View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14374_high_6 (Length: 458)
Name: NF14374_high_6
Description: NF14374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14374_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 17 - 453
Target Start/End: Original strand, 3592910 - 3593345
Alignment:
| Q |
17 |
ttcctatgttaattgtaactttttctttataagtgttaggggctaatttgttatggctaaggagaaatgttagtagcaagttaacaatcatggacctctt |
116 |
Q |
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| T |
3592910 |
ttcctatgttaattgtaactttttctttataagtgttaggggctaatttgttatggctaaggagaaatgttagtagcaagttaacaatcatggacctctt |
3593009 |
T |
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| Q |
117 |
atacgtagaatctatgaaacactaatatagacataataacggagataatatgatattaatatgttgacgttttaacaatttgattgaacgtaattacata |
216 |
Q |
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| T |
3593010 |
ata--tagaatctatgaaacactaatatagacataataacggacacaatatgatattaatatgttgacattttaacaatttgattgaacgtaattacata |
3593107 |
T |
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| Q |
217 |
tgttgatatagtgtataatggtattatacattgacatatattagacacttgaacacacttaaataatgaaatattgatgctacaaagtatagaactattt |
316 |
Q |
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| T |
3593108 |
tgttgatatagtgtataatggtattatatattgacatgtattagacacttgaacgcacttacgatatgagatattgatgctacaaagtatagaactattt |
3593207 |
T |
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| Q |
317 |
taatgttatataaagttagggaattgttaaaatttgttcaagggagttagaagtttgtgatgatgaagatgaagtttatttagttatcttaggatcatat |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3593208 |
taatgttatataaagttagggaattgttaaaatttgttcaagggagttagaagtttgtgatgatgaagatgaagtttatttagttatcttaggatcatat |
3593307 |
T |
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| Q |
417 |
ataaaggtgtatccta-cttatttgtatcatattcttc |
453 |
Q |
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| T |
3593308 |
ataaaggtgtatcctaccttatttgtatcatattcttc |
3593345 |
T |
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