View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14374_low_13 (Length: 348)
Name: NF14374_low_13
Description: NF14374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14374_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 330
Target Start/End: Complemental strand, 55240317 - 55239988
Alignment:
| Q |
1 |
tcataattccagtagattagcgttnnnnnnnncatgacatgaggccgactcaatcagatgatgaccatactcacaattacttaccaaccaaccactgact |
100 |
Q |
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| T |
55240317 |
tcataattccagtagattagcgttaaaaaaaacatgacatgaggccgactcaatcagatgatgaccatactcacaattacttaccaaccaaccactgact |
55240218 |
T |
|
| Q |
101 |
tactactttacaaaagccaattcctatttgaatttcaagtgaggttggcagtggcagcagaccaacttacccatccatctgaactcctaataaatatgta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55240217 |
tactactttacaaaagccaattcctatttgaatttcaagtgaggttggcagtggcagcagaccaacttacccatccatctgaactcctaataaatatgta |
55240118 |
T |
|
| Q |
201 |
tagactcaactttctttcttcctttgttgtgtaagtaattcaaaaaatatgcctttctccaattgtcaaaatttaatgtgtcctcctattatttgcaggg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55240117 |
tagactcaactttctttcttcctttgttgtgtaagtaattcaaaaaatatgcctttctccaattgtcaaaatttaatgtgtcctcctattatttgcaggg |
55240018 |
T |
|
| Q |
301 |
tcgttggcaaattaaattaaatgcgttacc |
330 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
55240017 |
tcgttggcaaattaaattaaatgcgttacc |
55239988 |
T |
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