View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14374_high_12 (Length: 319)
Name: NF14374_high_12
Description: NF14374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14374_high_12 |
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Alignment Details
Target: chr8 (Bit Score: 280; Significance: 1e-157; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 18 - 309
Target Start/End: Original strand, 40113500 - 40113791
Alignment:
| Q |
18 |
gaaagatagtatcaaattaggtagttcagcacacattacatcggtacaagcatttgatttgaaacataattatctttctatatatatgcactatcgagct |
117 |
Q |
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| T |
40113500 |
gaaagatagtatcaaattaggtagttcagcacacattacatcggtacaagcatttgatttgaaacataattatctttctatatatatgtactatcgagct |
40113599 |
T |
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| Q |
118 |
ggaatacatacatagtagtactagaaaagaagcttcactttgatcaagaggacaaaggcgaagaaaagggtcaactgaaaatggaagcagtgaagggttg |
217 |
Q |
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| T |
40113600 |
ggaatacatacatagcagtactagaaaagaagcttcactttgatcaagaggacaaagacgaagaaaagggtcaactgaaaatggaagcagtgaagggttg |
40113699 |
T |
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| Q |
218 |
tcataaggaattagaagcaaaagcacaagtagttgcaaatgatgttgtcacagaaactgaactaaccaaaatccgtcttgtgagagcctttg |
309 |
Q |
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| T |
40113700 |
tcataaggaattagaagcaaaagcacaagtagttgcaaatgatgttgtcacagaaactgaactaaccaaaatccgtcttgtgagagcctttg |
40113791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 251 - 309
Target Start/End: Original strand, 40120994 - 40121052
Alignment:
| Q |
251 |
tgcaaatgatgttgtcacagaaactgaactaaccaaaatccgtcttgtgagagcctttg |
309 |
Q |
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||||||||||| ||| ||||||||||||||||||||||||||||||||| || |||||| |
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| T |
40120994 |
tgcaaatgatgctgttacagaaactgaactaaccaaaatccgtcttgtgcgaccctttg |
40121052 |
T |
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