View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14374_low_23 (Length: 237)
Name: NF14374_low_23
Description: NF14374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14374_low_23 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 52092338 - 52092119
Alignment:
| Q |
1 |
tgattattattgattgattagaagtaaaggaaacccattaagtatcttgtttgtggagatagaattcatgtgataaaaatagttgcaagttgtgtgtgta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
52092338 |
tgattattattgattgattagaagtaaaggaaacccattaagtatcttgtttgtggagatagaattcatgtgataaaaatagttgcaggttgtgtgtgta |
52092239 |
T |
|
| Q |
101 |
tctttgtttatactttgtctatgtgctgttatgtgttccaaagcatggaagtgtaaaaggaaccttttgtcagcttcttttgcatcttttccgagctcaa |
200 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52092238 |
tctttgtttatac-ttgtctatgtgctgttatgtgttccaaagcatggaagtgtaaaaggaaccttttgtcagcttcttttgcatcttttccgagctcaa |
52092140 |
T |
|
| Q |
201 |
tatagttcccattaatgatat |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
52092139 |
tatagttcccattaatgatat |
52092119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 35 - 185
Target Start/End: Complemental strand, 52082082 - 52081945
Alignment:
| Q |
35 |
ccattaagtatcttgtttgtggagatagaattcatgtgataaaaatagttgcaagttgtgtgtgtatctttgtttatactttgtctatgtgctgttatgt |
134 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||| |||||||| | |||| |||||| |
|
|
| T |
52082082 |
ccattaagtatcttgtttgtggagatagcattcatgtgataaaaatagttccaag--ctgtgtgtatcattgtttatgc-ttgt----------ttatgt |
52081996 |
T |
|
| Q |
135 |
gttccaaagcatggaagtgtaaaaggaaccttttgtcagcttcttttgcat |
185 |
Q |
| |
|
||||||||| |||||||||||||||| || ||||||| | ||||||||||| |
|
|
| T |
52081995 |
gttccaaaggatggaagtgtaaaaggtacattttgtcggtttcttttgcat |
52081945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 52082138 - 52082105
Alignment:
| Q |
1 |
tgattattattgattgattagaagtaaaggaaac |
34 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
52082138 |
tgattattattgattgattagaagtaaaggaaac |
52082105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University