View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14374_low_5 (Length: 481)
Name: NF14374_low_5
Description: NF14374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14374_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 233; Significance: 1e-128; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 224 - 464
Target Start/End: Complemental strand, 19959124 - 19958884
Alignment:
| Q |
224 |
atgaaacacaaacctgatcagtgttgttaagatcaacaatcttattcttttcaagaatcttaacagcaaaaaattgtccacaatcagtatccctagccaa |
323 |
Q |
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| T |
19959124 |
atgaaacacaaacctgatcagtgttattaagatcaacaatcttattcttttcaagaatcttaacagcaaaaaattgtccacaatcagtatccctagccaa |
19959025 |
T |
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| Q |
324 |
tttaacttttccaaaatttccttcaccaagtgtttttcccaattcgtatttccctaatcgcactatttttccttcaatcctccttgcttgatttatgatc |
423 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19959024 |
tttcacttttccaaaatttccttcaccaagtgtttttcccaattcgtatttccctaatcgcactatttttccttcaatcctccttgcttgatttatgatc |
19958925 |
T |
|
| Q |
424 |
accattcccaacaaaaattctctctctttgaccctctttct |
464 |
Q |
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| T |
19958924 |
accattcccaacaaaaattctctctctttgaccctctttct |
19958884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 19959421 - 19959313
Alignment:
| Q |
1 |
ctcgtataatctaacaacattaggatgtttcagaagcttcaaagttgatatctccctctttatctgaaattttcaaccatcacaaatcaaaataaactta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19959421 |
ctcgtataatctaacaacattaggatgtttcagaagcttcaaggttgatatctccctctttatctgaaattttcaaccatcacaaatcaaaataaactta |
19959322 |
T |
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| Q |
101 |
gtttttcaa |
109 |
Q |
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||||||||| |
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| T |
19959321 |
gtttttcaa |
19959313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 185 - 215
Target Start/End: Complemental strand, 19959180 - 19959150
Alignment:
| Q |
185 |
atcaatttgtaataaaaacacaaaagagatt |
215 |
Q |
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| T |
19959180 |
atcaatttgtaataaaaacacaaaagagatt |
19959150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 110; Significance: 3e-55; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 278 - 435
Target Start/End: Original strand, 932233 - 932390
Alignment:
| Q |
278 |
gaatcttaacagcaaaaaattgtccacaatcagtatccctagccaatttaacttttccaaaatttccttcaccaagtgtttttcccaattcgtatttccc |
377 |
Q |
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||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| || |
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| T |
932233 |
gaatcttaacagcaaaaaattgtccacaatcggtacccctagccaatttaacttttccaaaatttccttcaccaagtgtttttcctaattcatattttcc |
932332 |
T |
|
| Q |
378 |
taatcgcactatttttccttcaatcctccttgcttgatttatgatcaccattcccaac |
435 |
Q |
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|||| |||||| |||||||||| |||| |||| ||| ||||||||||||||| ||||| |
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| T |
932333 |
taattgcactacttttccttcattccttcttgtttggtttatgatcaccatttccaac |
932390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 441
Target Start/End: Complemental strand, 20244513 - 20244472
Alignment:
| Q |
400 |
atcctccttgcttgatttatgatcaccattcccaacaaaaat |
441 |
Q |
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|||||||||||||||||||| |||||||||| ||| |||||| |
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| T |
20244513 |
atcctccttgcttgatttattatcaccattctcaaaaaaaat |
20244472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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