View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14374_low_12 (Length: 356)
Name: NF14374_low_12
Description: NF14374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14374_low_12 |
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| [»] chr7 (2 HSPs) |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 356
Target Start/End: Original strand, 40763887 - 40764242
Alignment:
| Q |
1 |
aagcttgttgttcaggagaagggggaggttgtttcacaattaaaaactgcagaagcagaaaggttggagaaggaacagatacagaatcctcctcctactg |
100 |
Q |
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| T |
40763887 |
aagcttgttgttcaggagaagggggaggttgtttcacaattaaaaactgcagaagcagaaaggttggagaaggaacagatacagaatcctcctcctactg |
40763986 |
T |
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| Q |
101 |
aatctaatgttgaagctgctaagcttgttgctcaggagaaggagaaggagattactgctgctgtggatgaacttaaaaaggctaaacggaatgtatccaa |
200 |
Q |
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| T |
40763987 |
aatctgatgttgaagctgctaagcttgttgctcaggagaaggagaaggagattactgctgctgtggatgaacttaaaaaagctaaacggaatgtatccaa |
40764086 |
T |
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| Q |
201 |
gctggaagaaagatctaaacttcagcccggtattcctcgaaaagatggaaaggtagattatgctaaagatttctttgcccgtcaagcatttttgactgtt |
300 |
Q |
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| T |
40764087 |
gctggaagaaagatctaaacttcagcccagtattcctcgaaaggatggaaagatagattatgctaaagatttctttgcccgtcaagcatttttgactgtt |
40764186 |
T |
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| Q |
301 |
tctggtcagcttcaagttgagtcttatgcgtgtgctcttagtagtgtgtatacatt |
356 |
Q |
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| T |
40764187 |
tctggtcagcttcaagttgagtcttatgcgtgtgctcttagtagtgtgtatacatt |
40764242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 52 - 142
Target Start/End: Original strand, 40763818 - 40763908
Alignment:
| Q |
52 |
gaagcagaaaggttggagaaggaacagatacagaatcctcctcctactgaatctaatgttgaagctgctaagcttgttgctcaggagaagg |
142 |
Q |
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| T |
40763818 |
gaagcagagaggttggagaaggaactgatacagaatcctcctcctactgaatctgatgttgaagctgctaagcttgttgttcaggagaagg |
40763908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 150; Significance: 3e-79; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 143 - 356
Target Start/End: Original strand, 42911676 - 42911889
Alignment:
| Q |
143 |
agaaggagattactgctgctgtggatgaacttaaaaaggctaaacggaatgtatccaagctggaagaaagatctaaacttcagcccggtattcctcgaaa |
242 |
Q |
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| T |
42911676 |
agaaggagattagtgctgctgtggctgaacttaaaaaagcaaaagaaaatgtatccaagctggaggaaagatctaaacttcagcccggtattcctcgaaa |
42911775 |
T |
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| Q |
243 |
agatggaaaggtagattatgctaaagatttctttgcccgtcaagcatttttgactgtttctggtcagcttcaagttgagtcttatgcgtgtgctcttagt |
342 |
Q |
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| T |
42911776 |
ggacggaaaggtggattatactaaagatttctttgcccgtcaagcgtttttgactgtttctggtcagcttcaagttgagtcttatgcttgtgctcttagt |
42911875 |
T |
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| Q |
343 |
agtgtgtatacatt |
356 |
Q |
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| T |
42911876 |
cgcgtgtatacatt |
42911889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 52 - 142
Target Start/End: Original strand, 42911546 - 42911636
Alignment:
| Q |
52 |
gaagcagaaaggttggagaaggaacagatacagaatcctcctcctactgaatctaatgttgaagctgctaagcttgttgctcaggagaagg |
142 |
Q |
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| T |
42911546 |
gaagcagagaggttggagaaggaactgatacagaatcctcctccaactgaagctgatgttgaagctgctaagcttgttgttcaggagaagg |
42911636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 42911615 - 42911673
Alignment:
| Q |
1 |
aagcttgttgttcaggagaagggggaggttgtttcacaattaaaaactgcagaagcaga |
59 |
Q |
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| T |
42911615 |
aagcttgttgttcaggagaagggggaggttgtttcacaattgaaatctgcaaaagcaga |
42911673 |
T |
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