View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14374_low_1 (Length: 712)

Name: NF14374_low_1
Description: NF14374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14374_low_1
NF14374_low_1
[»] chr2 (3 HSPs)
chr2 (367-696)||(6732220-6732561)
chr2 (228-346)||(6722361-6722479)
chr2 (12-98)||(6852537-6852623)
[»] scaffold0425 (3 HSPs)
scaffold0425 (12-98)||(4400-4486)
scaffold0425 (138-197)||(4517-4576)
scaffold0425 (148-204)||(3826-3882)
[»] chr7 (4 HSPs)
chr7 (18-98)||(325520-325600)
chr7 (133-206)||(325626-325699)
chr7 (232-303)||(10544214-10544286)
chr7 (148-203)||(325329-325384)
[»] chr3 (2 HSPs)
chr3 (232-286)||(38920414-38920468)
chr3 (156-204)||(42423227-42423275)


Alignment Details
Target: chr2 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 367 - 696
Target Start/End: Original strand, 6732220 - 6732561
Alignment:
Q  367 attagcctctgatcatacttgcttcacaaatttatagcattccaacaatctttagagtgagcacatctgaaaaacatgtgcatcttttcctctactgcat 466  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  6732220 attagcctctgatcatacttgcttcacaaatttatagcattccaacaatctttagagtgagcacatctgaaaaacatgtgcatcttgtcctctactgcat 6732319  T
Q  467 catcatacatgtcatttggcaagggacttcactacggtgaaggttgaatctaatgaaaatacaaaaatcagagtaaa----------cctcaacaaaact 556  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||             ||||||||||    
T  6732320 catcatacatgtcatttggcaagggactccactacggtgaaggttgaatctaatgaaaatacaaaaatcagagtaaatgattatagtgaccaacaaaact 6732419  T
Q  557 att--tcattttcaggggtgattatagtgaccaagcctctctccaacttccatcaactctaggaaatgattgatgatctgtgagtgcaagacataatgtt 654  Q
    |||  |    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6732420 attgatagaattcaggggtgattatagtgaccaagcctctctccaacttccatcaactctaggaaatgattgatgatctgtgagtgcaagacataatgtt 6732519  T
Q  655 aaggcaccataatctttttggattgttatcttctctcatttt 696  Q
     |||||||||||||||||||||||||||||||||| ||||||    
T  6732520 gaggcaccataatctttttggattgttatcttctcccatttt 6732561  T

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Target: chr2; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 228 - 346
Target Start/End: Original strand, 6722361 - 6722479
Alignment:
Q  228 attgctgaattttaaatacgaatagaactatgtcattcatggtattttgaaataacttgaaagggactgtagcaatgagtcatcggtggacgatcttaga 327  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  6722361 attgctgaattttaaatacgaatagaactatctcattcatggtattttgaaataacttgaaagggattgtagcaatgagtcatcggtggacgatcttaga 6722460  T
Q  328 cattcattattttaatatt 346  Q
    |||||||||||||||||||    
T  6722461 cattcattattttaatatt 6722479  T

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Target: chr2; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 12 - 98
Target Start/End: Original strand, 6852537 - 6852623
Alignment:
Q  12 tgaatgatcaaaagagagaagaaggaaatgatattaatcaaaagaaatatattaagattattagatagtgcattctttttccttttg 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  6852537 tgaatgatcaaaagagagaagaaggaaatgatattaatcaaaagaaatatattaagattattagatattgcattcttttcccttttg 6852623  T

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Target: scaffold0425 (Bit Score: 87; Significance: 2e-41; HSPs: 3)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 12 - 98
Target Start/End: Original strand, 4400 - 4486
Alignment:
Q  12 tgaatgatcaaaagagagaagaaggaaatgatattaatcaaaagaaatatattaagattattagatagtgcattctttttccttttg 98  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4400 tgaatgatcaaaagagagaagaaggaaatgatattaatcaaaagaaatatattaagattattagatagtgcattctttttccttttg 4486  T

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Target: scaffold0425; HSP #2
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 138 - 197
Target Start/End: Original strand, 4517 - 4576
Alignment:
Q  138 aggtggcggtaaaaagtgactttcccatggtgggaagattatcaagtgtcctatgtgaaa 197  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  4517 aggtggcggtaaaaagtgactttctcatggtgggaagattatcaagtgtcctatgtgaaa 4576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 148 - 204
Target Start/End: Complemental strand, 3882 - 3826
Alignment:
Q  148 aaaaagtgactttcccatggtgggaagattatcaagtgtcctatgtgaaatgccacc 204  Q
    |||| ||||||||||||||||||||||||| |||||||||| |||||||||||||||    
T  3882 aaaatgtgactttcccatggtgggaagattttcaagtgtcccatgtgaaatgccacc 3826  T

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Target: chr7 (Bit Score: 73; Significance: 6e-33; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 325520 - 325600
Alignment:
Q  18 atcaaaagagagaagaaggaaatgatattaatcaaaagaaatatattaagattattagatagtgcattctttttccttttg 98  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||    
T  325520 atcaaaagagagaagaaggaaatgatattaatcaaaagaaatatattacgattattagatattgcattctttttccttttg 325600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 133 - 206
Target Start/End: Original strand, 325626 - 325699
Alignment:
Q  133 ctcacaggtggcggtaaaaagtgactttcccatggtgggaagattatcaagtgtcctatgtgaaatgccaccaa 206  Q
    |||||||||||||||||||||||| ||||||||||||||||| || |||| ||||| |||| ||||||||||||    
T  325626 ctcacaggtggcggtaaaaagtgattttcccatggtgggaaggttttcaaatgtcccatgttaaatgccaccaa 325699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 232 - 303
Target Start/End: Complemental strand, 10544286 - 10544214
Alignment:
Q  232 ctgaattttaaatacgaatagaactatgtcattcatggtattttgaaataactt-gaaagggactgtagcaat 303  Q
    ||||||||||||||||||||||||| || |||||||||||||| || | ||||| ||  ||||||||||||||    
T  10544286 ctgaattttaaatacgaatagaactgtgccattcatggtatttcgataaaacttggatggggactgtagcaat 10544214  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 203
Target Start/End: Complemental strand, 325384 - 325329
Alignment:
Q  148 aaaaagtgactttcccatggtgggaagattatcaagtgtcctatgtgaaatgccac 203  Q
    |||| |||||||| | |||||||||||||| |||||||||| |||| |||||||||    
T  325384 aaaatgtgacttttctatggtgggaagattttcaagtgtcccatgttaaatgccac 325329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 232 - 286
Target Start/End: Complemental strand, 38920468 - 38920414
Alignment:
Q  232 ctgaattttaaatacgaatagaactatgtcattcatggtattttgaaataacttg 286  Q
    ||||||||||||||| ||||||| | |||||||||||||||||||||| ||||||    
T  38920468 ctgaattttaaataccaatagaattgtgtcattcatggtattttgaaaaaacttg 38920414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 204
Target Start/End: Original strand, 42423227 - 42423275
Alignment:
Q  156 actttcccatggtgggaagattatcaagtgtcctatgtgaaatgccacc 204  Q
    |||||||||||||||||||||| |||||||||  |||||||||||||||    
T  42423227 actttcccatggtgggaagattttcaagtgtctcatgtgaaatgccacc 42423275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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