View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14374_high_16 (Length: 259)
Name: NF14374_high_16
Description: NF14374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14374_high_16 |
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| [»] scaffold1113 (1 HSPs) |
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| [»] scaffold0961 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 229; Significance: 1e-126; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 16 - 256
Target Start/End: Complemental strand, 32683717 - 32683477
Alignment:
| Q |
16 |
attctggagaatgagtcaaaaccataatattaccgacacattgcgatagttatataggaatcagtacataataaccagacacgcatagacaagatttgcg |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32683717 |
attctggagaatgagtcaaaaccataatattaccgacacattacgatagttatataggaatcagtacataataaccagacacgcatagacaagatttgcg |
32683618 |
T |
|
| Q |
116 |
agcttggcacttcccaagtgtctaacactcacaacttaaggataaaacaaaacatagttcagttttcctttcttactctacacaactgcctaattttatt |
215 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32683617 |
agcttggcacttcccaagtgtctaaaactcacaacttaaggataaaacagaacatagttcagttttcctttcttactctacacaactgcctaattttatt |
32683518 |
T |
|
| Q |
216 |
tacagccttcaacatcctttatttgaacttcggcttttgga |
256 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
32683517 |
tacagccttcaacatcctttatttgaacttcggcttttgga |
32683477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 61 - 256
Target Start/End: Complemental strand, 32685382 - 32685187
Alignment:
| Q |
61 |
atagttatataggaatcagtacataataaccagacacgcatagacaagatttgcgagcttggcacttcccaagtgtctaacactcacaacttaaggataa |
160 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
32685382 |
atagttatataggaatcagtacataataaccagacacgcatagacaagatttgcgagcttggcacttcccaagtgtctaaaactcacaacttaaggataa |
32685283 |
T |
|
| Q |
161 |
aacaaaacatagttcagttttcctttcttactctacacaactgcctaattttatttacagccttcaacatcctttatttgaacttcggcttttgga |
256 |
Q |
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|||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32685282 |
aacagaacatagttcagttttcctttcttactatacacaactgcctaattttatttacagccttcaacatcctttatttgaacttcggcttttgga |
32685187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 78 - 243
Target Start/End: Original strand, 33010662 - 33010825
Alignment:
| Q |
78 |
agtacataataaccagacacgcatagac-aagatttgcgagcttggcacttcccaagtgtctaacactcacaacttaaggataaaacaaaacatagttca |
176 |
Q |
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||||||||||||||| |||||||||||| ||||||||| |||||||| |||||||||| |||| | ||||||||| |||||||||| ||||||||||| |
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| T |
33010662 |
agtacataataaccaaacacgcatagaccaagatttgcaagcttggctcttcccaagtatctatc--tcacaacttgaggataaaacggaacatagttca |
33010759 |
T |
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| Q |
177 |
gttttcctttcttactctacacaactgcctaattttatttacagccttcaacatcctttatttgaac |
243 |
Q |
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||| | |||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||| |
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| T |
33010760 |
atttccttttcttactccacacaactgcttaattttatttaca-ccttcaacatcctttatttgaac |
33010825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 63 - 174
Target Start/End: Original strand, 34925139 - 34925256
Alignment:
| Q |
63 |
agttatataggaatcagtacataataaccagacacgcatagac-aagatttgcgagcttgg----cact-tcccaagtgtctaacactcacaacttaagg |
156 |
Q |
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||||||||||||| |||||| |||||| |||||| ||||||| |||||||| |||||||| ||| |||||||||||||||||||||||||| | | |
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| T |
34925139 |
agttatataggaaatagtacagaataacaagacacacatagaccaagatttgagagcttggttatcaccctcccaagtgtctaacactcacaacttcatg |
34925238 |
T |
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| Q |
157 |
ataaaacaaaacatagtt |
174 |
Q |
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||||||| |||||||||| |
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| T |
34925239 |
ataaaactaaacatagtt |
34925256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 32685464 - 32685388
Alignment:
| Q |
16 |
attctggagaatgagtcaaaaccataatattaccgacacattgcg---atagttatataggaatcagtacataataa |
89 |
Q |
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|||||||||||||| ||||| ||| |||||||| ||||||| || |||||||||||||||| |||||| ||||| |
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| T |
32685464 |
attctggagaatgattcaaagccagaatattacagacacatcacgataatagttatataggaattagtacagaataa |
32685388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1113 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1113
Description:
Target: scaffold1113; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 213
Target Start/End: Original strand, 1336 - 1403
Alignment:
| Q |
148 |
aacttaaggataaaacaaaacatagttcagttttcctttcttactct--acacaactgcctaatttta |
213 |
Q |
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||||| ||||||||||| |||||| |||| ||| ||||||||||| ||||||||||||||||||| |
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| T |
1336 |
aacttgaggataaaacataacataattcaatttcaatttcttactctacacacaactgcctaatttta |
1403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0961 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0961
Description:
Target: scaffold0961; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 213
Target Start/End: Complemental strand, 2281 - 2214
Alignment:
| Q |
148 |
aacttaaggataaaacaaaacatagttcagttttcctttcttactcta--cacaactgcctaatttta |
213 |
Q |
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||||| ||||||||||| |||||| |||| ||| |||||||||||| |||||||||||||||||| |
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| T |
2281 |
aacttgaggataaaacataacataattcaatttcaatttcttactctacacacaactgcctaatttta |
2214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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