912182
Alignment:
| Q |
216 |
tgttttctcacacctttctccctatcaaattagtcactattaaccacattatcagctgaatgccaattcaaatactttgttttttatggtaataaactta |
315 |
Q |
| |
|
|||||||||||| |||| | ||||||||||| | |||||||||||||||| ||||| || |||||||||||| ||||||||| ||||||||||||| |
|
|
| T |
42912038 |
tgttttctcacatctttaacgctatcaaattatttgttattaaccacattatcggctgagtgtcaattcaaatac--tgttttttagggtaataaactta |
42912135 |
T |
|
| Q |
316 |
tttttctagtgcgtgcaatcttgaactgccaacttcactcctacgcctatg |
366 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
42912136 |
tttttcta----gtgcaatcttgaactgccaacttcacccctactcctatg |
42912182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 37 - 105
Target Start/End: Complemental strand, 41661999 - 41661931
Alignment:
| Q |
37 |
gtgtatacatttggcccaacatttcgtgcagagaattctcacacttccaggcatttggctgaattttgg |
105 |
Q |
| |
|
|||||||||||||| || |||||||| |||||||||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
41661999 |
gtgtatacatttggtcccacatttcgagcagagaattctaacacttccaggcacttggctgaattttgg |
41661931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University