View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14374_low_27 (Length: 218)
Name: NF14374_low_27
Description: NF14374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14374_low_27 |
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| [»] chr7 (7 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 18 - 218
Target Start/End: Complemental strand, 47606642 - 47606442
Alignment:
| Q |
18 |
acaagcatcctctcaaagagatggaacccactatggctctcagttcttaattttcacttcgacgaccaaaccttccaagactttatctcatttcgccact |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47606642 |
acaagcatcctctcaaagagatggaacccactatggctctcagttcttaattttcacttcgacgaccaaaccttccaagactttatctcatttcgccact |
47606543 |
T |
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| Q |
118 |
ttgtcttgtctgcctttctctcgcgacaaatcacactacccctccaatcattccgcctcaaatgttcaaaagagtctagcttccagctacacgatatcaa |
217 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47606542 |
ttgtcttgtctgcctttctctcgcgacaaatgacactacccctccaatcattccacctcaaatgttcaaaagagtctagcttccagctacacgatatcaa |
47606443 |
T |
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| Q |
218 |
t |
218 |
Q |
| |
|
| |
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| T |
47606442 |
t |
47606442 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 18 - 218
Target Start/End: Original strand, 19926531 - 19926731
Alignment:
| Q |
18 |
acaagcatcctctcaaagagatggaacccactatggctctcagttcttaattttcacttcgacgaccaaaccttccaagactttatctcatttcgccact |
117 |
Q |
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|||||||| ||||||||||||||||||||| ||||||| |||||||||| | |||||||||| ||| ||||||| ||| || | || ||| |||| | |
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| T |
19926531 |
acaagcattctctcaaagagatggaacccattatggctatcagttcttattcttcacttcgaagacgaaacctttcaaaacatggaatcctttagccatt |
19926630 |
T |
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| Q |
118 |
ttgtcttgtctgcctttctctcgcgacaaatcacactacccctccaatcattccgcctcaaatgttcaaaagagtctagcttccagctacacgatatcaa |
217 |
Q |
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| T |
19926631 |
ttatgtcctctgtctttcttttacgagacattactttacccctccgatcattccacctcaaatgttcaaaagcctctggcatccagccacaagatatcaa |
19926730 |
T |
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| Q |
218 |
t |
218 |
Q |
| |
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| |
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| T |
19926731 |
t |
19926731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 19934445 - 19934518
Alignment:
| Q |
18 |
acaagcatcctctcaaagagatggaacccactatggctctcagttcttaattttcacttcgacgaccaaacctt |
91 |
Q |
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|||||||| || |||||||||||||||||| ||||||| |||||||||| | |||||||||| ||| ||||||| |
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| T |
19934445 |
acaagcattctatcaaagagatggaacccattatggctatcagttcttattcttcacttcgaagacgaaacctt |
19934518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 19965584 - 19965657
Alignment:
| Q |
18 |
acaagcatcctctcaaagagatggaacccactatggctctcagttcttaattttcacttcgacgaccaaacctt |
91 |
Q |
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|||||||| || |||||||||||||||||| ||||||| |||||||||| | |||||||||| ||| ||||||| |
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| T |
19965584 |
acaagcattctatcaaagagatggaacccattatggctatcagttcttattcttcacttcgaagacgaaacctt |
19965657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 19974818 - 19974773
Alignment:
| Q |
18 |
acaagcatcctctcaaagagatggaacccactatggctctcagttc |
63 |
Q |
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| T |
19974818 |
acaagcatcctttcaaagagatggaaaccactatggctctcagttc |
19974773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 19981514 - 19981470
Alignment:
| Q |
19 |
caagcatcctctcaaagagatggaacccactatggctctcagttc |
63 |
Q |
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||||| ||||||||||||||||||| ||| ||||||||||||||| |
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| T |
19981514 |
caagcgtcctctcaaagagatggaaaccattatggctctcagttc |
19981470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 20001195 - 20001151
Alignment:
| Q |
18 |
acaagcatcctctcaaagagatggaacccactatggctctcagtt |
62 |
Q |
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|||||||||||||| ||||||||||| ||| |||||||||||||| |
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| T |
20001195 |
acaagcatcctctctaagagatggaaaccaatatggctctcagtt |
20001151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 3938689 - 3938737
Alignment:
| Q |
16 |
caacaagcatcctctcaaagagatggaacccactatggctctcagttct |
64 |
Q |
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|||||||||||||||| |||| |||||||| |||||||||||||||||| |
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| T |
3938689 |
caacaagcatcctctccaagaaatggaaccaactatggctctcagttct |
3938737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 37418340 - 37418383
Alignment:
| Q |
18 |
acaagcatcctctcaaagagatggaacccactatggctctcagt |
61 |
Q |
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|||||||||||||||||||| ||||||||| | ||||||||||| |
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| T |
37418340 |
acaagcatcctctcaaagaggtggaacccattgtggctctcagt |
37418383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 6687241 - 6687284
Alignment:
| Q |
18 |
acaagcatcctctcaaagagatggaacccactatggctctcagt |
61 |
Q |
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|||||||||||||| ||||||||||| ||| ||||||||||||| |
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| T |
6687241 |
acaagcatcctctcgaagagatggaaaccattatggctctcagt |
6687284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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