View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14375_high_5 (Length: 387)
Name: NF14375_high_5
Description: NF14375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14375_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 369; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 3 - 371
Target Start/End: Original strand, 52408001 - 52408369
Alignment:
| Q |
3 |
aaggacattgaacaaaattctttacctcagaccccccaagaacatttactcattcaacgatgttatcgccttgtgggagaagaaaattggaaagaccctt |
102 |
Q |
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| T |
52408001 |
aaggacattgaacaaaattctttacctcagaccccccaagaacatttactcattcaacgatgttatcgccttgtgggagaagaaaattggaaagaccctt |
52408100 |
T |
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| Q |
103 |
gaaaaaatttatgtatcagaggataaacttctcagggatattgaaggttggtatatataatcaccttacacaaatgttgaatcttattacaatttgaaga |
202 |
Q |
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| T |
52408101 |
gaaaaaatttatgtatcagaggataaacttctcagggatattgaaggttggtatatataatcaccttacacaaatgttgaatcttattacaatttgaaga |
52408200 |
T |
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| Q |
203 |
gaattttataaaaagcgagaataaaatttatgataagggtctaatgtctatatttaaatatggaagtgttaataagcgatttattacttgttattgcaga |
302 |
Q |
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| T |
52408201 |
gaattttataaaaagcgagaataaaatttatgataagggtctaatgtctatatttaaatatggaagtgttaataagcgatttattacttgttattgcaga |
52408300 |
T |
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| Q |
303 |
gaaaccttttccagacaatgtaggattagcaatctgtcactcagtgtttgtgaaaggtgaccacacaaa |
371 |
Q |
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| T |
52408301 |
gaaaccttttccagacaatgtaggattagcaatctgtcactcagtgtttgtgaaaggtgaccacacaaa |
52408369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 3 - 145
Target Start/End: Original strand, 52405487 - 52405629
Alignment:
| Q |
3 |
aaggacattgaacaaaattctttacctcagaccccccaagaacatttactcattcaacgatgttatcgccttgtgggagaagaaaattggaaagaccctt |
102 |
Q |
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| T |
52405487 |
aaggacattgaataagattctctacataaagcccccaaagaacattatttcattcaacgagcttgtagcattgtgggagaagaagattgggaagaccctc |
52405586 |
T |
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| Q |
103 |
gaaaaaatttatgtatcagaggataaacttctcagggatattg |
145 |
Q |
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| T |
52405587 |
gaaaaaacttttcttctagaggataaacttctcaaggatattg |
52405629 |
T |
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