View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14375_high_12 (Length: 359)

Name: NF14375_high_12
Description: NF14375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14375_high_12
NF14375_high_12
[»] chr4 (21 HSPs)
chr4 (22-337)||(19555836-19556151)
chr4 (111-324)||(22223313-22223526)
chr4 (186-317)||(21588966-21589098)
chr4 (172-326)||(18445306-18445461)
chr4 (66-131)||(16939535-16939600)
chr4 (48-148)||(21588859-21588959)
chr4 (81-131)||(22223313-22223363)
chr4 (52-131)||(18445442-18445521)
chr4 (93-131)||(3500190-3500228)
chr4 (93-131)||(9752077-9752115)
chr4 (93-131)||(15475681-15475719)
chr4 (52-102)||(16939534-16939584)
chr4 (93-131)||(17399212-17399250)
chr4 (93-131)||(17701293-17701331)
chr4 (93-131)||(22190381-22190419)
chr4 (93-131)||(25651632-25651670)
chr4 (93-131)||(27189181-27189219)
chr4 (172-276)||(17474618-17474723)
chr4 (66-102)||(3105959-3105995)
chr4 (66-102)||(16853039-16853075)
chr4 (66-102)||(55731381-55731417)
[»] chr1 (20 HSPs)
chr1 (84-327)||(12669643-12669887)
chr1 (186-326)||(19019775-19019916)
chr1 (52-131)||(12669581-12669660)
chr1 (186-282)||(22663964-22664061)
chr1 (84-178)||(19019733-19019827)
chr1 (62-102)||(25449057-25449097)
chr1 (93-131)||(10250527-10250565)
chr1 (93-131)||(21121566-21121604)
chr1 (93-131)||(21205374-21205412)
chr1 (93-131)||(21215178-21215216)
chr1 (93-131)||(23024333-23024371)
chr1 (93-131)||(37640549-37640587)
chr1 (93-131)||(42284181-42284219)
chr1 (93-131)||(44824262-44824300)
chr1 (93-131)||(46088529-46088567)
chr1 (52-88)||(18382444-18382480)
chr1 (52-120)||(19019761-19019829)
chr1 (66-102)||(21135665-21135701)
chr1 (52-88)||(46181391-46181427)
chr1 (66-102)||(48570734-48570770)
[»] chr3 (30 HSPs)
chr3 (186-324)||(10917654-10917792)
chr3 (47-182)||(10917766-10917900)
chr3 (52-150)||(11073971-11074069)
chr3 (186-317)||(20747246-20747377)
chr3 (198-324)||(10922877-10923008)
chr3 (111-326)||(11073823-11074040)
chr3 (48-148)||(10923029-10923129)
chr3 (82-162)||(27486449-27486529)
chr3 (52-115)||(11074066-11074129)
chr3 (52-113)||(8710393-8710454)
chr3 (52-113)||(9062280-9062341)
chr3 (66-131)||(21638827-21638892)
chr3 (186-324)||(16201778-16201916)
chr3 (79-145)||(20747170-20747236)
chr3 (172-282)||(4768168-4768279)
chr3 (93-132)||(30054761-30054800)
chr3 (93-131)||(2025628-2025666)
chr3 (93-131)||(2783019-2783057)
chr3 (93-131)||(2784605-2784643)
chr3 (93-131)||(5213119-5213157)
chr3 (93-131)||(9700618-9700656)
chr3 (196-277)||(14427630-14427712)
chr3 (93-131)||(40850517-40850555)
chr3 (93-131)||(46796947-46796985)
chr3 (66-132)||(46797010-46797076)
chr3 (196-263)||(17118577-17118645)
chr3 (66-102)||(21606238-21606274)
chr3 (52-140)||(36863512-36863599)
chr3 (66-102)||(49669073-49669109)
chr3 (66-102)||(50299773-50299809)
[»] chr5 (21 HSPs)
chr5 (51-326)||(24494982-24495251)
chr5 (186-325)||(22747792-22747934)
chr5 (196-326)||(24885845-24885976)
chr5 (179-266)||(26391832-26391920)
chr5 (172-282)||(13693643-13693754)
chr5 (93-131)||(4886501-4886539)
chr5 (93-131)||(4886561-4886599)
chr5 (93-131)||(23392166-23392204)
chr5 (93-131)||(26765042-26765080)
chr5 (93-131)||(28464899-28464937)
chr5 (93-131)||(30116398-30116436)
chr5 (93-131)||(35932568-35932606)
chr5 (54-102)||(4886500-4886548)
chr5 (66-102)||(10848309-10848345)
chr5 (66-102)||(11993427-11993463)
chr5 (66-102)||(29138969-29139005)
chr5 (66-102)||(30742519-30742555)
chr5 (66-102)||(33932805-33932841)
chr5 (52-88)||(36229355-36229391)
chr5 (66-102)||(42243218-42243254)
chr5 (91-131)||(42243219-42243259)
[»] chr7 (14 HSPs)
chr7 (52-182)||(22974701-22974831)
chr7 (172-282)||(22974630-22974741)
chr7 (188-324)||(19143409-19143548)
chr7 (188-324)||(20742808-20742947)
chr7 (196-326)||(20052739-20052870)
chr7 (90-131)||(27871254-27871295)
chr7 (93-131)||(15705070-15705108)
chr7 (93-131)||(32265302-32265340)
chr7 (93-131)||(33604444-33604482)
chr7 (93-131)||(48063394-48063432)
chr7 (93-131)||(48806462-48806500)
chr7 (66-102)||(12174925-12174961)
chr7 (66-102)||(14426084-14426120)
chr7 (91-131)||(14426085-14426125)
[»] chr6 (18 HSPs)
chr6 (113-326)||(19490303-19490519)
chr6 (186-324)||(19730845-19730986)
chr6 (83-208)||(19490393-19490519)
chr6 (66-132)||(22076978-22077044)
chr6 (52-161)||(10820637-10820746)
chr6 (91-131)||(22076973-22077013)
chr6 (254-324)||(34659351-34659422)
chr6 (93-131)||(9717384-9717422)
chr6 (93-131)||(13601709-13601747)
chr6 (93-131)||(16876446-16876484)
chr6 (93-131)||(33352798-33352836)
chr6 (52-88)||(7751742-7751778)
chr6 (76-116)||(10481702-10481742)
chr6 (177-276)||(10815273-10815373)
chr6 (93-129)||(19482295-19482331)
chr6 (52-88)||(27384087-27384123)
chr6 (52-88)||(27474471-27474507)
chr6 (52-88)||(27503969-27504005)
[»] chr2 (23 HSPs)
chr2 (50-148)||(19564102-19564200)
chr2 (51-145)||(22312293-22312387)
chr2 (200-326)||(27766113-27766241)
chr2 (111-324)||(17418079-17418292)
chr2 (186-326)||(19563953-19564095)
chr2 (190-267)||(21770230-21770308)
chr2 (186-324)||(8684988-8685129)
chr2 (32-166)||(17418030-17418163)
chr2 (93-131)||(6392171-6392209)
chr2 (254-331)||(17435620-17435698)
chr2 (59-132)||(21770061-21770135)
chr2 (93-131)||(22776763-22776801)
chr2 (93-131)||(22782141-22782179)
chr2 (93-131)||(22786181-22786219)
chr2 (93-131)||(28551445-28551483)
chr2 (93-131)||(30557846-30557884)
chr2 (93-131)||(31328488-31328526)
chr2 (93-131)||(31335209-31335247)
chr2 (66-159)||(21548824-21548917)
chr2 (254-326)||(21822966-21823039)
chr2 (248-324)||(26655332-26655409)
chr2 (52-88)||(22763330-22763366)
chr2 (91-131)||(28712223-28712263)
[»] chr8 (17 HSPs)
chr8 (66-131)||(18152229-18152294)
chr8 (66-131)||(14990033-14990098)
chr8 (66-131)||(14990644-14990709)
chr8 (66-131)||(22662620-22662685)
chr8 (66-131)||(22673332-22673397)
chr8 (186-324)||(23433560-23433700)
chr8 (186-324)||(18565354-18565495)
chr8 (247-322)||(13644656-13644732)
chr8 (247-322)||(13745081-13745157)
chr8 (52-116)||(28888763-28888822)
chr8 (93-131)||(6407260-6407298)
chr8 (93-131)||(16681831-16681869)
chr8 (52-102)||(21540460-21540510)
chr8 (93-131)||(40845966-40846004)
chr8 (88-132)||(18321730-18321774)
chr8 (89-148)||(18565442-18565502)
chr8 (66-102)||(33560797-33560833)
[»] scaffold0116 (2 HSPs)
scaffold0116 (66-131)||(2508-2573)
scaffold0116 (91-131)||(2503-2543)
[»] scaffold0007 (4 HSPs)
scaffold0007 (66-131)||(46208-46273)
scaffold0007 (66-131)||(63882-63947)
scaffold0007 (93-131)||(46238-46276)
scaffold0007 (93-131)||(63912-63950)
[»] scaffold0035 (2 HSPs)
scaffold0035 (52-131)||(99757-99836)
scaffold0035 (70-131)||(99745-99806)
[»] scaffold0211 (1 HSPs)
scaffold0211 (188-242)||(25194-25248)
[»] scaffold0527 (2 HSPs)
scaffold0527 (66-129)||(1071-1136)
scaffold0527 (66-129)||(9134-9199)
[»] scaffold0004 (2 HSPs)
scaffold0004 (197-267)||(382230-382302)
scaffold0004 (93-131)||(210941-210979)
[»] scaffold0908 (1 HSPs)
scaffold0908 (52-102)||(4445-4495)
[»] scaffold0488 (1 HSPs)
scaffold0488 (93-131)||(11739-11777)
[»] scaffold0247 (1 HSPs)
scaffold0247 (93-131)||(25908-25946)
[»] scaffold0217 (1 HSPs)
scaffold0217 (93-131)||(22661-22699)
[»] scaffold0176 (1 HSPs)
scaffold0176 (93-131)||(8698-8736)
[»] scaffold0045 (1 HSPs)
scaffold0045 (93-131)||(88132-88170)
[»] scaffold0016 (1 HSPs)
scaffold0016 (93-131)||(264-302)
[»] scaffold0011 (2 HSPs)
scaffold0011 (93-131)||(65937-65975)
scaffold0011 (93-131)||(144982-145020)
[»] scaffold0515 (1 HSPs)
scaffold0515 (91-128)||(5727-5764)
[»] scaffold0306 (1 HSPs)
scaffold0306 (91-128)||(5737-5774)
[»] scaffold0084 (1 HSPs)
scaffold0084 (197-242)||(30606-30651)
[»] scaffold1359 (2 HSPs)
scaffold1359 (91-131)||(1184-1224)
scaffold1359 (66-102)||(1189-1225)
[»] scaffold0352 (2 HSPs)
scaffold0352 (91-131)||(1350-1390)
scaffold0352 (66-102)||(1355-1391)
[»] scaffold0349 (1 HSPs)
scaffold0349 (52-88)||(14028-14064)


Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 22 - 337
Target Start/End: Original strand, 19555836 - 19556151
Alignment:
Q  22 ttgagcatagaagtctcttacaagagccctttgagcattggaaatctcttgcatgtgtgcttgagcaataaaagtctcttggagttgtccttgagcaata 121  Q
    ||||| ||||||||||||||  | ||||||||||||||||||||| |||||| || ||||||||| |||| ||||||||||||||||| |||||||||||    
T  19555836 ttgagtatagaagtctcttaggacagccctttgagcattggaaatatcttgcctgcgtgcttgaggaatagaagtctcttggagttgtacttgagcaata 19555935  T
Q  122 gaagtctcttagtggtgaccttgagcattgtaagtctcttgaaagaatcgttgagcattgaaattctcttgcaagtgtgcttgagcattgagaagtctat 221  Q
    |||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| ||| ||||||||||||||    
T  19555936 gaagtctcttggtagtgaccttgagcattgtaagtctcttgaaagagtcgttgagcattggaattctcttgcaagtgtgctggagaattgagaagtctat 19556035  T
Q  222 tggaatagtccttaagcaattgtaatatgtgagattatagtgaaattcattggaagtgcaactagactagactactttgtgttgtgggaggaaccagtat 321  Q
    |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||  |||| |||||||||||||||||||||||||||||||    
T  19556036 tggaatagtctttaagcaattgtaatatatgagattatagtgaaattcattggaagtgcaacgggactggactactttgtgttgtgggaggaaccagtat 19556135  T
Q  322 aaattatttttgtctg 337  Q
    ||||| ||| ||||||    
T  19556136 aaattgtttgtgtctg 19556151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 111 - 324
Target Start/End: Original strand, 22223313 - 22223526
Alignment:
Q  111 cttgagcaatagaagtctcttagtggtgaccttgagcattgtaagtctcttgaaagaatcgttgagcattgaaattctcttgcaagtgtgcttgagcatt 210  Q
    ||||||||||||||||||||| | | || ||||||||| || ||||||||||  || | | ||||| |  ||| | |||||||||| |||||||||||||    
T  22223313 cttgagcaatagaagtctcttggagttgtccttgagcagtggaagtctcttgttagtaacattgagaaaagaagt-ctcttgcaagggtgcttgagcatt 22223411  T
Q  211 gagaagtctattggaatagtccttaagcaattgtaatatgtgagattatagtgaaattcattggaagtgcaactagactagactact-ttgtgttgtggg 309  Q
    | |||||||  ||||| ||||||| |||||||||||||||||||||||||||||||| | ||||||||||||   |||| |||||||  |||||||||||    
T  22223412 gggaagtctcgtggaagagtccttcagcaattgtaatatgtgagattatagtgaaatcccttggaagtgcaagaggacttgactactcctgtgttgtggg 22223511  T
Q  310 aggaaccagtataaa 324  Q
    |||||||||||||||    
T  22223512 aggaaccagtataaa 22223526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 186 - 317
Target Start/End: Original strand, 21588966 - 21589098
Alignment:
Q  186 tctcttgcaagtgtgcttgagcattgagaagtctattggaatagtccttaagcaattgtaatatgtgagattatagtgaaattcattggaagtgcaacta 285  Q
    |||||||||||||||||||||||||||||||||| ||| || |||| || |  ||||||||||||||||||||||||||||| | ||||||||||||  |    
T  21588966 tctcttgcaagtgtgcttgagcattgagaagtctcttgaaagagtcattgataaattgtaatatgtgagattatagtgaaatcctttggaagtgcaaaga 21589065  T
Q  286 gactagactact-ttgtgttgtgggaggaacca 317  Q
    |||| |||||||  |||||| ||||||||||||    
T  21589066 gactggactactcctgtgttttgggaggaacca 21589098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 172 - 326
Target Start/End: Complemental strand, 18445461 - 18445306
Alignment:
Q  172 ttgagcattgaaattctcttgcaagtgtgcttgagcattgagaagtctattggaatagtccttaagcaattgtaatatgtgagattatagtgaaattcat 271  Q
    ||||||| || || |||||||||||||||||||||||||  ||||||| |||||| ||||||| |||||||||||| |||||||||||||  |||| | |    
T  18445461 ttgagcagtggaagtctcttgcaagtgtgcttgagcatttggaagtctcttggaagagtccttgagcaattgtaatctgtgagattataggaaaatccct 18445362  T
Q  272 tggaagtgcaactagactagactact-ttgtgttgtgggaggaaccagtataaatt 326  Q
    |||||||||||   |||| |||||||  |||||| |||||||||| | ||||||||    
T  18445361 tggaagtgcaagaggactggactactcatgtgttctgggaggaactaatataaatt 18445306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 66 - 131
Target Start/End: Complemental strand, 16939600 - 16939535
Alignment:
Q  66 tctcttgcatgtgtgcttgagcaataaaagtctcttggagttgtccttgagcaatagaagtctctt 131  Q
    |||||||||| ||||||||||||||| |||||||||| | |||| |||||||||||||||||||||    
T  16939600 tctcttgcatttgtgcttgagcaatagaagtctcttgcatttgtgcttgagcaatagaagtctctt 16939535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 48 - 148
Target Start/End: Original strand, 21588859 - 21588959
Alignment:
Q  48 ccctttgagcattggaaatctcttgcatgtgtgcttgagcaataaaagtctcttggagttgtccttgagcaatagaagtctcttagtggtgaccttgagc 147  Q
    ||||||||||||||||||||||||| | |||| |||||| |    ||| ||||||||||| |||||||| ||| |||||||||| |  ||||||||||||    
T  21588859 ccctttgagcattggaaatctcttggaagtgtccttgagtagaggaaggctcttggagttatccttgagtaatggaagtctcttgggagtgaccttgagc 21588958  T
Q  148 a 148  Q
    |    
T  21588959 a 21588959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 81 - 131
Target Start/End: Original strand, 22223313 - 22223363
Alignment:
Q  81 cttgagcaataaaagtctcttggagttgtccttgagcaatagaagtctctt 131  Q
    ||||||||||| |||||||||||||||||||||||||| | ||||||||||    
T  22223313 cttgagcaatagaagtctcttggagttgtccttgagcagtggaagtctctt 22223363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 52 - 131
Target Start/End: Complemental strand, 18445521 - 18445442
Alignment:
Q  52 ttgagcattggaaatctcttgcatgtgtgcttgagcaataaaagtctcttggagttgtccttgagcaatagaagtctctt 131  Q
    |||||||||||||  ||||||| ||||||||| || | |  |||| ||||||||||||||||||||| | ||||||||||    
T  18445521 ttgagcattggaagcctcttgcctgtgtgcttaagaatttgaagtttcttggagttgtccttgagcagtggaagtctctt 18445442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 131
Target Start/End: Original strand, 3500190 - 3500228
Alignment:
Q  93 aagtctcttggagttgtccttgagcaatagaagtctctt 131  Q
    |||||||||| |||||| |||||||||||||||||||||    
T  3500190 aagtctcttgcagttgtgcttgagcaatagaagtctctt 3500228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 131
Target Start/End: Original strand, 9752077 - 9752115
Alignment:
Q  93 aagtctcttggagttgtccttgagcaatagaagtctctt 131  Q
    |||||||||| |||||| |||||||||||||||||||||    
T  9752077 aagtctcttgcagttgtgcttgagcaatagaagtctctt 9752115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 131
Target Start/End: Original strand, 15475681 - 15475719
Alignment:
Q  93 aagtctcttggagttgtccttgagcaatagaagtctctt 131  Q
    |||||||||| |||||| |||||||||||||||||||||    
T  15475681 aagtctcttgcagttgtgcttgagcaatagaagtctctt 15475719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 102
Target Start/End: Complemental strand, 16939584 - 16939534
Alignment:
Q  52 ttgagcattggaaatctcttgcatgtgtgcttgagcaataaaagtctcttg 102  Q
    ||||||| | ||| |||||||||| ||||||||||||||| ||||||||||    
T  16939584 ttgagcaatagaagtctcttgcatttgtgcttgagcaatagaagtctcttg 16939534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 131
Target Start/End: Original strand, 17399212 - 17399250
Alignment:
Q  93 aagtctcttggagttgtccttgagcaatagaagtctctt 131  Q
    |||||||||| |||||| |||||||||||||||||||||    
T  17399212 aagtctcttgtagttgtgcttgagcaatagaagtctctt 17399250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 131
Target Start/End: Original strand, 17701293 - 17701331
Alignment:
Q  93 aagtctcttggagttgtccttgagcaatagaagtctctt 131  Q
    |||||||||| |||||| |||||||||||||||||||||    
T  17701293 aagtctcttgcagttgtgcttgagcaatagaagtctctt 17701331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 131
Target Start/End: Complemental strand, 22190419 - 22190381
Alignment:
Q  93 aagtctcttggagttgtccttgagcaatagaagtctctt 131  Q
    |||||||||| |||||| |||||||||||||||||||||    
T  22190419 aagtctcttgcagttgtgcttgagcaatagaagtctctt 22190381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 131
Target Start/End: Original strand, 25651632 - 25651670
Alignment:
Q  93 aagtctcttggagttgtccttgagcaatagaagtctctt 131  Q
    |||||||||| |||||| |||||||||||||||||||||    
T  25651632 aagtctcttgcagttgtgcttgagcaatagaagtctctt 25651670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 131
Target Start/End: Original strand, 27189181 - 27189219
Alignment:
Q  93 aagtctcttggagttgtccttgagcaatagaagtctctt 131  Q
    |||||||||| |||||| |||||||||||||||||||||    
T  27189181 aagtctcttgcagttgtgcttgagcaatagaagtctctt 27189219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 276
Target Start/End: Original strand, 17474618 - 17474723
Alignment:
Q  172 ttgagcattgaaattctcttgcaagtgtgcttgagcattgagaagtctattggaatagtccttaagcaattgtaata-tgtgagattatagtgaaattca 270  Q
    |||| ||||| || ||||||||  |||| |||||| ||| |||||||| |||  |  |||||| ||||||||||||| |||| |||||||||||||| |     
T  17474618 ttgatcattggaagtctcttgcttgtgtacttgagtatttagaagtctcttgagagtgtccttgagcaattgtaatattgtgtgattatagtgaaatcct 17474717  T
Q  271 ttggaa 276  Q
    ||||||    
T  17474718 ttggaa 17474723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 102
Target Start/End: Original strand, 3105959 - 3105995
Alignment:
Q  66 tctcttgcatgtgtgcttgagcaataaaagtctcttg 102  Q
    |||||||||| ||||||||||||||| ||||||||||    
T  3105959 tctcttgcatttgtgcttgagcaatagaagtctcttg 3105995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 102
Target Start/End: Complemental strand, 16853075 - 16853039
Alignment:
Q  66 tctcttgcatgtgtgcttgagcaataaaagtctcttg 102  Q
    |||||||||| ||||||||||||||| ||||||||||    
T  16853075 tctcttgcatttgtgcttgagcaatagaagtctcttg 16853039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 102
Target Start/End: Complemental strand, 55731417 - 55731381
Alignment:
Q  66 tctcttgcatgtgtgcttgagcaataaaagtctcttg 102  Q
    |||||||||| ||||||||||||||| ||||||||||    
T  55731417 tctcttgcatttgtgcttgagcaatagaagtctcttg 55731381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 73; Significance: 3e-33; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 84 - 327
Target Start/End: Original strand, 12669643 - 12669887
Alignment:
Q  84 gagcaataaaagtctcttggagttgtccttgagcaatagaagtctcttagtggtgaccttgagcattgtaagtctcttgaaagaatcgttgagcattgaa 183  Q
    |||||||||||||||||||||||||||||||| ||  |||||||| ||   | ||  ||| || | || ||||||||||  ||   | ||||| |||  |    
T  12669643 gagcaataaaagtctcttggagttgtccttgatcatgagaagtctattgcagttgtgctttagtagtggaagtctcttggtagtgaccttgagtattaga 12669742  T
Q  184 attctcttgcaagtgtgcttgagcattgagaagtctattggaatagtccttaagcaattgtaatatgtgagattatagtgaaattcattggaagtgcaac 283  Q
    | |||||||||||||||||||||||||  ||||||| ||| || ||||||| | ||||| ||||   ||| ||||||||||||||| ||||||||||||     
T  12669743 agtctcttgcaagtgtgcttgagcatttggaagtcttttgaaagagtccttgaacaattttaatcaatgaaattatagtgaaattccttggaagtgcaag 12669842  T
Q  284 tagactagactact-ttgtgttgtgggaggaaccagtataaatta 327  Q
      |||| ||||||| ||||||||||||||||||||||||||||||    
T  12669843 gggactggactactattgtgttgtgggaggaaccagtataaatta 12669887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 186 - 326
Target Start/End: Original strand, 19019775 - 19019916
Alignment:
Q  186 tctcttgcaagtgtgcttgagcattgagaagtctattggaatagtccttaagcaattgtaatat-gtgagattatagtgaaattcattggaagtgcaact 284  Q
    ||||||||||||||||||||||| || ||||||| |||||| ||||||| |||||| ||||| | |||||||||||||||||||| ||  ||||||||      
T  19019775 tctcttgcaagtgtgcttgagcagtg-gaagtctcttggaagagtccttgagcaatggtaatctagtgagattatagtgaaattccttaaaagtgcaagg 19019873  T
Q  285 agactagactactt-tgtgttgtgggaggaaccagtataaatt 326  Q
     |||| |||||||  ||| ||||||||||||||||||||||||    
T  19019874 ggactggactactcatgtattgtgggaggaaccagtataaatt 19019916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 52 - 131
Target Start/End: Original strand, 12669581 - 12669660
Alignment:
Q  52 ttgagcattggaaatctcttgcatgtgtgcttgagcaataaaagtctcttggagttgtccttgagcaatagaagtctctt 131  Q
    |||||||||| || || ||||| ||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||    
T  12669581 ttgagcattgaaagtcgcttgcctgtgtgcttgagcaatagaagtctcttggagttgtcctcgagcaataaaagtctctt 12669660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 186 - 282
Target Start/End: Complemental strand, 22664061 - 22663964
Alignment:
Q  186 tctcttgcaagtgtgcttgagcattgagaagtctattggaatagtccttaagcaattgtaatat-gtgagattatagtgaaattcattggaagtgcaa 282  Q
    |||||||||||||||||||||||||  ||||||| || ||| ||||||| ||| ||| |||| | |||||||||||| ||||| | || |||||||||    
T  22664061 tctcttgcaagtgtgcttgagcatttggaagtctcttagaagagtccttgagctattataatctagtgagattatagcgaaatcccttagaagtgcaa 22663964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 84 - 178
Target Start/End: Original strand, 19019733 - 19019827
Alignment:
Q  84 gagcaataaaagtctcttggagttgtccttgagcaatagaagtctcttagtggtgaccttgagcattgtaagtctcttgaaagaatcgttgagca 178  Q
    ||||| || ||||||||||||||||||||||||||  |||||||||||    |||  |||||||| || |||||||||| |||| || |||||||    
T  19019733 gagcattagaagtctcttggagttgtccttgagcatcagaagtctcttgcaagtgtgcttgagcagtggaagtctcttggaagagtccttgagca 19019827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 102
Target Start/End: Original strand, 25449057 - 25449097
Alignment:
Q  62 gaaatctcttgcatgtgtgcttgagcaataaaagtctcttg 102  Q
    |||||||||||||| ||||||||||||||| ||||||||||    
T  25449057 gaaatctcttgcatttgtgcttgagcaatagaagtctcttg 25449097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 131
Target Start/End: Complemental strand, 10250565 - 10250527
Alignment:
Q  93 aagtctcttggagttgtccttgagcaatagaagtctctt 131  Q
    |||||||||| |||||| |||||||||||||||||||||    
T  10250565 aagtctcttgcagttgtgcttgagcaatagaagtctctt 10250527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 131
Target Start/End: Original strand, 21121566 - 21121604
Alignment:
Q  93 aagtctcttggagttgtccttgagcaatagaagtctctt 131  Q
    |||||||||| |||||| |||||||||||||||||||||    
T  21121566 aagtctcttgcagttgtgcttgagcaatagaagtctctt 21121604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 131
Target Start/End: Original strand, 21205374 - 21205412
Alignment:
Q  93 aagtctcttggagttgtccttgagcaatagaagtctctt 131  Q
    |||||||||| |||||| |||||||||||||||||||||    
T  21205374 aagtctcttgcagttgtgcttgagcaatagaagtctctt 21205412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 131
Target Start/End: Original strand, 21215178 - 21215216
Alignment:
Q  93 aagtctcttggagttgtccttgagcaatagaagtctctt 131  Q
    |||||||||| |||||| |||||||||||||||||||||    
T  21215178 aagtctcttgcagttgtgcttgagcaatagaagtctctt 21215216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 131
Target Start/End: Complemental strand, 23024371 - 23024333
Alignment:
Q  93 aagtctcttggagttgtccttgagcaatagaagtctctt 131  Q
    |||||||||| |||||| |||||||||||||||||||||    
T  23024371 aagtctcttgcagttgtgcttgagcaatagaagtctctt 23024333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 131
Target Start/End: Complemental strand, 37640587 - 37640549
Alignment:
Q  93 aagtctcttggagttgtccttgagcaatagaagtctctt 131  Q
    |||||||||| |||||| |||||||||||||||||||||    
T  37640587 aagtctcttgcagttgtgcttgagcaatagaagtctctt 37640549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 131
Target Start/End: Complemental strand, 42284219 - 42284181
Alignment:
Q  93 aagtctcttggagttgtccttgagcaatagaagtctctt 131  Q
    |||||||||| |||||| |||||||||||||||||||||    
T  42284219 aagtctcttgcagttgtgcttgagcaatagaagtctctt 42284181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 131
Target Start/End: Original strand, 44824262 - 44824300
Alignment:
Q  93 aagtctcttggagttgtccttgagcaatagaagtctctt 131  Q
    |||||||||| |||||| |||||||||||||||||||||    
T  44824262 aagtctcttgcagttgtgcttgagcaatagaagtctctt 44824300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 131
Target Start/End: Complemental strand, 46088567 - 46088529
Alignment:
Q  93 aagtctcttggagttgtccttgagcaatagaagtctctt 131  Q
    |||||||||| |||||| |||||||||||||||||||||    
T  46088567 aagtctcttgcagttgtgcttgagcaatagaagtctctt 46088529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 88
Target Start/End: Original strand, 18382444 - 18382480
Alignment:
Q  52 ttgagcattggaaatctcttgcatgtgtgcttgagca 88  Q
    |||||||||||||  ||||||||||||||||||||||    
T  18382444 ttgagcattggaagactcttgcatgtgtgcttgagca 18382480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 120
Target Start/End: Original strand, 19019761 - 19019829
Alignment:
Q  52 ttgagcattggaaatctcttgcatgtgtgcttgagcaataaaagtctcttggagttgtccttgagcaat 120  Q
    ||||||||  ||| ||||||||| ||||||||||||| |  ||||||||||||   |||||||||||||    
T  19019761 ttgagcatcagaagtctcttgcaagtgtgcttgagcagtggaagtctcttggaagagtccttgagcaat 19019829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 102
Target Start/End: Original strand, 21135665 - 21135701
Alignment:
Q  66 tctcttgcatgtgtgcttgagcaataaaagtctcttg 102  Q
    |||||||||  ||||||||||||||||||||||||||    
T  21135665 tctcttgcagttgtgcttgagcaataaaagtctcttg 21135701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 88
Target Start/End: Original strand, 46181391 - 46181427
Alignment:
Q  52 ttgagcattggaaatctcttgcatgtgtgcttgagca 88  Q
    ||||||||||||| ||||||||||| |||||||||||    
T  46181391 ttgagcattggaagtctcttgcatgcgtgcttgagca 46181427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 102
Target Start/End: Original strand, 48570734 - 48570770
Alignment:
Q  66 tctcttgcatgtgtgcttgagcaataaaagtctcttg 102  Q
    |||||||||  ||||||||||||||||||||||||||    
T  48570734 tctcttgcagttgtgcttgagcaataaaagtctcttg 48570770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 6e-28; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 186 - 324
Target Start/End: Complemental strand, 10917792 - 10917654
Alignment:
Q  186 tctcttgcaagtgtgcttgagcattgagaagtctattggaatagtccttaagcaattgtaatatgtgagattatagtgaaattcattggaagtgcaacta 285  Q
    |||||||||||  ||||||||||||||||||| | |||||| ||||||||||| ||||||||||||||||||||| |||||| | ||||||| ||||       
T  10917792 tctcttgcaagaatgcttgagcattgagaagtttcttggaagagtccttaagccattgtaatatgtgagattataatgaaatcccttggaagagcaa-gg 10917694  T
Q  286 gactagactact-ttgtgttgtgggaggaaccagtataaa 324  Q
    |||| |||||||  ||||||||||||||||| ||||||||    
T  10917693 gactggactactcctgtgttgtgggaggaactagtataaa 10917654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 47 - 182
Target Start/End: Complemental strand, 10917900 - 10917766
Alignment:
Q  47 gccctttgagcattggaaatctcttgcatgtgtgcttgagcaataaaagtctcttggagttgtccttgagcaatagaagtctcttagtggtgaccttgag 146  Q
    |||||||||| ||||||| | |||||| ||||||||||||||||| ||||||| ||||||| || |||||||||  ||||||||| || |||||||||||    
T  10917900 gccctttgagaattggaagtttcttgcttgtgtgcttgagcaatagaagtctcctggagttttctttgagcaatgaaagtctcttggtagtgaccttgag 10917801  T
Q  147 cattgtaagtctcttgaaagaatcgttgagcattga 182  Q
    ||  | |||||||||| ||||||  |||||||||||    
T  10917800 caaag-aagtctcttgcaagaatgcttgagcattga 10917766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 52 - 150
Target Start/End: Complemental strand, 11074069 - 11073971
Alignment:
Q  52 ttgagcattggaaatctcttgcatgtgtgcttgagcaataaaagtctcttggagttgtccttgagcaatagaagtctcttagtggtgaccttgagcatt 150  Q
    |||| ||||| || |||||||| || |||||||||||||| |||||||||||||||||||||||||| | |||||||||| || || ||||| ||||||    
T  11074069 ttgatcattgtaagtctcttgcctgcgtgcttgagcaatagaagtctcttggagttgtccttgagcagtggaagtctcttggtagttaccttaagcatt 11073971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 186 - 317
Target Start/End: Original strand, 20747246 - 20747377
Alignment:
Q  186 tctcttgcaagtgtgcttgagcattgagaagtctattggaatagtccttaagcaattgtaatatgtgagattatagtgaaattcattggaagtgcaacta 285  Q
    ||||||| |||||||||||||||||||||||||| || ||| ||||||| |||| ||||||| | | || |||||||||||| | ||| ||||||||       
T  20747246 tctcttgtaagtgtgcttgagcattgagaagtctcttagaagagtccttgagcatttgtaatgt-ttaggttatagtgaaatcccttgaaagtgcaaggg 20747344  T
Q  286 gactagactac-tttgtgttgtgggaggaacca 317  Q
    |||| |||||| |||||||| ||||||||||||    
T  20747345 gactggactacttttgtgttatgggaggaacca 20747377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 198 - 324
Target Start/End: Complemental strand, 10923008 - 10922877
Alignment:
Q  198 gtgcttgagcattgagaagtctattggaatagtccttaagcaattgtaatatgtgagattatagtgaaattcattggaagtgcaactagactagactact 297  Q
    |||||||||||||||||||| | |||||| ||| ||| |||||||||||| |||||||||||| |||||| | ||| ||||||||  ||||| |||||||    
T  10923008 gtgcttgagcattgagaagtttcttggaagagtacttgagcaattgtaatctgtgagattataatgaaatcccttgaaagtgcaa-gagactggactact 10922910  T
Q  298 ------ttgtgttgtgggaggaaccagtataaa 324  Q
          ||||| |||||||||||| ||||||||    
T  10922909 cctatgttgtggtgtgggaggaactagtataaa 10922877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 111 - 326
Target Start/End: Complemental strand, 11074040 - 11073823
Alignment:
Q  111 cttgagcaatagaagtctcttagtggtgaccttgagcattgtaagtctcttgaaagaatcgttgagcattgaaattctcttgcaagtgtgcttgagcatt 210  Q
    ||||||||||||||||||||| | | || ||||||||| || ||||||||||  ||   | || ||||||  || |||||| ||| | | || |||||||    
T  11074040 cttgagcaatagaagtctcttggagttgtccttgagcagtggaagtctcttggtagttaccttaagcattagaaatctcttccaaattttctagagcatt 11073941  T
Q  211 gagaagtctattggaatagtccttaagcaattgtaatat-gtgagattatagtgaaattcattggaagtgcaactagactagactact-ttgtgttgtgg 308  Q
       |||||| |||||| | |||||||||||||||||||| ||||||||||||||||||   || |||||||||   |||| |||||||  || ||||| |    
T  11073940 tgaaagtctcttggaagattccttaagcaattgtaatatagtgagattatagtgaaatctcttagaagtgcaaggggactggactactcctgcgttgttg 11073841  T
Q  309 gaggaaccagtataaatt 326  Q
    ||||||||| ||||||||    
T  11073840 gaggaaccaatataaatt 11073823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 48 - 148
Target Start/End: Complemental strand, 10923129 - 10923029
Alignment:
Q  48 ccctttgagcattggaaatctcttgcatgtgtgcttgagcaataaaagtctcttggagttgtccttgagcaatagaagtctcttagtggtgaccttgagc 147  Q
    |||||||||  |||||| |||||| | ||  ||||||| ||||| |||||||||||||||||||||||||| |  || ||||||||| ||||||||||||    
T  10923129 ccctttgagagttggaagtctcttacttgcatgcttgaacaatagaagtctcttggagttgtccttgagcagtgaaattctcttagtagtgaccttgagc 10923030  T
Q  148 a 148  Q
    |    
T  10923029 a 10923029  T

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Target: chr3; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 82 - 162
Target Start/End: Original strand, 27486449 - 27486529
Alignment:
Q  82 ttgagcaataaaagtctcttggagttgtccttgagcaatagaagtctcttagtggtgaccttgagcattgtaagtctcttg 162  Q
    |||||||||| |||||||||||| ||||||| ||||| |  ||||||||| || ||||||||||||||| |||||||||||    
T  27486449 ttgagcaatagaagtctcttggaattgtcctcgagcagtgtaagtctcttcgtagtgaccttgagcattataagtctcttg 27486529  T

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Target: chr3; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 52 - 115
Target Start/End: Complemental strand, 11074129 - 11074066
Alignment:
Q  52 ttgagcattggaaatctcttgcatgtgtgcttgagcaataaaagtctcttggagttgtccttga 115  Q
    ||||||||||||  |||||||| ||||||||||||||||| ||||||||||||||| |||||||    
T  11074129 ttgagcattggatgtctcttgcctgtgtgcttgagcaatataagtctcttggagttatccttga 11074066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 52 - 113
Target Start/End: Complemental strand, 8710454 - 8710393
Alignment:
Q  52 ttgagcattggaaatctcttgcatgtgtgcttgagcaataaaagtctcttggagttgtcctt 113  Q
    ||||||||||||| |||||||| ||||||||||||||||| |||||||||| |||| |||||    
T  8710454 ttgagcattggaagtctcttgcctgtgtgcttgagcaatagaagtctcttgaagttatcctt 8710393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 52 - 113
Target Start/End: Complemental strand, 9062341 - 9062280
Alignment:
Q  52 ttgagcattggaaatctcttgcatgtgtgcttgagcaataaaagtctcttggagttgtcctt 113  Q
    ||||||||||||| |||||||| ||||||||||||||||| |||||||||| |||| |||||    
T  9062341 ttgagcattggaagtctcttgcctgtgtgcttgagcaatagaagtctcttgaagttatcctt 9062280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 66 - 131
Target Start/End: Original strand, 21638827 - 21638892
Alignment:
Q  66 tctcttgcatgtgtgcttgagcaataaaagtctcttggagttgtccttgagcaatagaagtctctt 131  Q
    |||||||||| |||| |||||||||| ||| |||||| |||||| |||||||||||||||||||||    
T  21638827 tctcttgcatttgtgtttgagcaatagaaggctcttgcagttgtgcttgagcaatagaagtctctt 21638892  T

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Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 186 - 324
Target Start/End: Original strand, 16201778 - 16201916
Alignment:
Q  186 tctcttgcaagtgtgcttgagcattgagaagtctattggaatagtccttaagcaattgtaatatgtgagattatagtgaaattcattggaagtgcaacta 285  Q
    ||||||||||||||| ||||| |||||||||||| |||||| ||||||| | ||  |||||| | |||  |||||||||||| | ||||||||||||       
T  16201778 tctcttgcaagtgtg-ttgagaattgagaagtctcttggaagagtccttgaacatctgtaatttatgaatttatagtgaaatcccttggaagtgcaaggg 16201876  T
Q  286 gactagactact-ttgtgttgtgggaggaaccagtataaa 324  Q
    |||| || ||||  |||||||| ||| |||||||||||||    
T  16201877 gactggattactcctgtgttgtaggatgaaccagtataaa 16201916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 79 - 145
Target Start/End: Original strand, 20747170 - 20747236
Alignment:
Q  79 tgcttgagcaataaaagtctcttggagttgtccttgagcaatagaagtctcttagtggtgaccttga 145  Q
    |||||||||||   |||||| ||||||||||||||||||| |||||||||||| || ||||||||||    
T  20747170 tgcttgagcaaaggaagtcttttggagttgtccttgagcattagaagtctcttggtagtgaccttga 20747236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 172 - 282
Target Start/End: Original strand, 4768168 - 4768279
Alignment:
Q  172 ttgagcattgaaattctcttgcaagtgtgcttgagcattgagaagtctattggaatagtccttaagcaattgtaatat-gtgagattatagtgaaattca 270  Q
    |||||||||| || |||||   ||||||| |||||||||   |||||| ||| || ||||||| |||| ||||||| | ||||||||||||||||||       
T  4768168 ttgagcattggaaatctctcaaaagtgtgtttgagcatttgaaagtctcttgaaagagtccttgagcatttgtaatctagtgagattatagtgaaatctc 4768267  T
Q  271 ttggaagtgcaa 282  Q
    ||||||||||||    
T  4768268 ttggaagtgcaa 4768279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 93 - 132
Target Start/End: Original strand, 30054761 - 30054800
Alignment:
Q  93 aagtctcttggagttgtccttgagcaatagaagtctctta 132  Q
    |||||||||| |||||| ||||||||||||||||||||||    
T  30054761 aagtctcttgcagttgtgcttgagcaatagaagtctctta 30054800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 131
Target Start/End: Complemental strand, 2025666 - 2025628
Alignment:
Q  93 aagtctcttggagttgtccttgagcaatagaagtctctt 131  Q
    |||||||||| |||||| |||||||||||||||||||||    
T  2025666 aagtctcttgcagttgtgcttgagcaatagaagtctctt 2025628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 131
Target Start/End: Complemental strand, 2783057 - 2783019
Alignment:
Q  93 aagtctcttggagttgtccttgagcaatagaagtctctt 131  Q
    |||||||||| |||||| |||||||||||||||||||||    
T  2783057 aagtctcttgcagttgtgcttgagcaatagaagtctctt 2783019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 131
Target Start/End: Complemental strand, 2784643 - 2784605
Alignment:
Q  93 aagtctcttggagttgtccttgagcaatagaagtctctt 131  Q
    |||||||||| |||||| |||||||||||||||||||||    
T  2784643 aagtctcttgcagttgtgcttgagcaatagaagtctctt 2784605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 131
Target Start/End: Complemental strand, 5213157 - 5213119
Alignment:
Q  93 aagtctcttggagttgtccttgagcaatagaagtctctt 131  Q
    |||||||||| |||||| |||||||||||||||||||||    
T  5213157 aagtctcttgcagttgtgcttgagcaatagaagtctctt 5213119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 131
Target Start/End: Original strand, 9700618 - 9700656
Alignment:
Q  93 aagtctcttggagttgtccttgagcaatagaagtctctt 131  Q
    |||||||||| |||||| |||||||||||||||||||||    
T  9700618 aagtctcttgcagttgtgcttgagcaatagaagtctctt 9700656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 277
Target Start/End: Original strand, 14427630 - 14427712
Alignment:
Q  196 gtgtgcttgagcattgagaagtctattggaatagtccttaagcaattgtaata-tgtgagattatagtgaaattcattggaag 277  Q
    |||||||||||||||  ||||||| ||||||  |||||| ||||||||||||| |||  |||| ||||||||| | |||||||    
T  14427630 gtgtgcttgagcatttcgaagtctcttggaagtgtccttgagcaattgtaatattgtatgattctagtgaaatcccttggaag 14427712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 131
Target Start/End: Complemental strand, 40850555 - 40850517
Alignment:
Q  93 aagtctcttggagttgtccttgagcaatagaagtctctt 131  Q
    |||||||||| |||||| |||||||||||||||||||||    
T  40850555 aagtctcttgcagttgtacttgagcaatagaagtctctt 40850517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 131
Target Start/End: Original strand, 46796947 - 46796985
Alignment:
Q  93 aagtctcttggagttgtccttgagcaatagaagtctctt 131  Q
    |||||||||| |||||| |||||||||||||||||||||    
T  46796947 aagtctcttgcagttgtgcttgagcaatagaagtctctt 46796985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 132
Target Start/End: Original strand, 46797010 - 46797076
Alignment:
Q  66 tctcttgcatgtgtgcttgagcaataaaagtctcttggagttgtccttgagcaatagaagtctctta 132  Q
    |||||||||  |||||||||||| |  |||||||||| |||||| |||||||| | |||||||||||    
T  46797010 tctcttgcagttgtgcttgagcatttgaagtctcttgcagttgtgcttgagcatttgaagtctctta 46797076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 196 - 263
Target Start/End: Complemental strand, 17118645 - 17118577
Alignment:
Q  196 gtgtgcttgagcattgagaagtctattggaatagtccttaagcaattgtaatat-gtgagattatagtg 263  Q
    |||||||||||||||  ||||||| ||| ||  |||||| |||||||||||| | ||||||||||||||    
T  17118645 gtgtgcttgagcatttggaagtctcttgaaaatgtccttgagcaattgtaatctagtgagattatagtg 17118577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 102
Target Start/End: Original strand, 21606238 - 21606274
Alignment:
Q  66 tctcttgcatgtgtgcttgagcaataaaagtctcttg 102  Q
    |||||||||| ||||||||||||||| ||||||||||    
T  21606238 tctcttgcatttgtgcttgagcaatagaagtctcttg 21606274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 140
Target Start/End: Complemental strand, 36863599 - 36863512
Alignment:
Q  52 ttgagcattggaaatctcttgcatgtgtgcttgagcaataaaagtctcttggagttgtccttgagcaatagaagtctcttagtggtgac 140  Q
    ||||||||||||| ||||| || |  ||| |||||||||| |||||| ||||||||||| || ||||||  ||||||||| || |||||    
T  36863599 ttgagcattggaagtctct-gcctacgtgtttgagcaatagaagtcttttggagttgtctttaagcaatgaaagtctcttggtagtgac 36863512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 102
Target Start/End: Original strand, 49669073 - 49669109
Alignment:
Q  66 tctcttgcatgtgtgcttgagcaataaaagtctcttg 102  Q
    |||||||||  ||||||||||||||||||||||||||    
T  49669073 tctcttgcagttgtgcttgagcaataaaagtctcttg 49669109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 102
Target Start/End: Complemental strand, 50299809 - 50299773
Alignment:
Q  66 tctcttgcatgtgtgcttgagcaataaaagtctcttg 102  Q
    |||||||||| ||||||||||||||| ||||||||||    
T  50299809 tctcttgcatttgtgcttgagcaatataagtctcttg 50299773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 51 - 326
Target Start/End: Original strand, 24494982 - 24495251
Alignment:
Q  51 tttgagcattggaaatctcttgcatgtgtgcttgagcaataaaagtctcttggagttgtccttgagcaatagaagtctcttagtggtgaccttgagcatt 150  Q
    |||||||||  ||| |||||| ||  |||| ||||||||||||||||||||| ||||||||||||||| | ||||||||||   | ||  | |||||| |    
T  24494982 tttgagcatcagaagtctctttcaattgtgattgagcaataaaagtctcttgaagttgtccttgagcattggaagtctcttgcagttgtgcatgagcagt 24495081  T
Q  151 gtaagtctcttgaaagaatcgttgagcattgaaattctcttgcaagtgtgcttgagcattgagaagtctattggaatagtccttaagcaattgtaatatg 250  Q
    | ||||||||||  ||      ||| | ||  || || || |||||||| ||||||||||  ||||||| |||||| ||||| | ||||||||||||  |    
T  24495082 gaaagtctcttggtag------tgacctttagaagtccct-gcaagtgtacttgagcatttggaagtctcttggaagagtccctgagcaattgtaatcag 24495174  T
Q  251 tgagattatagtgaaattcattggaagtgcaactagactagactact-ttgtgttgtgggaggaaccagtataaatt 326  Q
    |||||||||| |||||| | ||| ||||||||   |||| ||||||| |||||||||||||||||||||||||||||    
T  24495175 tgagattataatgaaatcccttgaaagtgcaaggggactggactactcttgtgttgtgggaggaaccagtataaatt 24495251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 186 - 325
Target Start/End: Complemental strand, 22747934 - 22747792
Alignment:
Q  186 tctcttgcaagtgtgcttgagcattgagaagtctattggaatagtccttaagcaa-ttgtaat-atgtgagattatagtgaaattcattggaagtgcaac 283  Q
    |||||||||  ||||||||||||||||||||||| |||||| ||||||| || || |||||||  | ||  ||||||||||||| | ||||||||||||     
T  22747934 tctcttgcagttgtgcttgagcattgagaagtctcttggaagagtccttgagaaatttgtaatcctatgttattatagtgaaatcccttggaagtgcaag 22747835  T
Q  284 tagactagactact-ttgtgttgtgggaggaaccagtataaat 325  Q
      |||| ||||||| ||||||| |||||||||||| |||||||    
T  22747834 gggactggactactcttgtgttatgggaggaaccaatataaat 22747792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 196 - 326
Target Start/End: Original strand, 24885845 - 24885976
Alignment:
Q  196 gtgtgcttgagcattgagaagtctattggaatagtccttaagc-aattgtaatatgtgagattatagtgaaattcattggaagtgcaactagactagact 294  Q
    |||||||||||||||||||||||| ||||  | |||||||||| |||||||||  | | |||||||||||||| | ||||||||||||   || |||| |    
T  24885845 gtgtgcttgagcattgagaagtctcttggtgt-gtccttaagcaaattgtaatcagagtgattatagtgaaatcccttggaagtgcaaagggattagaat 24885943  T
Q  295 actt-tgtgttgtgggaggaaccagtataaatt 326  Q
    |||| |||||||| |||| ||||| ||||||||    
T  24885944 acttctgtgttgtaggagaaaccattataaatt 24885976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 266
Target Start/End: Complemental strand, 26391920 - 26391832
Alignment:
Q  179 ttgaaattctcttgcaagtgtgcttgagcattgagaagtctattggaatagtccttaagcaattgtaatat-gtgagattatagtgaaa 266  Q
    |||||| ||||||||||||||| |||||| ||   |||||| ||| || |||| |||||||||||||||||  |||| |||||||||||    
T  26391920 ttgaaagtctcttgcaagtgtgtttgagcgtttgaaagtctcttgaaagagtctttaagcaattgtaatataatgaggttatagtgaaa 26391832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 172 - 282
Target Start/End: Original strand, 13693643 - 13693754
Alignment:
Q  172 ttgagcattgaaattctcttgcaagtgtgcttgagcattgagaagtctattggaatagtccttaagcaattgtaatat-gtgagattatagtgaaattca 270  Q
    ||||| ||| ||| |||||| |||||||||||||| |||   || ||| ||||||  |||||| |||||||||||| | |||||||||||| ||||| |     
T  13693643 ttgagaattaaaagtctcttccaagtgtgcttgagaatttgaaattctcttggaagtgtccttgagcaattgtaatctagtgagattatagcgaaatcct 13693742  T
Q  271 ttggaagtgcaa 282  Q
    | ||||||||||    
T  13693743 tgggaagtgcaa 13693754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 131
Target Start/End: Complemental strand, 4886539 - 4886501
Alignment:
Q  93 aagtctcttggagttgtccttgagcaatagaagtctctt 131  Q
    |||||||||| |||||| |||||||||||||||||||||    
T  4886539 aagtctcttgcagttgtgcttgagcaatagaagtctctt 4886501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 131
Target Start/End: Complemental strand, 4886599 - 4886561
Alignment:
Q  93 aagtctcttggagttgtccttgagcaatagaagtctctt 131  Q
    |||||||||| |||||| |||||||||||||||||||||    
T  4886599 aagtctcttgcagttgtgcttgagcaatagaagtctctt 4886561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 131
Target Start/End: Original strand, 23392166 - 23392204
Alignment:
Q  93 aagtctcttggagttgtccttgagcaatagaagtctctt 131  Q
    |||||||||| |||||| |||||||||||||||||||||    
T  23392166 aagtctcttgcagttgtgcttgagcaatagaagtctctt 23392204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 131
Target Start/End: Complemental strand, 26765080 - 26765042
Alignment:
Q  93 aagtctcttggagttgtccttgagcaatagaagtctctt 131  Q
    |||||||||| |||||| |||||||||||||||||||||    
T  26765080 aagtctcttgcagttgtgcttgagcaatagaagtctctt 26765042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 131
Target Start/End: Original strand, 28464899 - 28464937
Alignment:
Q  93 aagtctcttggagttgtccttgagcaatagaagtctctt 131  Q
    |||||||||| |||||| |||||||||||||||||||||    
T  28464899 aagtctcttgcagttgtgcttgagcaatagaagtctctt 28464937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 131
Target Start/End: Original strand, 30116398 - 30116436
Alignment:
Q  93 aagtctcttggagttgtccttgagcaatagaagtctctt 131  Q
    |||||||||| |||||| |||||||||||||||||||||    
T  30116398 aagtctcttgcagttgtgcttgagcaatagaagtctctt 30116436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 131
Target Start/End: Original strand, 35932568 - 35932606
Alignment:
Q  93 aagtctcttggagttgtccttgagcaatagaagtctctt 131  Q
    |||||||||| |||||| |||||||||||||||||||||    
T  35932568 aagtctcttgcagttgtgcttgagcaatagaagtctctt 35932606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 102
Target Start/End: Complemental strand, 4886548 - 4886500
Alignment:
Q  54 gagcattggaaatctcttgcatgtgtgcttgagcaataaaagtctcttg 102  Q
    |||||| |||| |||||||||  ||||||||||||||| ||||||||||    
T  4886548 gagcataggaagtctcttgcagttgtgcttgagcaatagaagtctcttg 4886500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 102
Target Start/End: Complemental strand, 10848345 - 10848309
Alignment:
Q  66 tctcttgcatgtgtgcttgagcaataaaagtctcttg 102  Q
    |||||||||  ||||||||||||||||||||||||||    
T  10848345 tctcttgcagttgtgcttgagcaataaaagtctcttg 10848309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 102
Target Start/End: Complemental strand, 11993463 - 11993427
Alignment:
Q  66 tctcttgcatgtgtgcttgagcaataaaagtctcttg 102  Q
    |||||||||  ||||||||||||||||||||||||||    
T  11993463 tctcttgcagttgtgcttgagcaataaaagtctcttg 11993427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 102
Target Start/End: Original strand, 29138969 - 29139005
Alignment:
Q  66 tctcttgcatgtgtgcttgagcaataaaagtctcttg 102  Q
    |||||||||  ||||||||||||||||||||||||||    
T  29138969 tctcttgcagttgtgcttgagcaataaaagtctcttg 29139005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 102
Target Start/End: Complemental strand, 30742555 - 30742519
Alignment:
Q  66 tctcttgcatgtgtgcttgagcaataaaagtctcttg 102  Q
    |||||||||| ||||||||||||||| ||||||||||    
T  30742555 tctcttgcatttgtgcttgagcaatagaagtctcttg 30742519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 102
Target Start/End: Complemental strand, 33932841 - 33932805
Alignment:
Q  66 tctcttgcatgtgtgcttgagcaataaaagtctcttg 102  Q
    |||||||||| ||||||||||||||| ||||||||||    
T  33932841 tctcttgcatttgtgcttgagcaatagaagtctcttg 33932805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 88
Target Start/End: Original strand, 36229355 - 36229391
Alignment:
Q  52 ttgagcattggaaatctcttgcatgtgtgcttgagca 88  Q
    |||||||||||||  ||||||||||||||||||||||    
T  36229355 ttgagcattggaagactcttgcatgtgtgcttgagca 36229391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 102
Target Start/End: Complemental strand, 42243254 - 42243218
Alignment:
Q  66 tctcttgcatgtgtgcttgagcaataaaagtctcttg 102  Q
    |||||||||| ||||||||||||||| ||||||||||    
T  42243254 tctcttgcatttgtgcttgagcaatagaagtctcttg 42243218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 91 - 131
Target Start/End: Complemental strand, 42243259 - 42243219
Alignment:
Q  91 aaaagtctcttggagttgtccttgagcaatagaagtctctt 131  Q
    |||||||||||| | |||| |||||||||||||||||||||    
T  42243259 aaaagtctcttgcatttgtgcttgagcaatagaagtctctt 42243219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 6e-25; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 52 - 182
Target Start/End: Complemental strand, 22974831 - 22974701
Alignment:
Q  52 ttgagcattggaaatctcttgcatgtgtgcttgagcaataaaagtctcttggagttgtccttgagcaatagaagtctcttagtggtgaccttgagcattg 151  Q
    ||||||||||| | |||||||| |||||| | ||||||||||| |||||||||||| |||||||| | |||||||||||| || |||||||||||||||     
T  22974831 ttgagcattggtagtctcttgcctgtgtgttggagcaataaaaatctcttggagttttccttgagtagtagaagtctcttggtagtgaccttgagcatta 22974732  T
Q  152 taagtctcttgaaagaatcgttgagcattga 182  Q
     ||||||| || ||| ||  |||||||||||    
T  22974731 gaagtctcctgcaagtatgcttgagcattga 22974701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 172 - 282
Target Start/End: Complemental strand, 22974741 - 22974630
Alignment:
Q  172 ttgagcattgaaattctcttgcaagtgtgcttgagcattgagaagtctattggaatagtccttaagcaattgtaatat-gtgagattatagtgaaattca 270  Q
    |||||||||  || |||| ||||||| ||||||||||||||||||||| |||||  ||||||| |||||||||||| | || |||||||| | |||| |     
T  22974741 ttgagcattagaagtctcctgcaagtatgcttgagcattgagaagtctcttggacgagtccttgagcaattgtaatctagttagattatactaaaatccc 22974642  T
Q  271 ttggaagtgcaa 282  Q
    ||||||||||||    
T  22974641 ttggaagtgcaa 22974630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 188 - 324
Target Start/End: Original strand, 19143409 - 19143548
Alignment:
Q  188 tcttgcaagtgtgcttgagcattgagaagtctattggaatagtccttaagcaa-ttgtaatat-gtgagattatagtgaaattcattggaagtgcaacta 285  Q
    |||||||  ||||||||||||||||||| ||| |||||| ||||||| || || ||||||| | | | |||||||||||||| | ||||||||||||       
T  19143409 tcttgcagttgtgcttgagcattgagaattctcttggaagagtccttgagaaatttgtaatctagagtgattatagtgaaatcccttggaagtgcaaggg 19143508  T
Q  286 gactagactact-ttgtgttgtgggaggaaccagtataaa 324  Q
     |||  |||||| ||||||||||||||||||| |||||||    
T  19143509 aactgaactactcttgtgttgtgggaggaacctgtataaa 19143548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 188 - 324
Target Start/End: Original strand, 20742808 - 20742947
Alignment:
Q  188 tcttgcaagtgtgcttgagcattgagaagtctattggaatagtccttaagcaa-ttgtaatat-gtgagattatagtgaaattcattggaagtgcaacta 285  Q
    |||||||  ||||||||||||||||||| ||| |||||| ||||||| || || ||||||| | | | |||||||||||||| | ||||||||||||       
T  20742808 tcttgcagttgtgcttgagcattgagaattctcttggaagagtccttgagaaatttgtaatctagagtgattatagtgaaatcccttggaagtgcaaggg 20742907  T
Q  286 gactagactact-ttgtgttgtgggaggaaccagtataaa 324  Q
     |||  |||||| ||||||||||||||||||| |||||||    
T  20742908 aactgaactactcttgtgttgtgggaggaacctgtataaa 20742947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 196 - 326
Target Start/End: Complemental strand, 20052870 - 20052739
Alignment:
Q  196 gtgtgcttgagcattgagaagtctattggaatagtccttaagcaa-ttgtaatatgtgagattatagtgaaattcattggaagtgcaactagactagact 294  Q
    |||||||||||||||||||||||| ||||  || ||||| ||||| ||||||| |  | |||||||||||||| | |  |||||||||    ||||||||    
T  20052870 gtgtgcttgagcattgagaagtctcttggtgta-tccttgagcaagttgtaatctaagtgattatagtgaaatccctaagaagtgcaagggaactagact 20052772  T
Q  295 act-ttgtgttgtgggaggaaccagtataaatt 326  Q
    ||| |||| ||||||||||||||| ||||||||    
T  20052771 actcttgttttgtgggaggaaccaatataaatt 20052739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 90 - 131
Target Start/End: Complemental strand, 27871295 - 27871254
Alignment:
Q  90 taaaagtctcttggagttgtccttgagcaatagaagtctctt 131  Q
    ||||||||||||| |||||| |||||||||||||||||||||    
T  27871295 taaaagtctcttgcagttgtgcttgagcaatagaagtctctt 27871254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 131
Target Start/End: Original strand, 15705070 - 15705108
Alignment:
Q  93 aagtctcttggagttgtccttgagcaatagaagtctctt 131  Q
    |||||||||| |||||| |||||||||||||||||||||    
T  15705070 aagtctcttgcagttgtgcttgagcaatagaagtctctt 15705108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 131
Target Start/End: Original strand, 32265302 - 32265340
Alignment:
Q  93 aagtctcttggagttgtccttgagcaatagaagtctctt 131  Q
    |||||||||| |||||| |||||||||||||||||||||    
T  32265302 aagtctcttgcagttgtgcttgagcaatagaagtctctt 32265340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 131
Target Start/End: Complemental strand, 33604482 - 33604444
Alignment:
Q  93 aagtctcttggagttgtccttgagcaatagaagtctctt 131  Q
    |||||||||| |||||| |||||||||||||||||||||    
T  33604482 aagtctcttgcagttgtgcttgagcaatagaagtctctt 33604444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 131
Target Start/End: Original strand, 48063394 - 48063432
Alignment:
Q  93 aagtctcttggagttgtccttgagcaatagaagtctctt 131  Q
    |||||||||| |||||| |||||||||||||||||||||    
T  48063394 aagtctcttgcagttgtgcttgagcaatagaagtctctt 48063432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 131
Target Start/End: Original strand, 48806462 - 48806500
Alignment:
Q  93 aagtctcttggagttgtccttgagcaatagaagtctctt 131  Q
    |||||||||| |||||| |||||||||||||||||||||    
T  48806462 aagtctcttgcagttgtgcttgagcaatagaagtctctt 48806500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 102
Target Start/End: Original strand, 12174925 - 12174961
Alignment:
Q  66 tctcttgcatgtgtgcttgagcaataaaagtctcttg 102  Q
    |||||||||| ||||||||||||||| ||||||||||    
T  12174925 tctcttgcatttgtgcttgagcaatagaagtctcttg 12174961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 102
Target Start/End: Complemental strand, 14426120 - 14426084
Alignment:
Q  66 tctcttgcatgtgtgcttgagcaataaaagtctcttg 102  Q
    |||||||||  ||||||||||||||||||||||||||    
T  14426120 tctcttgcagttgtgcttgagcaataaaagtctcttg 14426084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 91 - 131
Target Start/End: Complemental strand, 14426125 - 14426085
Alignment:
Q  91 aaaagtctcttggagttgtccttgagcaatagaagtctctt 131  Q
    |||||||||||| |||||| ||||||||||| |||||||||    
T  14426125 aaaagtctcttgcagttgtgcttgagcaataaaagtctctt 14426085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 4e-20; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 113 - 326
Target Start/End: Complemental strand, 19490519 - 19490303
Alignment:
Q  113 tgagcaatagaagtctcttagtggtgaccttgagcattgtaagtctcttgaaaga-atcgttgagcattgaaattctcttgcaagtgtgcttgagcattg 211  Q
    ||||||||||||||||||| | | || ||||||||| || |||||| |||  ||  ||| ||||||||   || ||||||||||| |||||||||||||     
T  19490519 tgagcaatagaagtctcttggagttgtccttgagcagtggaagtctattgttagtgatc-ttgagcatgagaagtctcttgcaagagtgcttgagcattt 19490421  T
Q  212 agaagtctattggaatagtccttaagcaattgta--atatgtgagattatagtgaaattcattggaagtgcaactagactagactact-ttgtgttgtgg 308  Q
     ||||||| |||||| ||| ||| ||||||| ||  ||||||||||| ||| |||||||| |||||| ||| |   |||| |||||||  | ||||||||    
T  19490420 ggaagtctcttggaagagttcttgagcaattttaatatatgtgagataataatgaaattccttggaaatgctaggggactggactactcctatgttgtgg 19490321  T
Q  309 gaggaaccagtataaatt 326  Q
    ||||||||||||||||||    
T  19490320 gaggaaccagtataaatt 19490303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 186 - 324
Target Start/End: Complemental strand, 19730986 - 19730845
Alignment:
Q  186 tctcttgcaagtgtgcttgagcattgagaagtctattggaatagtccttaagcaa-ttgtaat-atgtgagattatagtgaaattcattggaagtgcaac 283  Q
    |||||||||  ||||||||||||| ||||||||| ||||||  |||||||| ||| |||||||  ||||||||||||||||||| | |||||| |||||     
T  19730986 tctcttgcagttgtgcttgagcatagagaagtctcttggaagtgtccttaatcaatttgtaatcctgtgagattatagtgaaatcccttggaaatgcaat 19730887  T
Q  284 tagactagactac-tttgtgttgtgggaggaaccagtataaa 324  Q
      ||||||||||| ||||  |||| ||| |||||||||||||    
T  19730886 gtgactagactacttttggattgtaggatgaaccagtataaa 19730845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 83 - 208
Target Start/End: Complemental strand, 19490519 - 19490393
Alignment:
Q  83 tgagcaataaaagtctcttggagttgtccttgagcaatagaagtctcttagtggtgaccttgagcattgtaagtctcttgaaagaatcgttgagca-ttg 181  Q
    ||||||||| |||||||||||||||||||||||||| | ||||||| ||  | |||| |||||||||   |||||||||| |||| |  ||||||| |||    
T  19490519 tgagcaatagaagtctcttggagttgtccttgagcagtggaagtctattgttagtgatcttgagcatgagaagtctcttgcaagagtgcttgagcatttg 19490420  T
Q  182 aaattctcttgcaagtgtgcttgagca 208  Q
     || ||||||| ||| || ||||||||    
T  19490419 gaagtctcttggaagagttcttgagca 19490393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 66 - 132
Target Start/End: Original strand, 22076978 - 22077044
Alignment:
Q  66 tctcttgcatgtgtgcttgagcaataaaagtctcttggagttgtccttgagcaatagaagtctctta 132  Q
    |||||||||  ||||||||||||||| |||||||||| |||||| |||||||| | |||||||||||    
T  22076978 tctcttgcagttgtgcttgagcaatagaagtctcttgcagttgtgcttgagcatttgaagtctctta 22077044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 52 - 161
Target Start/End: Complemental strand, 10820746 - 10820637
Alignment:
Q  52 ttgagcattggaaatctcttgcatgtgtgcttgagcaataaaagtctcttggagttgtccttgagcaatagaagtctcttagtggtgaccttgagcattg 151  Q
    |||||||||| |||| | |||| || ||||||||||| || |||||||||||||||||| |||| || | |||||||||| | | || ||||||||| ||    
T  10820746 ttgagcattgaaaatatattgcctgcgtgcttgagcattagaagtctcttggagttgtctttgaccattggaagtctcttggagttgtccttgagcagtg 10820647  T
Q  152 taagtctctt 161  Q
     || ||||||    
T  10820646 gaaatctctt 10820637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 131
Target Start/End: Original strand, 22076973 - 22077013
Alignment:
Q  91 aaaagtctcttggagttgtccttgagcaatagaagtctctt 131  Q
    |||||||||||| |||||| |||||||||||||||||||||    
T  22076973 aaaagtctcttgcagttgtgcttgagcaatagaagtctctt 22077013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 254 - 324
Target Start/End: Complemental strand, 34659422 - 34659351
Alignment:
Q  254 gattatagtgaaattcattggaagtgcaactagactagactact-ttgtgttgtgggaggaaccagtataaa 324  Q
    |||||||||||||| | || ||||| |||   |||| ||||||| |||||||||||||||||||||||||||    
T  34659422 gattatagtgaaatcccttagaagtacaaggggactggactactcttgtgttgtgggaggaaccagtataaa 34659351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 131
Target Start/End: Complemental strand, 9717422 - 9717384
Alignment:
Q  93 aagtctcttggagttgtccttgagcaatagaagtctctt 131  Q
    |||||||||| |||||| |||||||||||||||||||||    
T  9717422 aagtctcttgcagttgtgcttgagcaatagaagtctctt 9717384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 131
Target Start/End: Complemental strand, 13601747 - 13601709
Alignment:
Q  93 aagtctcttggagttgtccttgagcaatagaagtctctt 131  Q
    ||||||||||||||||| |||||||| ||||||||||||    
T  13601747 aagtctcttggagttgtacttgagcattagaagtctctt 13601709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 131
Target Start/End: Complemental strand, 16876484 - 16876446
Alignment:
Q  93 aagtctcttggagttgtccttgagcaatagaagtctctt 131  Q
    |||||||||| |||||| |||||||||||||||||||||    
T  16876484 aagtctcttgaagttgtgcttgagcaatagaagtctctt 16876446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 131
Target Start/End: Original strand, 33352798 - 33352836
Alignment:
Q  93 aagtctcttggagttgtccttgagcaatagaagtctctt 131  Q
    |||||||||| |||||| |||||||||||||||||||||    
T  33352798 aagtctcttgcagttgtgcttgagcaatagaagtctctt 33352836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 88
Target Start/End: Original strand, 7751742 - 7751778
Alignment:
Q  52 ttgagcattggaaatctcttgcatgtgtgcttgagca 88  Q
    ||||||||||||| |||||||| ||||||||||||||    
T  7751742 ttgagcattggaagtctcttgcgtgtgtgcttgagca 7751778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 76 - 116
Target Start/End: Complemental strand, 10481742 - 10481702
Alignment:
Q  76 gtgtgcttgagcaataaaagtctcttggagttgtccttgag 116  Q
    ||||| ||||||||  |||||||||||||||||||||||||    
T  10481742 gtgtgattgagcaaggaaagtctcttggagttgtccttgag 10481702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 177 - 276
Target Start/End: Original strand, 10815273 - 10815373
Alignment:
Q  177 cattgaaattctcttgcaagtgtgcttgagcattgagaagtctattggaatagtccttaagcaattgtaatat-gtgagattatagtgaaattcattgga 275  Q
    |||||||| ||||||||  |||||||| | ||||  ||||||| |||| |  |||||| |||||||||||| | |||| ||||||||||||| | |||||    
T  10815273 cattgaaagtctcttgcccgtgtgcttaaacatttggaagtctcttggcaatgtccttgagcaattgtaatctagtgatattatagtgaaatcccttgga 10815372  T
Q  276 a 276  Q
    |    
T  10815373 a 10815373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 93 - 129
Target Start/End: Complemental strand, 19482331 - 19482295
Alignment:
Q  93 aagtctcttggagttgtccttgagcaatagaagtctc 129  Q
    |||||||||| |||||| |||||||||||||||||||    
T  19482331 aagtctcttgcagttgttcttgagcaatagaagtctc 19482295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 88
Target Start/End: Complemental strand, 27384123 - 27384087
Alignment:
Q  52 ttgagcattggaaatctcttgcatgtgtgcttgagca 88  Q
    ||||||||||||| |||||||| ||||||||||||||    
T  27384123 ttgagcattggaagtctcttgcgtgtgtgcttgagca 27384087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 88
Target Start/End: Complemental strand, 27474507 - 27474471
Alignment:
Q  52 ttgagcattggaaatctcttgcatgtgtgcttgagca 88  Q
    ||||||||||||| |||||||| ||||||||||||||    
T  27474507 ttgagcattggaagtctcttgcgtgtgtgcttgagca 27474471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 88
Target Start/End: Complemental strand, 27504005 - 27503969
Alignment:
Q  52 ttgagcattggaaatctcttgcatgtgtgcttgagca 88  Q
    ||||||||||||| |||||||| ||||||||||||||    
T  27504005 ttgagcattggaagtctcttgcgtgtgtgcttgagca 27503969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 50 - 148
Target Start/End: Complemental strand, 19564200 - 19564102
Alignment:
Q  50 ctttgagcattggaaatctcttgcatgtgtgcttgagcaataaaagtctcttggagttgtccttgagcaatagaagtctcttagtggtgaccttgagca 148  Q
    ||||||||||||||| |||||| ||||  ||||| ||||||| |||||||||| ||||||||||||||| ||||| |||||| || || ||||||||||    
T  19564200 ctttgagcattggaagtctctttcatgcatgcttaagcaatagaagtctcttgtagttgtccttgagcagtagaaatctcttggtagtaaccttgagca 19564102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 51 - 145
Target Start/End: Original strand, 22312293 - 22312387
Alignment:
Q  51 tttgagcattggaaatctcttgcatgtgtgcttgagcaataaaagtctcttggagttgtccttgagcaatagaagtctcttagtggtgaccttga 145  Q
    |||||||||| ||| |||||  | |||||||||||||| || |||||||||| |||| |||||||| | |||||||||||| || ||||||||||    
T  22312293 tttgagcatttgaagtctctatcctgtgtgcttgagcattagaagtctcttgtagttttccttgagtagtagaagtctcttggtagtgaccttga 22312387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 200 - 326
Target Start/End: Original strand, 27766113 - 27766241
Alignment:
Q  200 gcttgagcattgagaagtctattggaatagtccttaagcaattgtaatat-gtgagattatagtgaaattcattggaagtgcaactagactagactactt 298  Q
    |||||||||||  ||||||| ||| ||| |||||| |||||||||||| | ||| |||||||||||||||| ||||||||| ||   |||| ||||||||    
T  27766113 gcttgagcatttggaagtcttttgaaattgtccttgagcaattgtaatctagtgtgattatagtgaaattccttggaagtgtaaggggactggactactt 27766212  T
Q  299 -tgtgttgtgggaggaaccagtataaatt 326  Q
     ||  |||| |||||||| ||||||||||    
T  27766213 ctggtttgtaggaggaacaagtataaatt 27766241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 111 - 324
Target Start/End: Original strand, 17418079 - 17418292
Alignment:
Q  111 cttgagcaatagaagtctcttagtggtgaccttgagcattgtaagtctcttgaaagaatcgttgagcattgaaattctcttgcaagtgtgcttgagcatt 210  Q
    |||||||||  |||||||||||  | || |||||||||||| ||||||||||  ||   | |||||||  ||| | |||||| ||||||| ||||| ||     
T  17418079 cttgagcaaaggaagtctcttaaagttgtccttgagcattgaaagtctcttggtagtgactttgagcaaagaagt-ctcttgaaagtgtgattgaggatc 17418177  T
Q  211 gagaagtctattggaatagtccttaagcaattgtaat-atgtgagattatagtgaaattcattggaagtgcaactagactagactactt-tgtgttgtgg 308  Q
     |||||||| ||  || ||||||| |||||||||||| | | | |||||||||||||||| ||||||| ||||   |||| |||||||  ||||||||||    
T  17418178 -agaagtctcttaaaagagtccttgagcaattgtaatcaagagtgattatagtgaaattccttggaagcgcaaggggactggactactcctgtgttgtgg 17418276  T
Q  309 gaggaaccagtataaa 324  Q
    ||||||||| ||||||    
T  17418277 gaggaaccaatataaa 17418292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 186 - 326
Target Start/End: Complemental strand, 19564095 - 19563953
Alignment:
Q  186 tctcttgcaagtgtgcttgagcattgagaagtctattggaatagtccttaagcaattgtaatatgt-gagattatagtgaaattcattggaagtgcaact 284  Q
    ||||||||||| |||||| ||||||  ||||||| |||||| ||||||| || |||||||||  || | ||||||| |||| | | ||||||||||||      
T  19564095 tctcttgcaagggtgcttaagcattaggaagtctcttggaagagtccttcagtaattgtaatcagtagtgattataatgaattcccttggaagtgcaagg 19563996  T
Q  285 agactagactact-ttgtgttgtgggaggaaccagtataaatt 326  Q
     || | ||| |||  ||||||||||||||||||||||||||||    
T  19563995 ggattggaccactcatgtgttgtgggaggaaccagtataaatt 19563953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 190 - 267
Target Start/End: Original strand, 21770230 - 21770308
Alignment:
Q  190 ttgcaagtgtgcttgagcattgagaagtctattggaatagtccttaagcaattgtaatat-gtgagattatagtgaaat 267  Q
    ||||||||||||||||| |||  ||||||| |||||| ||||||| |||||||||||| | || |||||||||||||||    
T  21770230 ttgcaagtgtgcttgagtatttggaagtctcttggaagagtccttgagcaattgtaatctagtaagattatagtgaaat 21770308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 186 - 324
Target Start/End: Complemental strand, 8685129 - 8684988
Alignment:
Q  186 tctcttgcaagtgtgcttgagcattgagaagtctattggaatagtccttaagcaattg-taat-atgtgagattatagtgaaattcattggaagtgcaac 283  Q
    |||||||||| |||| |||||||  ||||||| | |||||| ||| ||| |||| ||  |||| ||||| |||||||||||||| | ||||||||||||     
T  8685129 tctcttgcaattgtggttgagcaaagagaagtttcttggaagagtgcttgagcattttataatcatgtgtgattatagtgaaatcccttggaagtgcaag 8685030  T
Q  284 tagactagactact-ttgtgttgtgggaggaaccagtataaa 324  Q
      |||| |||||||  ||||||||||||||||||| ||||||    
T  8685029 gggactggactactcctgtgttgtgggaggaaccactataaa 8684988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 166
Target Start/End: Original strand, 17418030 - 17418163
Alignment:
Q  32 aagtctcttacaagagccctttgagcattggaaatctcttgcatgtgtgcttgagcaataaaagtctcttggagttgtccttgagcaatagaagtctctt 131  Q
    ||||||||||   ||||||||||||||   ||  ||||| || |||||||||||||||   |||||||||  ||||||||||||||| |  |||||||||    
T  17418030 aagtctcttaggggagccctttgagcaaaagatgtctctcgcctgtgtgcttgagcaaaggaagtctcttaaagttgtccttgagcattgaaagtctctt 17418129  T
Q  132 agtggtgaccttgagcattgtaagtctcttgaaag 166  Q
     || ||||| |||||||  | ||||||||||||||    
T  17418130 ggtagtgactttgagcaaag-aagtctcttgaaag 17418163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 131
Target Start/End: Complemental strand, 6392209 - 6392171
Alignment:
Q  93 aagtctcttggagttgtccttgagcaatagaagtctctt 131  Q
    |||||||||| |||||| |||||||||||||||||||||    
T  6392209 aagtctcttgcagttgtgcttgagcaatagaagtctctt 6392171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 331
Target Start/End: Complemental strand, 17435698 - 17435620
Alignment:
Q  254 gattatagtgaaattcattggaagtgcaactagactagactact-ttgtgttgtgggaggaaccagtataaattatttt 331  Q
    |||||||||||||| | ||||||||||||   |||| || |||| |||| |||| ||||||||||||||||||| ||||    
T  17435698 gattatagtgaaatcccttggaagtgcaaagggactggagtactcttgttttgtaggaggaaccagtataaattgtttt 17435620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 132
Target Start/End: Original strand, 21770061 - 21770135
Alignment:
Q  59 ttggaaatctcttgcatgtgtgcttgagcaataaaagtctcttggagttgtccttgagcaata-gaagtctctta 132  Q
    |||||| ||||| ||||| |||||||| |  |||||||||||||||  |||||||||| |||| |||||||||||    
T  21770061 ttggaagtctctagcatgcgtgcttgatctttaaaagtctcttggaagtgtccttgagaaatatgaagtctctta 21770135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 131
Target Start/End: Original strand, 22776763 - 22776801
Alignment:
Q  93 aagtctcttggagttgtccttgagcaatagaagtctctt 131  Q
    |||||||||| |||||| |||||||||||||||||||||    
T  22776763 aagtctcttgcagttgtgcttgagcaatagaagtctctt 22776801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 131
Target Start/End: Original strand, 22782141 - 22782179
Alignment:
Q  93 aagtctcttggagttgtccttgagcaatagaagtctctt 131  Q
    |||||||||| |||||| |||||||||||||||||||||    
T  22782141 aagtctcttgcagttgtgcttgagcaatagaagtctctt 22782179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 131
Target Start/End: Original strand, 22786181 - 22786219
Alignment:
Q  93 aagtctcttggagttgtccttgagcaatagaagtctctt 131  Q
    |||||||||| |||||| |||||||||||||||||||||    
T  22786181 aagtctcttgcagttgtgcttgagcaatagaagtctctt 22786219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 131
Target Start/End: Original strand, 28551445 - 28551483
Alignment:
Q  93 aagtctcttggagttgtccttgagcaatagaagtctctt 131  Q
    |||||||||| |||||| |||||||||||||||||||||    
T  28551445 aagtctcttgcagttgtgcttgagcaatagaagtctctt 28551483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 131
Target Start/End: Original strand, 30557846 - 30557884
Alignment:
Q  93 aagtctcttggagttgtccttgagcaatagaagtctctt 131  Q
    |||||||||| |||||| |||||||||||||||||||||    
T  30557846 aagtctcttgcagttgtgcttgagcaatagaagtctctt 30557884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 131
Target Start/End: Original strand, 31328488 - 31328526
Alignment:
Q  93 aagtctcttggagttgtccttgagcaatagaagtctctt 131  Q
    |||||||||| |||||| |||||||||||||||||||||    
T  31328488 aagtctcttgcagttgtgcttgagcaatagaagtctctt 31328526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 131
Target Start/End: Original strand, 31335209 - 31335247
Alignment:
Q  93 aagtctcttggagttgtccttgagcaatagaagtctctt 131  Q
    |||||||||| |||||| |||||||||||||||||||||    
T  31335209 aagtctcttgcagttgtgcttgagcaatagaagtctctt 31335247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 159
Target Start/End: Original strand, 21548824 - 21548917
Alignment:
Q  66 tctcttgcatgtgtgcttgagcaataaaagtctcttggagttgtccttgagcaatagaagtctcttagtggtgaccttgagcattgtaagtctc 159  Q
    |||||||| || ||||||||||| || |||||||||||| |  |||||||| | | ||| |||||| || || |||||||| ||| ||||||||    
T  21548824 tctcttgcttgcgtgcttgagcattagaagtctcttggaatgttccttgagtactggaaatctcttggtagttaccttgagaattataagtctc 21548917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 326
Target Start/End: Complemental strand, 21823039 - 21822966
Alignment:
Q  254 gattatagtgaaattcattggaagtgcaactagactagactact-ttgtgttgtgggaggaaccagtataaatt 326  Q
    |||||||||||||| | ||||||||||||   |||| |||||||  ||||||||||||||||||  ||||||||    
T  21823039 gattatagtgaaatcccttggaagtgcaatgggactggactactcctgtgttgtgggaggaaccgatataaatt 21822966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 324
Target Start/End: Original strand, 26655332 - 26655409
Alignment:
Q  248 atgtgagattatagtgaaattcattggaagtgcaactagactagactactt-tgtgttgtgggaggaaccagtataaa 324  Q
    ||||| |||||||||||||| | ||| ||||||||   |||| ||| |||  ||||||||||||||||||||||||||    
T  26655332 atgtgtgattatagtgaaatcccttgaaagtgcaaggggactggaccactcctgtgttgtgggaggaaccagtataaa 26655409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 88
Target Start/End: Complemental strand, 22763366 - 22763330
Alignment:
Q  52 ttgagcattggaaatctcttgcatgtgtgcttgagca 88  Q
    ||||||||||||| |||||||| ||||||||||||||    
T  22763366 ttgagcattggaagtctcttgcctgtgtgcttgagca 22763330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 91 - 131
Target Start/End: Original strand, 28712223 - 28712263
Alignment:
Q  91 aaaagtctcttggagttgtccttgagcaatagaagtctctt 131  Q
    |||||||||||| | |||| |||||||||||||||||||||    
T  28712223 aaaagtctcttgcaattgtgcttgagcaatagaagtctctt 28712263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 66 - 131
Target Start/End: Original strand, 18152229 - 18152294
Alignment:
Q  66 tctcttgcatgtgtgcttgagcaataaaagtctcttggagttgtccttgagcaatagaagtctctt 131  Q
    |||||||||| ||||||||||||||| |||||||||| |||||| |||||||||||||||||||||    
T  18152229 tctcttgcatttgtgcttgagcaatagaagtctcttgcagttgtgcttgagcaatagaagtctctt 18152294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 66 - 131
Target Start/End: Original strand, 14990033 - 14990098
Alignment:
Q  66 tctcttgcatgtgtgcttgagcaataaaagtctcttggagttgtccttgagcaatagaagtctctt 131  Q
    |||||||||| ||||||||| ||||| |||||||||| |||||| |||||||||||||||||||||    
T  14990033 tctcttgcatttgtgcttgatcaatagaagtctcttgcagttgtgcttgagcaatagaagtctctt 14990098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 66 - 131
Target Start/End: Original strand, 14990644 - 14990709
Alignment:
Q  66 tctcttgcatgtgtgcttgagcaataaaagtctcttggagttgtccttgagcaatagaagtctctt 131  Q
    |||||||||| ||||||||||||||| |||||||||| ||||||  ||||||||||||||||||||    
T  14990644 tctcttgcatttgtgcttgagcaatagaagtctcttgcagttgtgtttgagcaatagaagtctctt 14990709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 66 - 131
Target Start/End: Complemental strand, 22662685 - 22662620
Alignment:
Q  66 tctcttgcatgtgtgcttgagcaataaaagtctcttggagttgtccttgagcaatagaagtctctt 131  Q
    |||||||||| |||||||||| |||| |||||||||| |||||| |||||||||||||||||||||    
T  22662685 tctcttgcatttgtgcttgagtaatagaagtctcttgcagttgtgcttgagcaatagaagtctctt 22662620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 66 - 131
Target Start/End: Complemental strand, 22673397 - 22673332
Alignment:
Q  66 tctcttgcatgtgtgcttgagcaataaaagtctcttggagttgtccttgagcaatagaagtctctt 131  Q
    |||||||||| ||||||||||||||| | |||||||| |||||| ||||||||||| |||||||||    
T  22673397 tctcttgcatttgtgcttgagcaatagacgtctcttgtagttgtgcttgagcaatataagtctctt 22673332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 186 - 324
Target Start/End: Original strand, 23433560 - 23433700
Alignment:
Q  186 tctcttgcaagtgtgcttgagcattgagaagtctattggaatagtccttaagcaattgtaat-atgtgagattatagtgaaattcattggaagtgcaact 284  Q
    |||||||||| |||| || ||||  ||||||| | |||||| ||||||| |||| ||||||| |||||  ||||||||||||| | ||||||||||||      
T  23433560 tctcttgcaattgtggttaagcaaagagaagtttcttggaagagtccttgagcatttgtaatcatgtgttattatagtgaaatcccttggaagtgcaagg 23433659  T
Q  285 agactagactactt-tgtgttgtgggaggaaccagtataaa 324  Q
      ||| |||||||  ||||||||||||||||||| ||||||    
T  23433660 gaactggactactcctgtgttgtgggaggaaccactataaa 23433700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 186 - 324
Target Start/End: Complemental strand, 18565495 - 18565354
Alignment:
Q  186 tctcttgcaagtgtgcttgagcattgagaagtctattggaatagtccttaagcaa-ttgtaatatgt-gagattatagtgaaattcattggaagtgcaac 283  Q
    |||||||||  ||||||||||||  ||||||||| |||| |  |||||| ||||| |||||||   | | |||||||||||||| |||||||| |||||     
T  18565495 tctcttgcagttgtgcttgagcaaagagaagtctcttggtagtgtccttgagcaagttgtaatccatagtgattatagtgaaatccattggaaatgcaag 18565396  T
Q  284 tagactagactact-ttgtgttgtgggaggaaccagtataaa 324  Q
      |||| ||||||| |||||||||||||||||| ||||||||    
T  18565395 gggactggactactcttgtgttgtgggaggaactagtataaa 18565354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 322
Target Start/End: Complemental strand, 13644732 - 13644656
Alignment:
Q  247 tatgtgagattatagtgaaattcattggaagtgcaactagactagactactt-tgtgttgtgggaggaaccagtata 322  Q
    |||||| |||||||||||||| | ||| ||||||||   |||| |||||||  ||||||||||||||||||||||||    
T  13644732 tatgtgtgattatagtgaaatcccttgaaagtgcaagcggactggactactcctgtgttgtgggaggaaccagtata 13644656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 322
Target Start/End: Complemental strand, 13745157 - 13745081
Alignment:
Q  247 tatgtgagattatagtgaaattcattggaagtgcaactagactagactactt-tgtgttgtgggaggaaccagtata 322  Q
    |||||| |||||||||||||| | ||| ||||||||   |||| |||||||  ||||||||||||||||||||||||    
T  13745157 tatgtgtgattatagtgaaatcccttgaaagtgcaagcggactggactactcctgtgttgtgggaggaaccagtata 13745081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 116
Target Start/End: Complemental strand, 28888822 - 28888763
Alignment:
Q  52 ttgagcattggaaatctcttgcatgtgtgcttgagcaataaaagtctcttggagttgtccttgag 116  Q
    ||||||||||||| |||||||||||||||||||||     |||||||||||||  ||||||||||    
T  28888822 ttgagcattggaagtctcttgcatgtgtgcttgag-----aaagtctcttggaagtgtccttgag 28888763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 131
Target Start/End: Complemental strand, 6407298 - 6407260
Alignment:
Q  93 aagtctcttggagttgtccttgagcaatagaagtctctt 131  Q
    |||||||||| |||||| |||||||||||||||||||||    
T  6407298 aagtctcttgcagttgtgcttgagcaatagaagtctctt 6407260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 131
Target Start/End: Original strand, 16681831 - 16681869
Alignment:
Q  93 aagtctcttggagttgtccttgagcaatagaagtctctt 131  Q
    ||||||||||||||||| |||||||| ||||||||||||    
T  16681831 aagtctcttggagttgtgcttgagcattagaagtctctt 16681869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 102
Target Start/End: Complemental strand, 21540510 - 21540460
Alignment:
Q  52 ttgagcattggaaatctcttgcatgtgtgcttgagcaataaaagtctcttg 102  Q
    |||||||| |||| ||||||||||||||||||||||||   ||||||||||    
T  21540510 ttgagcataggaagtctcttgcatgtgtgcttgagcaaaggaagtctcttg 21540460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 131
Target Start/End: Original strand, 40845966 - 40846004
Alignment:
Q  93 aagtctcttggagttgtccttgagcaatagaagtctctt 131  Q
    |||||||||| |||||| |||||||||||||||||||||    
T  40845966 aagtctcttgcagttgtgcttgagcaatagaagtctctt 40846004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 88 - 132
Target Start/End: Original strand, 18321730 - 18321774
Alignment:
Q  88 aataaaagtctcttggagttgtccttgagcaatagaagtctctta 132  Q
    |||| |||||||||| |||||| |||||||| |||||||||||||    
T  18321730 aatagaagtctcttgcagttgtgcttgagcattagaagtctctta 18321774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 89 - 148
Target Start/End: Complemental strand, 18565502 - 18565442
Alignment:
Q  89 ataaaagtctcttggagttgtccttgagc-aatagaagtctcttagtggtgaccttgagca 148  Q
    |||||||||||||| |||||| ||||||| || ||||||||||| || ||| |||||||||    
T  18565502 ataaaagtctcttgcagttgtgcttgagcaaagagaagtctcttggtagtgtccttgagca 18565442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 102
Target Start/End: Original strand, 33560797 - 33560833
Alignment:
Q  66 tctcttgcatgtgtgcttgagcaataaaagtctcttg 102  Q
    |||||||||| ||||||||||||||| ||||||||||    
T  33560797 tctcttgcatttgtgcttgagcaatagaagtctcttg 33560833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 66 - 131
Target Start/End: Original strand, 2508 - 2573
Alignment:
Q  66 tctcttgcatgtgtgcttgagcaataaaagtctcttggagttgtccttgagcaatagaagtctctt 131  Q
    |||||||||| ||||||||||||||| |||||||||| | || |||||||||||||||||||||||    
T  2508 tctcttgcatttgtgcttgagcaatagaagtctcttgaaattctccttgagcaatagaagtctctt 2573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 91 - 131
Target Start/End: Original strand, 2503 - 2543
Alignment:
Q  91 aaaagtctcttggagttgtccttgagcaatagaagtctctt 131  Q
    |||||||||||| | |||| |||||||||||||||||||||    
T  2503 aaaagtctcttgcatttgtgcttgagcaatagaagtctctt 2543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 46; Significance: 4e-17; HSPs: 4)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 66 - 131
Target Start/End: Complemental strand, 46273 - 46208
Alignment:
Q  66 tctcttgcatgtgtgcttgagcaataaaagtctcttggagttgtccttgagcaatagaagtctctt 131  Q
    |||||||||  ||||||||||||||| |||||||||| |||||| |||||||||||||||||||||    
T  46273 tctcttgcagttgtgcttgagcaatagaagtctcttgcagttgtgcttgagcaatagaagtctctt 46208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 66 - 131
Target Start/End: Complemental strand, 63947 - 63882
Alignment:
Q  66 tctcttgcatgtgtgcttgagcaataaaagtctcttggagttgtccttgagcaatagaagtctctt 131  Q
    |||||||||  ||||||||||||||| |||||||||| |||||| |||||||||||||||||||||    
T  63947 tctcttgcagttgtgcttgagcaatagaagtctcttgcagttgtgcttgagcaatagaagtctctt 63882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 131
Target Start/End: Complemental strand, 46276 - 46238
Alignment:
Q  93 aagtctcttggagttgtccttgagcaatagaagtctctt 131  Q
    |||||||||| |||||| |||||||||||||||||||||    
T  46276 aagtctcttgcagttgtgcttgagcaatagaagtctctt 46238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 131
Target Start/End: Complemental strand, 63950 - 63912
Alignment:
Q  93 aagtctcttggagttgtccttgagcaatagaagtctctt 131  Q
    |||||||||| |||||| |||||||||||||||||||||    
T  63950 aagtctcttgcagttgtgcttgagcaatagaagtctctt 63912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 52 - 131
Target Start/End: Original strand, 99757 - 99836
Alignment:
Q  52 ttgagcattggaaatctcttgcatgtgtgcttgagcaataaaagtctcttggagttgtccttgagcaatagaagtctctt 131  Q
    ||||||| | ||| |||||||||  ||||||||||||||| ||||||||||  ||||| |||||||||||||||||||||    
T  99757 ttgagcaatagaagtctcttgcaattgtgcttgagcaatagaagtctcttgccgttgtgcttgagcaatagaagtctctt 99836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 70 - 131
Target Start/End: Original strand, 99745 - 99806
Alignment:
Q  70 ttgcatgtgtgcttgagcaataaaagtctcttggagttgtccttgagcaatagaagtctctt 131  Q
    |||||| ||||||||||||||| |||||||||| | |||| |||||||||||||||||||||    
T  99745 ttgcatttgtgcttgagcaatagaagtctcttgcaattgtgcttgagcaatagaagtctctt 99806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0211 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 188 - 242
Target Start/End: Complemental strand, 25248 - 25194
Alignment:
Q  188 tcttgcaagtgtgcttgagcattgagaagtctattggaatagtccttaagcaatt 242  Q
    |||||||| |||||||||||||| ||||||||||||||| ||||||| |||||||    
T  25248 tcttgcaattgtgcttgagcattaagaagtctattggaagagtccttgagcaatt 25194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0527 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: scaffold0527
Description:

Target: scaffold0527; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 66 - 129
Target Start/End: Original strand, 1071 - 1136
Alignment:
Q  66 tctcttgcatgtgtgcttgagc-aataaaagtctcttggagttgtccttgagc-aatagaagtctc 129  Q
    |||||||||||||||||||||| |||| ||||||| || |||||| ||||||| ||||||||||||    
T  1071 tctcttgcatgtgtgcttgagcaaatagaagtctcctgcagttgtgcttgagcaaatagaagtctc 1136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0527; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 66 - 129
Target Start/End: Original strand, 9134 - 9199
Alignment:
Q  66 tctcttgcatgtgtgcttgagc-aataaaagtctcttggagttgtccttgagc-aatagaagtctc 129  Q
    |||||||||||||||||||||| |||| ||||||| || |||||| ||||||| ||||||||||||    
T  9134 tctcttgcatgtgtgcttgagcaaatagaagtctcctgcagttgtgcttgagcaaatagaagtctc 9199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 267
Target Start/End: Complemental strand, 382302 - 382230
Alignment:
Q  197 tgtgcttgagcattgagaagtctattggaatagtccttaagcaa-ttgtaat-atgtgagattatagtgaaat 267  Q
    |||||||||||||| |||||||| |||||| ||||||| ||||| ||||||| ||| | ||||||||||||||    
T  382302 tgtgcttgagcattaagaagtctcttggaagagtccttgagcaatttgtaatcatgagtgattatagtgaaat 382230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 131
Target Start/End: Complemental strand, 210979 - 210941
Alignment:
Q  93 aagtctcttggagttgtccttgagcaatagaagtctctt 131  Q
    |||||||||| |||||| |||||||||||||||||||||    
T  210979 aagtctcttgcagttgtgcttgagcaatagaagtctctt 210941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0908 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0908
Description:

Target: scaffold0908; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 102
Target Start/End: Original strand, 4445 - 4495
Alignment:
Q  52 ttgagcattggaaatctcttgcatgtgtgcttgagcaataaaagtctcttg 102  Q
    |||||||| ||||||||||||| |||||||||||||||   ||||||||||    
T  4445 ttgagcataggaaatctcttgcttgtgtgcttgagcaaaggaagtctcttg 4495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0488 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0488
Description:

Target: scaffold0488; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 131
Target Start/End: Complemental strand, 11777 - 11739
Alignment:
Q  93 aagtctcttggagttgtccttgagcaatagaagtctctt 131  Q
    |||||||||| |||||| |||||||||||||||||||||    
T  11777 aagtctcttgcagttgtgcttgagcaatagaagtctctt 11739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0247 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 131
Target Start/End: Original strand, 25908 - 25946
Alignment:
Q  93 aagtctcttggagttgtccttgagcaatagaagtctctt 131  Q
    |||||||||| |||||| |||||||||||||||||||||    
T  25908 aagtctcttgcagttgtgcttgagcaatagaagtctctt 25946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0217 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 131
Target Start/End: Original strand, 22661 - 22699
Alignment:
Q  93 aagtctcttggagttgtccttgagcaatagaagtctctt 131  Q
    |||||||||| |||||| |||||||||||||||||||||    
T  22661 aagtctcttgcagttgtgcttgagcaatagaagtctctt 22699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 131
Target Start/End: Complemental strand, 8736 - 8698
Alignment:
Q  93 aagtctcttggagttgtccttgagcaatagaagtctctt 131  Q
    |||||||||| |||||| |||||||||||||||||||||    
T  8736 aagtctcttgcagttgtgcttgagcaatagaagtctctt 8698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 131
Target Start/End: Original strand, 88132 - 88170
Alignment:
Q  93 aagtctcttggagttgtccttgagcaatagaagtctctt 131  Q
    |||||||||| |||||| |||||||||||||||||||||    
T  88132 aagtctcttgcagttgtgcttgagcaatagaagtctctt 88170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 131
Target Start/End: Complemental strand, 302 - 264
Alignment:
Q  93 aagtctcttggagttgtccttgagcaatagaagtctctt 131  Q
    |||||||||| |||||| |||||||||||||||||||||    
T  302 aagtctcttgcagttgtgcttgagcaatagaagtctctt 264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 131
Target Start/End: Original strand, 65937 - 65975
Alignment:
Q  93 aagtctcttggagttgtccttgagcaatagaagtctctt 131  Q
    |||||||||| |||||| |||||||||||||||||||||    
T  65937 aagtctcttgcagttgtgcttgagcaatagaagtctctt 65975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 131
Target Start/End: Original strand, 144982 - 145020
Alignment:
Q  93 aagtctcttggagttgtccttgagcaatagaagtctctt 131  Q
    |||||||||| |||||| |||||||||||||||||||||    
T  144982 aagtctcttgcagttgtgcttgagcaatagaagtctctt 145020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0515 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0515
Description:

Target: scaffold0515; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 128
Target Start/End: Complemental strand, 5764 - 5727
Alignment:
Q  91 aaaagtctcttggagttgtccttgagcaatagaagtct 128  Q
    |||||||||||| |||||| ||||||||||||||||||    
T  5764 aaaagtctcttgcagttgtgcttgagcaatagaagtct 5727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 128
Target Start/End: Complemental strand, 5774 - 5737
Alignment:
Q  91 aaaagtctcttggagttgtccttgagcaatagaagtct 128  Q
    |||||||||||| |||||| ||||||||||||||||||    
T  5774 aaaagtctcttgcagttgtgcttgagcaatagaagtct 5737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 242
Target Start/End: Original strand, 30606 - 30651
Alignment:
Q  197 tgtgcttgagcattgagaagtctattggaatagtccttaagcaatt 242  Q
    |||||||||||||||||||||||| | ||| ||||||| |||||||    
T  30606 tgtgcttgagcattgagaagtctactagaagagtccttgagcaatt 30651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1359 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: scaffold1359
Description:

Target: scaffold1359; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 91 - 131
Target Start/End: Original strand, 1184 - 1224
Alignment:
Q  91 aaaagtctcttggagttgtccttgagcaatagaagtctctt 131  Q
    |||||||||||| |||||| ||||||||||| |||||||||    
T  1184 aaaagtctcttgcagttgtgcttgagcaataaaagtctctt 1224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1359; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 102
Target Start/End: Original strand, 1189 - 1225
Alignment:
Q  66 tctcttgcatgtgtgcttgagcaataaaagtctcttg 102  Q
    |||||||||  ||||||||||||||||||||||||||    
T  1189 tctcttgcagttgtgcttgagcaataaaagtctcttg 1225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0352 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: scaffold0352
Description:

Target: scaffold0352; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 91 - 131
Target Start/End: Original strand, 1350 - 1390
Alignment:
Q  91 aaaagtctcttggagttgtccttgagcaatagaagtctctt 131  Q
    |||||||||||| |||||| ||||||||||| |||||||||    
T  1350 aaaagtctcttgcagttgtgcttgagcaataaaagtctctt 1390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0352; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 102
Target Start/End: Original strand, 1355 - 1391
Alignment:
Q  66 tctcttgcatgtgtgcttgagcaataaaagtctcttg 102  Q
    |||||||||  ||||||||||||||||||||||||||    
T  1355 tctcttgcagttgtgcttgagcaataaaagtctcttg 1391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 88
Target Start/End: Complemental strand, 14064 - 14028
Alignment:
Q  52 ttgagcattggaaatctcttgcatgtgtgcttgagca 88  Q
    ||||||||||||| |||||||| ||||||||||||||    
T  14064 ttgagcattggaagtctcttgcctgtgtgcttgagca 14028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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