View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14374_low_9 (Length: 408)

Name: NF14374_low_9
Description: NF14374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14374_low_9
NF14374_low_9
[»] chr4 (21 HSPs)
chr4 (21-325)||(55240424-55240728)
chr4 (36-142)||(582248-582354)
chr4 (59-133)||(54137258-54137332)
chr4 (29-132)||(8837003-8837107)
chr4 (173-261)||(11784977-11785065)
chr4 (229-311)||(23564540-23564622)
chr4 (227-291)||(36165464-36165528)
chr4 (44-139)||(23564510-23564605)
chr4 (218-311)||(9928957-9929051)
chr4 (178-287)||(55240381-55240488)
chr4 (238-291)||(18523020-18523073)
chr4 (175-292)||(36165892-36166009)
chr4 (36-140)||(18523164-18523268)
chr4 (73-159)||(36165608-36165693)
chr4 (175-300)||(23564275-23564400)
chr4 (239-311)||(8837026-8837098)
chr4 (71-133)||(9706232-9706293)
chr4 (36-132)||(9928934-9929031)
chr4 (238-291)||(18523215-18523268)
chr4 (60-101)||(55241497-55241538)
chr4 (45-133)||(36165420-36165508)
[»] chr1 (11 HSPs)
chr1 (53-140)||(10199964-10200051)
chr1 (247-291)||(3371665-3371709)
chr1 (238-286)||(12178099-12178147)
chr1 (39-103)||(31061253-31061317)
chr1 (36-140)||(49293023-49293127)
chr1 (48-102)||(35536769-35536823)
chr1 (61-127)||(40883985-40884051)
chr1 (227-300)||(10645792-10645865)
chr1 (71-131)||(30602442-30602502)
chr1 (175-253)||(28843427-28843505)
chr1 (227-287)||(25685733-25685793)
[»] chr5 (11 HSPs)
chr5 (52-140)||(42042130-42042218)
chr5 (238-311)||(8402114-8402187)
chr5 (36-133)||(8401961-8402058)
chr5 (60-127)||(12835809-12835876)
chr5 (238-311)||(8401985-8402058)
chr5 (36-101)||(28431955-28432020)
chr5 (36-128)||(8402095-8402187)
chr5 (36-107)||(6423995-6424066)
chr5 (72-131)||(33408153-33408212)
chr5 (58-107)||(12867663-12867712)
chr5 (227-287)||(6423984-6424044)
[»] scaffold1432 (2 HSPs)
scaffold1432 (36-102)||(932-998)
scaffold1432 (173-300)||(936-1063)
[»] chr8 (7 HSPs)
chr8 (36-101)||(32884526-32884591)
chr8 (36-131)||(30525232-30525327)
chr8 (47-101)||(32879693-32879747)
chr8 (229-292)||(30525435-30525498)
chr8 (238-300)||(12704272-12704333)
chr8 (175-298)||(28883660-28883779)
chr8 (238-287)||(30525232-30525281)
[»] chr3 (16 HSPs)
chr3 (227-311)||(50196900-50196984)
chr3 (36-140)||(20490928-20491033)
chr3 (79-133)||(22312323-22312377)
chr3 (36-102)||(30130780-30130846)
chr3 (238-300)||(30135504-30135566)
chr3 (238-300)||(30141633-30141695)
chr3 (238-300)||(30145055-30145117)
chr3 (227-300)||(30130784-30130857)
chr3 (36-102)||(30135500-30135566)
chr3 (36-102)||(30141629-30141695)
chr3 (36-102)||(30145051-30145117)
chr3 (227-291)||(20490917-20490982)
chr3 (173-292)||(11047444-11047563)
chr3 (53-107)||(50196928-50196982)
chr3 (92-133)||(50197017-50197058)
chr3 (173-282)||(50197098-50197207)
[»] chr2 (8 HSPs)
chr2 (61-196)||(36201946-36202081)
chr2 (37-129)||(43829783-43829875)
chr2 (94-138)||(27492218-27492262)
chr2 (173-265)||(36053556-36053648)
chr2 (238-300)||(18203095-18203157)
chr2 (238-300)||(30841546-30841608)
chr2 (222-279)||(43829620-43829677)
chr2 (239-288)||(43829826-43829875)
[»] chr7 (13 HSPs)
chr7 (53-140)||(36496192-36496279)
chr7 (92-141)||(5473191-5473240)
chr7 (47-126)||(8745836-8745915)
chr7 (222-291)||(8745873-8745942)
chr7 (36-97)||(23972473-23972534)
chr7 (68-121)||(31495468-31495521)
chr7 (72-123)||(33804305-33804356)
chr7 (48-133)||(6720803-6720887)
chr7 (238-287)||(23972473-23972522)
chr7 (175-220)||(29155797-29155842)
chr7 (175-292)||(41243213-41243330)
chr7 (36-85)||(41243218-41243267)
chr7 (260-292)||(35035425-35035457)
[»] chr6 (3 HSPs)
chr6 (238-292)||(10742262-10742316)
chr6 (188-282)||(27134291-27134385)
chr6 (53-130)||(12425715-12425792)
[»] scaffold0236 (1 HSPs)
scaffold0236 (36-84)||(22417-22465)


Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 21 - 325
Target Start/End: Original strand, 55240424 - 55240728
Alignment:
Q  21 tcaggttattgagtgtaaatatacttgagtatcctcatcctttgagttagtttttgggatgagattcaagtctatttaacatggtattagagtcgggtta 120  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||    
T  55240424 tcaggttgttgagtgtaaatatacttgagtatcctcatcctttgagttagcttttgggatgagattcaagccaatttaacatggtattagagtcgggtta 55240523  T
Q  121 aggattgcaatgtaggaattatccccaagctcacgctagacgtgannnnnnntgttgaagttatttgtagtttgttgttagtctcgtattgctcaaattt 220  Q
    | ||||||||||||||||||   | |||||||  |||||||||||       |||||||||| ||||||||||||||||||| ||||||||||||| |||    
T  55240524 aagattgcaatgtaggaattggactcaagctcttgctagacgtgagggtggatgttgaagttgtttgtagtttgttgttagtttcgtattgctcaagttt 55240623  T
Q  221 tcggaatgttgagtatgtaaatatgtttgagtaccctcatcttttgagcgagcttttgggatgagatccaaatctatttagcatgttatcattgaaacca 320  Q
    || | ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  55240624 tcaggatgttgagtatataaatatgcttgagtaccctcatcttttgagcgagcttttgggatgagatccaaatctatttagcatggtatcattgaaacca 55240723  T
Q  321 ttatt 325  Q
    |||||    
T  55240724 ttatt 55240728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 36 - 142
Target Start/End: Original strand, 582248 - 582354
Alignment:
Q  36 taaatatacttgagtatcctcatcctttgagttagtttttgggatgagattcaagtctatttaacatggtattagagtcgggttaaggattgcaatgtag 135  Q
    ||||||||||||| || | | |||||||||||||  ||||  ||||||||||||||  |||||||||||||| ||||||||||| | ||||||||||| |    
T  582248 taaatatacttgaatacctttatcctttgagttaacttttaagatgagattcaagttcatttaacatggtatcagagtcgggtttaagattgcaatgtgg 582347  T
Q  136 gaattat 142  Q
    |||||||    
T  582348 gaattat 582354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 59 - 133
Target Start/End: Complemental strand, 54137332 - 54137258
Alignment:
Q  59 cctttgagttagtttttgggatgagattcaagtctatttaacatggtattagagtcgggttaaggattgcaatgt 133  Q
    ||||| |||||| |||||||||||||||||||   | |||||||||||| |||||||||||||||||||||||||    
T  54137332 ccttttagttagcttttgggatgagattcaagctcaattaacatggtatcagagtcgggttaaggattgcaatgt 54137258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 29 - 132
Target Start/End: Complemental strand, 8837107 - 8837003
Alignment:
Q  29 ttgagtgtaaa-tatacttgagtatcctcatcctttgagttagtttttgggatgagattcaagtctatttaacatggtattagagtcgggttaaggattg 127  Q
    ||||||||||| |||  ||||||| |||||| ||||||| ||   |||||||||||||||||  |||||||||||||||| | ||| |||||||||||||    
T  8837107 ttgagtgtaaaatatgtttgagtaccctcattctttgagctaaactttgggatgagattcaaacctatttaacatggtatcacagttgggttaaggattg 8837008  T
Q  128 caatg 132  Q
    |||||    
T  8837007 caatg 8837003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 173 - 261
Target Start/End: Original strand, 11784977 - 11785065
Alignment:
Q  173 tgttgaagttatttgtagtttgttgttagtctcgtattgctcaaattttcggaatgttgagtatgtaaatatgtttgagtaccctcatc 261  Q
    |||||||||| |||||||||||||||||||| |  ||| ||||  || ||||| |||||||| | ||||||||||||||||||||||||    
T  11784977 tgttgaagttgtttgtagtttgttgttagtcccacattactcaggttctcggactgttgagtgtataaatatgtttgagtaccctcatc 11785065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 229 - 311
Target Start/End: Complemental strand, 23564622 - 23564540
Alignment:
Q  229 ttgagtatgtaaatatgtttgagtaccctcatcttttgagcgagcttttgggatgagatccaaatctatttagcatgttatca 311  Q
    |||||| || || |||| ||||||||||||||| ||||||| | |||||||||||||||||||| ||||||| |||| |||||    
T  23564622 ttgagtgtgcaagtatgcttgagtaccctcatcctttgagctaacttttgggatgagatccaaacctatttaacatggtatca 23564540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 227 - 291
Target Start/End: Complemental strand, 36165528 - 36165464
Alignment:
Q  227 tgttgagtatgtaaatatgtttgagtaccctcatcttttgagcgagcttttgggatgagatccaa 291  Q
    |||||||| | |||| |||||||||||||||||||||||| || || ||||||||||||||||||    
T  36165528 tgttgagtgtataaagatgtttgagtaccctcatcttttgtgctagattttgggatgagatccaa 36165464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 44 - 139
Target Start/End: Complemental strand, 23564605 - 23564510
Alignment:
Q  44 cttgagtatcctcatcctttgagttagtttttgggatgagattcaagtctatttaacatggtattagagtcgggttaaggattgcaatgtaggaat 139  Q
    |||||||| |||||||||||||| ||  |||||||||||||| |||  |||||||||||||||| |||| | |||||| ||||  ||||| |||||    
T  23564605 cttgagtaccctcatcctttgagctaacttttgggatgagatccaaacctatttaacatggtatcagagcctggttaaagattataatgtgggaat 23564510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 218 - 311
Target Start/End: Complemental strand, 9929051 - 9928957
Alignment:
Q  218 ttttcggaatgttgagtatgtaaatatgtttgagtaccctcatcttttgagcgagcttttgggatgaga-tccaaatctatttagcatgttatca 311  Q
    ||||||||  ||||||||| |||||||||||||||| ||||||||||||||| | ||||||| || ||| |||||  ||||||| |||| |||||    
T  9929051 ttttcggatcgttgagtatataaatatgtttgagtatcctcatcttttgagctaacttttggaataagattccaagcctatttaacatggtatca 9928957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 178 - 287
Target Start/End: Original strand, 55240381 - 55240488
Alignment:
Q  178 aagttatttgtagtttgttgttagtctcgtattgctcaaattttcggaatgttgagtatgtaaatatgtttgagtaccctcatcttttgagcgagctttt 277  Q
    ||||| ||||||||||||||||||| |  |||||||||  ||||| |  |||||||  |||||||||  ||||||| ||||||| ||||||  |||||||    
T  55240381 aagttgtttgtagtttgttgttagttttatattgctcaggttttcaggttgttgag--tgtaaatatacttgagtatcctcatcctttgagttagctttt 55240478  T
Q  278 gggatgagat 287  Q
    ||||||||||    
T  55240479 gggatgagat 55240488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 238 - 291
Target Start/End: Complemental strand, 18523073 - 18523020
Alignment:
Q  238 taaatatgtttgagtaccctcatcttttgagcgagcttttgggatgagatccaa 291  Q
    |||||||| ||||||||| ||||| ||||||||||||||||| |||||||||||    
T  18523073 taaatatgcttgagtaccatcatcctttgagcgagcttttggtatgagatccaa 18523020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 175 - 292
Target Start/End: Complemental strand, 36166009 - 36165892
Alignment:
Q  175 ttgaagttatttgtagtttgttgttagtctcgtattgctcaaattttcggaatgttgagtatgtaaatatgtttgagtaccctcatcttttgagcgagct 274  Q
    |||||||| |||||||||| || ||||||||  |||  |||   |||||| ||||||||| | |||| ||||||||| ||||||||| ||| ||| | ||    
T  36166009 ttgaagttgtttgtagtttatttttagtctcacattattcaggctttcgggatgttgagtgtataaacatgtttgagcaccctcatcctttaagctaact 36165910  T
Q  275 tttgggatgagatccaaa 292  Q
    |||| |||||||||||||    
T  36165909 tttgcgatgagatccaaa 36165892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 36 - 140
Target Start/End: Complemental strand, 18523268 - 18523164
Alignment:
Q  36 taaatatacttgagtatcctcatcctttgagttagtttttgggatgagattcaagtctatttaacatggtattagagtcgggttaaggattgcaatgtag 135  Q
    |||||||  ||||||| |||||||||||||| ||  ||||||||  |||| |||| |||||| |||  |||| |||| ||||||||| |||||||||| |    
T  18523268 taaatatgtttgagtaccctcatcctttgaggtatcttttgggagcagatccaagcctatttcacagagtatcagagccgggttaagaattgcaatgttg 18523169  T
Q  136 gaatt 140  Q
    |||||    
T  18523168 gaatt 18523164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 73 - 159
Target Start/End: Complemental strand, 36165693 - 36165608
Alignment:
Q  73 tttgggatgagattcaagtctatttaacatggtattagagtcgggttaaggattgcaatgtaggaattatccccaagctcacgctag 159  Q
    ||||||||||||| |||||||||| |||||||||||||||  | | ||| ||||||||||| |||||||  | || |||||||||||    
T  36165693 tttgggatgagat-caagtctattaaacatggtattagagctgagataaagattgcaatgtgggaattagactcaggctcacgctag 36165608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 175 - 300
Target Start/End: Complemental strand, 23564400 - 23564275
Alignment:
Q  175 ttgaagttatttgtagtttgttgttagtctcgtattgctcaaattttcggaatgttgagtatgtaaatatgtttgagtaccctcatcttttgagcgagct 274  Q
    |||||||| ||||||||||||| || ||| |  ||||||||  ||||| |  |||||||| | ||| ||||||| || ||| ||||||||| ||  |||     
T  23564400 ttgaagttgtttgtagtttgttatttgtcccacattgctcaggttttcaggttgttgagtgtataagtatgttttagaaccttcatcttttaagttagca 23564301  T
Q  275 tttgggatgagatccaaatctattta 300  Q
    ||||||||||||||||| || |||||    
T  23564300 tttgggatgagatccaagtcaattta 23564275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 311
Target Start/End: Complemental strand, 8837098 - 8837026
Alignment:
Q  239 aaatatgtttgagtaccctcatcttttgagcgagcttttgggatgagatccaaatctatttagcatgttatca 311  Q
    ||||||||||||||||||||||  ||||||| |   ||||||||||||| |||| ||||||| |||| |||||    
T  8837098 aaatatgtttgagtaccctcattctttgagctaaactttgggatgagattcaaacctatttaacatggtatca 8837026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 71 - 133
Target Start/End: Original strand, 9706232 - 9706293
Alignment:
Q  71 tttttgggatgagattcaagtctatttaacatggtattagagtcgggttaaggattgcaatgt 133  Q
    |||||| | |||||| |||||| ||||| |||||||| || ||||||||||||||||||||||    
T  9706232 tttttgagttgagatccaagtc-atttagcatggtatcagggtcgggttaaggattgcaatgt 9706293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 132
Target Start/End: Complemental strand, 9929031 - 9928934
Alignment:
Q  36 taaatatacttgagtatcctcatcctttgagttagtttttgggatgagatt-caagtctatttaacatggtattagagtcgggttaaggattgcaatg 132  Q
    |||||||  ||||||||||||||| |||||| ||  |||||| || ||||| |||| |||||||||||||||| | ||| || |||| ||||| ||||    
T  9929031 taaatatgtttgagtatcctcatcttttgagctaacttttggaataagattccaagcctatttaacatggtatcaaagttggtttaaagattgtaatg 9928934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 291
Target Start/End: Complemental strand, 18523268 - 18523215
Alignment:
Q  238 taaatatgtttgagtaccctcatcttttgagcgagcttttgggatgagatccaa 291  Q
    |||||||||||||||||||||||| ||||||  | |||||||||  ||||||||    
T  18523268 taaatatgtttgagtaccctcatcctttgaggtatcttttgggagcagatccaa 18523215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 101
Target Start/End: Original strand, 55241497 - 55241538
Alignment:
Q  60 ctttgagttagtttttgggatgagattcaagtctatttaaca 101  Q
    ||||||| ||| |||||||||||||||||||| |||||||||    
T  55241497 ctttgagctagcttttgggatgagattcaagtttatttaaca 55241538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 45 - 133
Target Start/End: Complemental strand, 36165508 - 36165420
Alignment:
Q  45 ttgagtatcctcatcctttgagttagtttttgggatgagattcaagtctatttaacatggtattagagtcgggttaaggattgcaatgt 133  Q
    ||||||| ||||||| |||| | ||| |||||||||||||| |||| | ||||| |||||||  | |  | ||||||||||||||||||    
T  36165508 ttgagtaccctcatcttttgtgctagattttgggatgagatccaagcccatttaccatggtaacaaaaccaggttaaggattgcaatgt 36165420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 53 - 140
Target Start/End: Original strand, 10199964 - 10200051
Alignment:
Q  53 cctcatcctttgagttagtttttgggatgagattcaagtctatttaacatggtattagagtcgggttaaggattgcaatgtaggaatt 140  Q
    ||||||||||||| |||  ||||||||||||||||||| | ||||||||||||||| | ||||||||||| |||||||||| ||||||    
T  10199964 cctcatcctttgaattaacttttgggatgagattcaagcccatttaacatggtattggtgtcgggttaagaattgcaatgtgggaatt 10200051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 247 - 291
Target Start/End: Original strand, 3371665 - 3371709
Alignment:
Q  247 ttgagtaccctcatcttttgagcgagcttttgggatgagatccaa 291  Q
    ||||||||||||||||||||||  |||||||||||||||||||||    
T  3371665 ttgagtaccctcatcttttgaggtagcttttgggatgagatccaa 3371709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 238 - 286
Target Start/End: Complemental strand, 12178147 - 12178099
Alignment:
Q  238 taaatatgtttgagtaccctcatcttttgagcgagcttttgggatgaga 286  Q
    |||||||||||||||||||||||| ||||| | ||||||||||||||||    
T  12178147 taaatatgtttgagtaccctcatcctttgacctagcttttgggatgaga 12178099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 39 - 103
Target Start/End: Original strand, 31061253 - 31061317
Alignment:
Q  39 atatacttgagtatcctcatcctttgagttagtttttgggatgagattcaagtctatttaacatg 103  Q
    ||||| ||||||||| ||||| |||||||||| |||| | |||||||||||| ||||||||||||    
T  31061253 atatatttgagtatcatcatcttttgagttagcttttagaatgagattcaagcctatttaacatg 31061317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 36 - 140
Target Start/End: Original strand, 49293023 - 49293127
Alignment:
Q  36 taaatatacttgagtatcctcatcctttgagttagtttttgggatgagattcaagtctatttaacatggtattagagtcgggttaaggattgcaatgtag 135  Q
    |||||||  |||| || |||| ||| ||||| ||| ||||| ||||||||||| |  ||||| || | |||||||||||||||||||||| ||||||| |    
T  49293023 taaatatttttgaataccctcgtcccttgagctagcttttgagatgagattcaggcatattttacgtcgtattagagtcgggttaaggatcgcaatgtgg 49293122  T
Q  136 gaatt 140  Q
    |||||    
T  49293123 gaatt 49293127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 102
Target Start/End: Complemental strand, 35536823 - 35536769
Alignment:
Q  48 agtatcctcatcctttgagttagtttttgggatgagattcaagtctatttaacat 102  Q
    |||||||||||| |||||||||  ||||||||||||||| ||||| |||||||||    
T  35536823 agtatcctcatcatttgagttaacttttgggatgagattgaagtccatttaacat 35536769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 127
Target Start/End: Original strand, 40883985 - 40884051
Alignment:
Q  61 tttgagttagtttttgggatgagattcaagtctatttaacatggtattagagtcgggttaaggattg 127  Q
    |||||||||||||||| ||||  || ||||   ||||||||||||||||||||||||||||| ||||    
T  40883985 tttgagttagtttttgtgatgtaatccaagctgatttaacatggtattagagtcgggttaagaattg 40884051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 227 - 300
Target Start/End: Original strand, 10645792 - 10645865
Alignment:
Q  227 tgttgagtatgtaaatatgtttgagtaccctcatcttttgagcgagcttttgggatgagatccaaatctattta 300  Q
    |||||||| | |||||||||||||||||||||||| || |||| | |||||  ||||||||| ||| |||||||    
T  10645792 tgttgagtgtataaatatgtttgagtaccctcatccttagagctatcttttaagatgagatcaaaacctattta 10645865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 131
Target Start/End: Original strand, 30602442 - 30602502
Alignment:
Q  71 tttttgggatgagattcaagtctatttaacatggtattagagtcgggttaaggattgcaat 131  Q
    |||||| ||| |||| |||  |||||||||||| |||||||||| ||||||||||||||||    
T  30602442 tttttgagataagatccaaacctatttaacatgatattagagtcaggttaaggattgcaat 30602502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 175 - 253
Target Start/End: Complemental strand, 28843505 - 28843427
Alignment:
Q  175 ttgaagttatttgtagtttgttgttagtctcgtattgctcaaattttcggaatgttgagtatgtaaatatgtttgagta 253  Q
    |||||||| ||||||||||||| ||||| ||  || |||||| ||||||||  ||||||| | |||||||| |||||||    
T  28843505 ttgaagttgtttgtagtttgtttttagtttcacatcgctcaagttttcggaccgttgagtgtataaatatgcttgagta 28843427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 227 - 287
Target Start/End: Original strand, 25685733 - 25685793
Alignment:
Q  227 tgttgagtatgtaaatatgtttgagtaccctcatcttttgagcgagcttttgggatgagat 287  Q
    |||||||| | ||||||||||||| ||| |||||| ||||||| ||||||| |||| ||||    
T  25685733 tgttgagtgtataaatatgtttgaatactctcatcatttgagctagcttttaggataagat 25685793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 7e-19; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 52 - 140
Target Start/End: Original strand, 42042130 - 42042218
Alignment:
Q  52 tcctcatcctttgagttagtttttgggatgagattcaagtctatttaacatggtattagagtcgggttaaggattgcaatgtaggaatt 140  Q
    ||||||| | ||||| |||||||||||||||||| |||   ||||||||||||||| |||||||||||||||||||| |||| ||||||    
T  42042130 tcctcattcattgagctagtttttgggatgagatccaaacttatttaacatggtatcagagtcgggttaaggattgcgatgtgggaatt 42042218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 238 - 311
Target Start/End: Complemental strand, 8402187 - 8402114
Alignment:
Q  238 taaatatgtttgagtaccctcatcttttgagcgagcttttgggatgagatccaaatctatttagcatgttatca 311  Q
    ||||||||||||||||||||| || ||||||| | |||||||||||| |||||||| |||||| |||| |||||    
T  8402187 taaatatgtttgagtaccctcctcctttgagctaacttttgggatgaaatccaaatttatttaacatggtatca 8402114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 133
Target Start/End: Complemental strand, 8402058 - 8401961
Alignment:
Q  36 taaatatacttgagtatcctcatcctttgagttagtttttgggatgagattcaagtctatttaacatggtattagagtcgggttaaggattgcaatgt 133  Q
    ||||||| |||||||| |||| ||||||||| ||  |||||| ||||||| |||   ||||||||||||||| |||| |||||||| |||||| ||||    
T  8402058 taaatatgcttgagtaccctcctcctttgagctaacttttggaatgagatccaaacttatttaacatggtatcagagccgggttaatgattgcgatgt 8401961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 60 - 127
Target Start/End: Complemental strand, 12835876 - 12835809
Alignment:
Q  60 ctttgagttagtttttgggatgagattcaagtctatttaacatggtattagagtcgggttaaggattg 127  Q
    ||||||||||||||| |||||||||||||||  |||||||||| |||| | | || ||||||||||||    
T  12835876 ctttgagttagttttcgggatgagattcaagattatttaacatagtatcaaaatcaggttaaggattg 12835809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 238 - 311
Target Start/End: Complemental strand, 8402058 - 8401985
Alignment:
Q  238 taaatatgtttgagtaccctcatcttttgagcgagcttttgggatgagatccaaatctatttagcatgttatca 311  Q
    |||||||| |||||||||||| || ||||||| | ||||||| ||||||||||||  |||||| |||| |||||    
T  8402058 taaatatgcttgagtaccctcctcctttgagctaacttttggaatgagatccaaacttatttaacatggtatca 8401985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 36 - 101
Target Start/End: Complemental strand, 28432020 - 28431955
Alignment:
Q  36 taaatatacttgagtatcctcatcctttgagttagtttttgggatgagattcaagtctatttaaca 101  Q
    ||||||| |||||||||||||||||||| |  ||| |||||| |||| ||||||| ||||||||||    
T  28432020 taaatatgcttgagtatcctcatcctttaaactagcttttggaatgaaattcaagcctatttaaca 28431955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 128
Target Start/End: Complemental strand, 8402187 - 8402095
Alignment:
Q  36 taaatatacttgagtatcctcatcctttgagttagtttttgggatgagattcaagtctatttaacatggtattagagtcgggttaaggattgc 128  Q
    |||||||  ||||||| |||| ||||||||| ||  ||||||||||| || ||| | ||||||||||||||| | || |||||||| ||||||    
T  8402187 taaatatgtttgagtaccctcctcctttgagctaacttttgggatgaaatccaaatttatttaacatggtatcaaagccgggttaatgattgc 8402095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 36 - 107
Target Start/End: Original strand, 6423995 - 6424066
Alignment:
Q  36 taaatatacttgagtatcctcatcctttgagttagtttttgggatgagattcaagtctatttaacatggtat 107  Q
    |||||||  ||||||||| ||||| ||| || |||||||| |||||||||||||   |||||||||||||||    
T  6423995 taaatatgtttgagtatcatcatcttttaagctagtttttaggatgagattcaatcttatttaacatggtat 6424066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 72 - 131
Target Start/End: Complemental strand, 33408212 - 33408153
Alignment:
Q  72 ttttgggatgagattcaagtctatttaacatggtattagagtcgggttaaggattgcaat 131  Q
    ||||||||||||||||||    |||||||||||||| |||||||| |||| |||||||||    
T  33408212 ttttgggatgagattcaaactcatttaacatggtatcagagtcggtttaatgattgcaat 33408153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 107
Target Start/End: Complemental strand, 12867712 - 12867663
Alignment:
Q  58 tcctttgagttagtttttgggatgagattcaagtctatttaacatggtat 107  Q
    ||||||||||||||||| |||||| ||||||||  |||||||||| ||||    
T  12867712 tcctttgagttagttttcgggatgcgattcaagattatttaacatagtat 12867663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 227 - 287
Target Start/End: Original strand, 6423984 - 6424044
Alignment:
Q  227 tgttgagtatgtaaatatgtttgagtaccctcatcttttgagcgagcttttgggatgagat 287  Q
    |||||||| | |||||||||||||||| | ||||||||| ||| || |||| |||||||||    
T  6423984 tgttgagtgtataaatatgtttgagtatcatcatcttttaagctagtttttaggatgagat 6424044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1432 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: scaffold1432
Description:

Target: scaffold1432; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 36 - 102
Target Start/End: Complemental strand, 998 - 932
Alignment:
Q  36 taaatatacttgagtatcctcatcctttgagttagtttttgggatgagattcaagtctatttaacat 102  Q
    |||||||  ||||||||||||||||||||||| || ||||||||||||||| |||||||||||||||    
T  998 taaatatgtttgagtatcctcatcctttgagtgagcttttgggatgagatttaagtctatttaacat 932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1432; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 173 - 300
Target Start/End: Complemental strand, 1063 - 936
Alignment:
Q  173 tgttgaagttatttgtagtttgttgttagtctcgtattgctcaa-attttcggaatgttgagtatgtaaatatgtttgagtaccctcatcttttgagcga 271  Q
    |||||||||| |||||||||||||||||||||| ||| |||||  ||  | ||  |||||| | | |||||||||||||||| ||||||| |||||| ||    
T  1063 tgttgaagttgtttgtagtttgttgttagtctcatatcgctcaggatcataggt-tgttgaatgtataaatatgtttgagtatcctcatcctttgagtga 965  T
Q  272 gcttttgggatgagatccaaatctattta 300  Q
    ||||||||||||||||  || ||||||||    
T  964 gcttttgggatgagatttaagtctattta 936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 36 - 101
Target Start/End: Complemental strand, 32884591 - 32884526
Alignment:
Q  36 taaatatacttgagtatcctcatcctttgagttagtttttgggatgagattcaagtctatttaaca 101  Q
    |||||||  ||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||    
T  32884591 taaatatgtttgagtatcctcatcctttaagttagtttttgggatgaaattcaagactatttaaca 32884526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 36 - 131
Target Start/End: Original strand, 30525232 - 30525327
Alignment:
Q  36 taaatatacttgagtatcctcatcctttgagttagtttttgggatgagattcaagtctatttaacatggtattagagtcgggttaaggattgcaat 131  Q
    |||||||  |||||||  ||||| ||||||| ||| |||||||||||||| ||||   |||||||||||||| ||||||| |||||||||||||||    
T  30525232 taaatatgtttgagtactctcattctttgagctagcttttgggatgagatacaagcacatttaacatggtatcagagtcgagttaaggattgcaat 30525327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 47 - 101
Target Start/End: Complemental strand, 32879747 - 32879693
Alignment:
Q  47 gagtatcctcatcctttgagttagtttttgggatgagattcaagtctatttaaca 101  Q
    ||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  32879747 gagtaccctcatcctttaagttagtttttgggatgagattcaagactatttaaca 32879693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 229 - 292
Target Start/End: Original strand, 30525435 - 30525498
Alignment:
Q  229 ttgagtatgtaaatatgtttgagtaccctcatcttttgagcgagcttttgggatgagatccaaa 292  Q
    |||||| | |||||||||||||||||| ||||||||||||| | ||||| ||||||||||||||    
T  30525435 ttgagtgtataaatatgtttgagtaccttcatcttttgagctacctttttggatgagatccaaa 30525498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 300
Target Start/End: Original strand, 12704272 - 12704333
Alignment:
Q  238 taaatatgtttgagtaccctcatcttttgagcgagcttttgggatgagatccaaatctattta 300  Q
    |||||||||||||||||| |||||||||| || ||||||| |||| ||||||||| |||||||    
T  12704272 taaatatgtttgagtaccttcatcttttgtgctagctttt-ggataagatccaaacctattta 12704333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 298
Target Start/End: Complemental strand, 28883779 - 28883660
Alignment:
Q  175 ttgaagttatttgtagtttgttgttagtctcgtattgctcaaattttcggaatgttgagtatgtaaatatgtttgagtaccctcatcttttgagcgagct 274  Q
    |||||||| |||||||||||||||||||| |     |||||  |||||||  |||| ||| | |||||||||||||||||||||||  |  |||  ||||    
T  28883779 ttgaagttgtttgtagtttgttgttagtccca----gctcaggttttcgggttgttaagtgtataaatatgtttgagtaccctcattctccgaggtagct 28883684  T
Q  275 tttgggatgagatccaaatctatt 298  Q
    |||| ||||||||||||| |||||    
T  28883683 tttgagatgagatccaaacctatt 28883660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 238 - 287
Target Start/End: Original strand, 30525232 - 30525281
Alignment:
Q  238 taaatatgtttgagtaccctcatcttttgagcgagcttttgggatgagat 287  Q
    ||||||||||||||||| |||||  ||||||| |||||||||||||||||    
T  30525232 taaatatgtttgagtactctcattctttgagctagcttttgggatgagat 30525281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 227 - 311
Target Start/End: Original strand, 50196900 - 50196984
Alignment:
Q  227 tgttgagtatgtaaatatgtttgagtaccctcatcttttgagcgagcttttgggatgagatccaaatctatttagcatgttatca 311  Q
    |||||||| | ||||||||||| | |||||||||| ||||||| | |||||||||||||||||||| ||||||| |||| |||||    
T  50196900 tgttgagtgtataaatatgtttaaataccctcatcctttgagctaacttttgggatgagatccaaacctatttaacatggtatca 50196984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 36 - 140
Target Start/End: Original strand, 20490928 - 20491033
Alignment:
Q  36 taaatatacttgagtatcctcatcctttgagttag-tttttgggatgagattcaagtctatttaacatggtattagagtcgggttaaggattgcaatgta 134  Q
    |||||||||||||||| |||| || |||||| ||| ||||||||||||||| ||||   |||||||||||||| |||| | |||||| |||| ||||||     
T  20490928 taaatatacttgagtaccctcgtcttttgagctagctttttgggatgagatccaagctcatttaacatggtatcagagccaggttaatgattacaatgtg 20491027  T
Q  135 ggaatt 140  Q
    ||||||    
T  20491028 ggaatt 20491033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 79 - 133
Target Start/End: Original strand, 22312323 - 22312377
Alignment:
Q  79 atgagattcaagtctatttaacatggtattagagtcgggttaaggattgcaatgt 133  Q
    |||||||||||  |||||||||||||||| ||||||||||||| |||||||||||    
T  22312323 atgagattcaaacctatttaacatggtatcagagtcgggttaaagattgcaatgt 22312377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 36 - 102
Target Start/End: Complemental strand, 30130846 - 30130780
Alignment:
Q  36 taaatatacttgagtatcctcatcctttgagttagtttttgggatgagattcaagtctatttaacat 102  Q
    ||||||| |||||||||| ||||| |||||| |||||||||||||||||| |||  |||||||||||    
T  30130846 taaatatgcttgagtatcttcatcatttgagctagtttttgggatgagatccaaacctatttaacat 30130780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 238 - 300
Target Start/End: Complemental strand, 30135566 - 30135504
Alignment:
Q  238 taaatatgtttgagtaccctcatcttttgagcgagcttttgggatgagatccaaatctattta 300  Q
    |||||||| ||||||||||||||| ||||||| | |||||||||||||||||||  |||||||    
T  30135566 taaatatgcttgagtaccctcatcatttgagctaacttttgggatgagatccaagcctattta 30135504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 238 - 300
Target Start/End: Complemental strand, 30141695 - 30141633
Alignment:
Q  238 taaatatgtttgagtaccctcatcttttgagcgagcttttgggatgagatccaaatctattta 300  Q
    |||||||| ||||||||||||||| ||||||| | |||||||||||||||||||  |||||||    
T  30141695 taaatatgcttgagtaccctcatcatttgagctaacttttgggatgagatccaagcctattta 30141633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 238 - 300
Target Start/End: Complemental strand, 30145117 - 30145055
Alignment:
Q  238 taaatatgtttgagtaccctcatcttttgagcgagcttttgggatgagatccaaatctattta 300  Q
    |||||||| ||||||||||||||| ||||||| | |||||||||||||||||||  |||||||    
T  30145117 taaatatgcttgagtaccctcatcatttgagctaacttttgggatgagatccaagcctattta 30145055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 227 - 300
Target Start/End: Complemental strand, 30130857 - 30130784
Alignment:
Q  227 tgttgagtatgtaaatatgtttgagtaccctcatcttttgagcgagcttttgggatgagatccaaatctattta 300  Q
    |||||||| | |||||||| ||||||| | ||||| ||||||| || ||||||||||||||||||| |||||||    
T  30130857 tgttgagtgtataaatatgcttgagtatcttcatcatttgagctagtttttgggatgagatccaaacctattta 30130784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 102
Target Start/End: Complemental strand, 30135566 - 30135500
Alignment:
Q  36 taaatatacttgagtatcctcatcctttgagttagtttttgggatgagattcaagtctatttaacat 102  Q
    ||||||| |||||||| ||||||| |||||| ||  |||||||||||||| |||| |||||||||||    
T  30135566 taaatatgcttgagtaccctcatcatttgagctaacttttgggatgagatccaagcctatttaacat 30135500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 102
Target Start/End: Complemental strand, 30141695 - 30141629
Alignment:
Q  36 taaatatacttgagtatcctcatcctttgagttagtttttgggatgagattcaagtctatttaacat 102  Q
    ||||||| |||||||| ||||||| |||||| ||  |||||||||||||| |||| |||||||||||    
T  30141695 taaatatgcttgagtaccctcatcatttgagctaacttttgggatgagatccaagcctatttaacat 30141629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 102
Target Start/End: Complemental strand, 30145117 - 30145051
Alignment:
Q  36 taaatatacttgagtatcctcatcctttgagttagtttttgggatgagattcaagtctatttaacat 102  Q
    ||||||| |||||||| ||||||| |||||| ||  |||||||||||||| |||| |||||||||||    
T  30145117 taaatatgcttgagtaccctcatcatttgagctaacttttgggatgagatccaagcctatttaacat 30145051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 227 - 291
Target Start/End: Original strand, 20490917 - 20490982
Alignment:
Q  227 tgttgagtatgtaaatatgtttgagtaccctcatcttttgagcgagc-ttttgggatgagatccaa 291  Q
    |||||||| | |||||||  |||||||||||| |||||||||| ||| ||||||||||||||||||    
T  20490917 tgttgagtgtataaatatacttgagtaccctcgtcttttgagctagctttttgggatgagatccaa 20490982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 173 - 292
Target Start/End: Original strand, 11047444 - 11047563
Alignment:
Q  173 tgttgaagttatttgtagtttgttgttagtctcgtattgctcaaattttcggaatgttgagtatgtaaatatgtttgagtaccctcatcttttgagcgag 272  Q
    |||||||||| |||||||||||||  ||||| |  ||||||||  |||  |   |||||||| | |||||| | ||||||||||||||| ||||||| |     
T  11047444 tgttgaagttgtttgtagtttgtttctagtcccacattgctcaggtttgtgcgctgttgagtgtataaatacgcttgagtaccctcatcctttgagctaa 11047543  T
Q  273 cttttgggatgagatccaaa 292  Q
    |||||  |||||||||||||    
T  11047544 cttttatgatgagatccaaa 11047563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 53 - 107
Target Start/End: Original strand, 50196928 - 50196982
Alignment:
Q  53 cctcatcctttgagttagtttttgggatgagattcaagtctatttaacatggtat 107  Q
    |||||||||||||| ||  |||||||||||||| |||  ||||||||||||||||    
T  50196928 cctcatcctttgagctaacttttgggatgagatccaaacctatttaacatggtat 50196982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 133
Target Start/End: Original strand, 50197017 - 50197058
Alignment:
Q  92 ctatttaacatggtattagagtcgggttaaggattgcaatgt 133  Q
    |||||||||||||||| | |||||| ||||||||||||||||    
T  50197017 ctatttaacatggtatcatagtcggattaaggattgcaatgt 50197058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 282
Target Start/End: Original strand, 50197098 - 50197207
Alignment:
Q  173 tgttgaagttatttgtagtttgttgttagtctcgtattgctcaaattttcggaatgttgagtatgtaaatatgtttgagtaccctcatcttttgagcgag 272  Q
    |||||||||| ||| ||||||||| || ||| |  ||||||||  ||  || | |||||||| | |||||||| | ||||||||||||| ||||| | ||    
T  50197098 tgttgaagttgtttatagtttgttatttgtcccacattgctcaggttcacgaactgttgagtgtataaatatggtcgagtaccctcatcctttgatctag 50197197  T
Q  273 cttttgggat 282  Q
    ||||||||||    
T  50197198 cttttgggat 50197207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 61 - 196
Target Start/End: Original strand, 36201946 - 36202081
Alignment:
Q  61 tttgagttagtttttgggatgagattcaagtctatttaacatggtattagagtcgggttaaggattgcaatgtaggaattatccccaagctcacgctaga 160  Q
    |||||||||| |||||||| ||||||||||  | ||||||||||||| |||||||||||||| ||| |||||| | ||||   | |||||||||| || |    
T  36201946 tttgagttagcttttgggaggagattcaagcatgtttaacatggtatcagagtcgggttaagaattacaatgtggaaattggactcaagctcacgttaaa 36202045  T
Q  161 cgtgannnnnnntgttgaagttatttgtagtttgtt 196  Q
    |||||       ||||||| || |||||||||||||    
T  36202046 cgtgagagtgaatgttgaaattgtttgtagtttgtt 36202081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 37 - 129
Target Start/End: Complemental strand, 43829875 - 43829783
Alignment:
Q  37 aaatatacttgagtatcctcatcctttgagttagtttttgggatgagattcaagtctatttaacatggtattagagtcgggttaaggattgca 129  Q
    |||||| |||||||| |||||||| ||||| ||| | ||||||||||||  |||   ||| |||||||||| |||||||||||||||||||||    
T  43829875 aaatatgcttgagtaccctcatccattgagctagctgttgggatgagatcaaagctcattaaacatggtatcagagtcgggttaaggattgca 43829783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 138
Target Start/End: Original strand, 27492218 - 27492262
Alignment:
Q  94 atttaacatggtattagagtcgggttaaggattgcaatgtaggaa 138  Q
    ||||||||||||| ||||| |||||||| ||||||||||||||||    
T  27492218 atttaacatggtactagagccgggttaatgattgcaatgtaggaa 27492262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 265
Target Start/End: Complemental strand, 36053648 - 36053556
Alignment:
Q  173 tgttgaagttatttgtagtttgttgttagtctcgtattgctcaaattttcggaatgttgagtatgtaaatatgtttgagtaccctcatctttt 265  Q
    |||||||||| ||||||||||| | |||||  |||||||||||  || | ||| |||| ||| ||||||||||||||| |||  |||||||||    
T  36053648 tgttgaagttgtttgtagtttgcttttagttccgtattgctcaggttcttggactgtttagtgtgtaaatatgtttgaatactttcatctttt 36053556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 300
Target Start/End: Complemental strand, 18203157 - 18203095
Alignment:
Q  238 taaatatgtttgagtaccctcatcttttgagcgagcttttgggatgagatccaaatctattta 300  Q
    ||||||||||| | |||||||||| ||||| | | ||||| ||||||||| ||||||||||||    
T  18203157 taaatatgtttaaataccctcatcatttgaactaacttttaggatgagattcaaatctattta 18203095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 300
Target Start/End: Complemental strand, 30841608 - 30841546
Alignment:
Q  238 taaatatgtttgagtaccctcatcttttgagcgagcttttgggatgagatccaaatctattta 300  Q
    |||||||||||||||| ||||||| ||| | | | ||| |||||||||||||||| |||||||    
T  30841608 taaatatgtttgagtatcctcatcctttaaactaacttgtgggatgagatccaaacctattta 30841546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 279
Target Start/End: Complemental strand, 43829677 - 43829620
Alignment:
Q  222 cggaatgttgagtatgtaaatatgtttgagtaccctcatcttttgagcgagcttttgg 279  Q
    |||| |||||||| | |||||||||||||||| ||||||  ||||||| |||||||||    
T  43829677 cggactgttgagtgtataaatatgtttgagtatcctcattctttgagctagcttttgg 43829620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 288
Target Start/End: Complemental strand, 43829875 - 43829826
Alignment:
Q  239 aaatatgtttgagtaccctcatcttttgagcgagcttttgggatgagatc 288  Q
    ||||||| |||||||||||||||  |||||| |||| |||||||||||||    
T  43829875 aaatatgcttgagtaccctcatccattgagctagctgttgggatgagatc 43829826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 53 - 140
Target Start/End: Complemental strand, 36496279 - 36496192
Alignment:
Q  53 cctcatcctttgagttagtttttgggatgagattcaagtctatttaacatggtattagagtcgggttaaggattgcaatgtaggaatt 140  Q
    |||||||| ||||| ||| ||||||||||||||||||| | |||| ||||||||| ||| |  | |||||||||||||||| ||||||    
T  36496279 cctcatccattgagctagcttttgggatgagattcaagcccatttcacatggtatcagacttcgattaaggattgcaatgtgggaatt 36496192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 92 - 141
Target Start/End: Original strand, 5473191 - 5473240
Alignment:
Q  92 ctatttaacatggtattagagtcgggttaaggattgcaatgtaggaatta 141  Q
    |||||||||||||||| |||||||| |||||||||| |||||||||||||    
T  5473191 ctatttaacatggtatcagagtcggattaaggattgtaatgtaggaatta 5473240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 47 - 126
Target Start/End: Complemental strand, 8745915 - 8745836
Alignment:
Q  47 gagtatcctcatcctttgagttagtttttgggatgagattcaagtctatttaacatggtattagagtcgggttaaggatt 126  Q
    ||||||||||||||||| || ||  |||||||||||||| ||||   |||||||||| ||| ||||| ||||||||||||    
T  8745915 gagtatcctcatcctttaagctaacttttgggatgagatccaagctcatttaacatgatatcagagttgggttaaggatt 8745836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 222 - 291
Target Start/End: Complemental strand, 8745942 - 8745873
Alignment:
Q  222 cggaatgttgagtatgtaaatatgtttgagtaccctcatcttttgagcgagcttttgggatgagatccaa 291  Q
    |||| |||||||| | |||||||||| ||||| ||||||| ||| ||| | |||||||||||||||||||    
T  8745942 cggactgttgagtgtataaatatgttcgagtatcctcatcctttaagctaacttttgggatgagatccaa 8745873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 36 - 97
Target Start/End: Original strand, 23972473 - 23972534
Alignment:
Q  36 taaatatacttgagtatcctcatcctttgagttagtttttgggatgagattcaagtctattt 97  Q
    |||||||  ||||||| |||||||||||||||||  |||||| |||||||||||| ||||||    
T  23972473 taaatatgtttgagtaccctcatcctttgagttaacttttggaatgagattcaagcctattt 23972534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 68 - 121
Target Start/End: Complemental strand, 31495521 - 31495468
Alignment:
Q  68 tagtttttgggatgagattcaagtctatttaacatggtattagagtcgggttaa 121  Q
    ||||||||||||||||||||||   ||||| ||||||||||||||| |||||||    
T  31495521 tagtttttgggatgagattcaaacatattttacatggtattagagttgggttaa 31495468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 72 - 123
Target Start/End: Complemental strand, 33804356 - 33804305
Alignment:
Q  72 ttttgggatgagattcaagtctatttaacatggtattagagtcgggttaagg 123  Q
    ||||||||||||||||| | |||||||||||||||| ||||| | |||||||    
T  33804356 ttttgggatgagattcatgcctatttaacatggtatcagagttgagttaagg 33804305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 133
Target Start/End: Complemental strand, 6720887 - 6720803
Alignment:
Q  48 agtatcctcatcctttgagttagtttttgggatgagattcaagtctatttaacatggtattagagtcgggttaaggattgcaatgt 133  Q
    |||| |||||||||||  | ||| |||||||||||||| |||| |||||||||||  | | |||| ||||||||| ||||||||||    
T  6720887 agtaccctcatcctttaggctagcttttgggatgagatacaaggctatttaacat-atctcagagccgggttaagaattgcaatgt 6720803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 287
Target Start/End: Original strand, 23972473 - 23972522
Alignment:
Q  238 taaatatgtttgagtaccctcatcttttgagcgagcttttgggatgagat 287  Q
    |||||||||||||||||||||||| ||||||  | ||||||| |||||||    
T  23972473 taaatatgtttgagtaccctcatcctttgagttaacttttggaatgagat 23972522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 220
Target Start/End: Complemental strand, 29155842 - 29155797
Alignment:
Q  175 ttgaagttatttgtagtttgttgttagtctcgtattgctcaaattt 220  Q
    |||| ||||||| |||||||||||||||||| ||| ||||||||||    
T  29155842 ttgatgttatttatagtttgttgttagtctcatatagctcaaattt 29155797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 292
Target Start/End: Complemental strand, 41243330 - 41243213
Alignment:
Q  175 ttgaagttatttgtagtttgttgttagtctcgtattgctcaaattttcggaatgttgagtatgtaaatatgtttgagtaccctcatcttttgagcgagct 274  Q
    |||| ||| ||||||||||||| || ||| | ||||||| |  ||||| |  ||| |||| | |||||||  ||||||| |||||||  |||||| | ||    
T  41243330 ttgacgttgtttgtagtttgttatttgtcccatattgcttaggttttcaggttgtggagtctataaatatacttgagtaacctcatccgttgagctaact 41243231  T
Q  275 tttgggatgagatccaaa 292  Q
    ||||||||||||||||||    
T  41243230 tttgggatgagatccaaa 41243213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 85
Target Start/End: Complemental strand, 41243267 - 41243218
Alignment:
Q  36 taaatatacttgagtatcctcatcctttgagttagtttttgggatgagat 85  Q
    |||||||||||||||| |||||||| ||||| ||  ||||||||||||||    
T  41243267 taaatatacttgagtaacctcatccgttgagctaacttttgggatgagat 41243218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 260 - 292
Target Start/End: Complemental strand, 35035457 - 35035425
Alignment:
Q  260 tcttttgagcgagcttttgggatgagatccaaa 292  Q
    |||||||||| ||||||||||||||||||||||    
T  35035457 tcttttgagctagcttttgggatgagatccaaa 35035425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 292
Target Start/End: Original strand, 10742262 - 10742316
Alignment:
Q  238 taaatatgtttgagtaccctcatcttttgagcgagcttttgggatgagatccaaa 292  Q
    |||||||||||| ||||||| ||| |||||   ||||||||||||||||||||||    
T  10742262 taaatatgtttgggtaccctaatcatttgatttagcttttgggatgagatccaaa 10742316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 188 - 282
Target Start/End: Original strand, 27134291 - 27134385
Alignment:
Q  188 tagtttgttgttagtctcgtattgctcaaattttcggaatgttgagtatgtaaatatgtttgagtaccctcatcttttgagcgagcttttgggat 282  Q
    ||||||||||||||||||  |||||| | ||| |||   |||||||| | ||||||||||||||||| | ||||| ||||   ||||||||||||    
T  27134291 tagtttgttgttagtctcacattgcttagattctcgagttgttgagtgtataaatatgtttgagtactcacatctattgaatcagcttttgggat 27134385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 130
Target Start/End: Original strand, 12425715 - 12425792
Alignment:
Q  53 cctcatcctttgagttagtttttgggatgagattcaagtctatttaacatggtattagagtcgggttaaggattgcaa 130  Q
    ||||||| ||| || || |||||| ||||||||||||  | |||||||||||||| ||||||| ||| || |||||||    
T  12425715 cctcatcatttaagctaatttttgtgatgagattcaatcccatttaacatggtatcagagtcgagttgagtattgcaa 12425792  T

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Target: scaffold0236 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 36 - 84
Target Start/End: Original strand, 22417 - 22465
Alignment:
Q  36 taaatatacttgagtatcctcatcctttgagttagtttttgggatgaga 84  Q
    ||||||| |||||||| | ||||||||||| |||| |||||||||||||    
T  22417 taaatatgcttgagtaccttcatcctttgaattagcttttgggatgaga 22465  T

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