View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14374_high_22 (Length: 227)
Name: NF14374_high_22
Description: NF14374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14374_high_22 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 123; Significance: 2e-63; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 101 - 227
Target Start/End: Original strand, 35044542 - 35044668
Alignment:
| Q |
101 |
tcttctcttaatatgtttgcaaaagaagataaatacatttgaatatctaaaaaataatagacgccctatttctacgctatttatttgggttatattttta |
200 |
Q |
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| T |
35044542 |
tcttctcttaatatgtttgcaaaagaagataaatacatttgaatatctaaaaaataatcgacgccctatttctacgctatttatttgggttatattttta |
35044641 |
T |
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| Q |
201 |
taaaagaaataatatttgtacaaccat |
227 |
Q |
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| T |
35044642 |
taaaagaaataatatttgtacaaccat |
35044668 |
T |
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Target: chr1; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 35044489 - 35044549
Alignment:
| Q |
19 |
actacgaccttcccacctcctcctccatcggagagaaagagattatgactttctcttctct |
79 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35044489 |
actacgaccttcccacctcctcctccatcggagagaaagagattatgactttctcttctct |
35044549 |
T |
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