View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14374_low_21 (Length: 252)
Name: NF14374_low_21
Description: NF14374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14374_low_21 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 151; Significance: 5e-80; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 98 - 252
Target Start/End: Original strand, 41916917 - 41917071
Alignment:
| Q |
98 |
tcatgtgaaaaaattgcaatttggttcaattttcacaaacagtttttgtggttcggttcaatttgcaattggtttagttttctccaaaaactaaataatg |
197 |
Q |
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| T |
41916917 |
tcatgtgaaaaaattgcaatttggttcaattttcacaaacagtttttgtggttcggttcaatttgcaattggtttagttttcttcaaaaactaaataatg |
41917016 |
T |
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| Q |
198 |
aaaagacctagacttgagtgacttatgattatgatgaaggccatgtgacatttat |
252 |
Q |
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| T |
41917017 |
aaaagacctagacttgagtgacttatgattatgatgaaggccatgtgacatttat |
41917071 |
T |
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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 61
Target Start/End: Original strand, 41916875 - 41916920
Alignment:
| Q |
16 |
atacaaaaaattatatcggtaaaaatcagcttagcttcgaaatcat |
61 |
Q |
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| T |
41916875 |
atacaaaaatttatatccgtaaaaatcagcttagcttcgaaatcat |
41916920 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 16 - 231
Target Start/End: Original strand, 30911057 - 30911267
Alignment:
| Q |
16 |
atacaaaaaattatatcggtaaaaatcagcttagcttcgaaatcatagtgaaccgaagcatataaaactagttaagtttaactcatgtgaaaaaattgca |
115 |
Q |
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| T |
30911057 |
atacaaaaaatgaaatcggtaaaaatcagcccagctttgaaatcatagtgaaccgatgcatataaaattagttaattttgattcaagtgaaaaaattgca |
30911156 |
T |
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| Q |
116 |
atttggttcaattttcacaaacagtttttgtggttcggttcaatttgcaattggtttagttttctccaaaaactaaataatgaaaagacctagacttgag |
215 |
Q |
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| T |
30911157 |
atttggttcaattttcagtaactgtttttgtggtttggttcaat------ttggtttagttttctccaaaacctaaataatgaaaagacctagacttgag |
30911250 |
T |
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| Q |
216 |
tg-acttatgattatga |
231 |
Q |
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| T |
30911251 |
tgaacttatgattatga |
30911267 |
T |
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