View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14374_high_3 (Length: 596)
Name: NF14374_high_3
Description: NF14374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14374_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 142; Significance: 3e-74; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 69 - 261
Target Start/End: Original strand, 5973735 - 5973924
Alignment:
| Q |
69 |
ggaagaacggaagaagaagaatcaatgaggaagaagggctgcaattaggggataagaagggatgaagaatcccattttttcttaatgcatccccttttat |
168 |
Q |
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| T |
5973735 |
ggaagaacggaagaagaagaatcaatgaggaagaagggctgcaattaggggataagaaaggatgaagaatcccattttttcttaatgcatcccctt---t |
5973831 |
T |
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| Q |
169 |
atgtaatcaagtgattttgcaaagtaacatcgccgcgtgtatagagttaaagtttattgnnnnnnngtaaacagaagggttctaaagagtaaa |
261 |
Q |
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| T |
5973832 |
atgtaatcaagtgattttgcaaagtaacatcgccgcgtgtataaagttaaagtttattgaaaaaaagtaatcataagggttctaaagagtaaa |
5973924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 460 - 586
Target Start/End: Original strand, 5974704 - 5974830
Alignment:
| Q |
460 |
tttgattatttttcctagaaagaaaactagtaatgattcatggtagcaaagaaaattgagaattgattagattaaatgatggtaagtagagaatgcttcc |
559 |
Q |
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| T |
5974704 |
tttgattatttttcctagaaagaaaactagtaatgattcatggtagcaaagaaaattgagaattgattagattaaatgatggtaagtagagaatgcttcc |
5974803 |
T |
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| Q |
560 |
agtctacaatgcctttagatgatgatg |
586 |
Q |
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| T |
5974804 |
agtctacaatgcctttagatgatgatg |
5974830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 259 - 350
Target Start/End: Original strand, 5973947 - 5974035
Alignment:
| Q |
259 |
aaaataaaacttttatgagttattagaccaaaataaataaataaagaaataagtt-aaggatggtgtgctcaattaagtctttaataaacatt |
350 |
Q |
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| T |
5973947 |
aaaataaaacttttatgatttattagaccaaaataaataaat----aaataagttaaaggatcgtgtgttcaattaagtctttaataaacatt |
5974035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 105; Significance: 4e-52; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 460 - 588
Target Start/End: Original strand, 26537999 - 26538127
Alignment:
| Q |
460 |
tttgattatttttcctagaaagaaaactagtaatgattcatggtagcaaagaaaattgagaattgattagattaaatgatggtaagtagagaatgcttcc |
559 |
Q |
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| T |
26537999 |
tttgattatttttcctagaaagaaaactagtaatgattcatgatagcaaagaaaatgaagaattgattagattaaatgatagtaagtagagaatgcttcc |
26538098 |
T |
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| Q |
560 |
agtctacaatgcctttagatgatgatgtc |
588 |
Q |
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| T |
26538099 |
ggtctacaatgcctttagatgatgttgtc |
26538127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 460 - 547
Target Start/End: Original strand, 2461143 - 2461230
Alignment:
| Q |
460 |
tttgattatttttcctagaaagaaaactagtaatgattcatggtagcaaagaaaattgagaattgattagattaaatgatggtaagta |
547 |
Q |
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| T |
2461143 |
tttgattagttttgctagaaagaaagctataattgatccatagtagcaattaaaatcaataattgattagattaaatgatagtaagta |
2461230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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