View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14375_low_1 (Length: 532)

Name: NF14375_low_1
Description: NF14375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14375_low_1
NF14375_low_1
[»] chr8 (3 HSPs)
chr8 (1-516)||(11402706-11403222)
chr8 (1-96)||(11402167-11402262)
chr8 (155-225)||(11402306-11402376)
[»] chr4 (5 HSPs)
chr4 (1-367)||(45965981-45966347)
chr4 (1-367)||(27730175-27730541)
chr4 (1-441)||(24146721-24147164)
chr4 (373-489)||(27730033-27730149)
chr4 (373-489)||(45966373-45966489)
[»] chr2 (4 HSPs)
chr2 (1-367)||(42913075-42913441)
chr2 (1-367)||(42300567-42300933)
chr2 (373-489)||(42912933-42913049)
chr2 (373-448)||(42300959-42301034)
[»] chr1 (2 HSPs)
chr1 (1-367)||(29282216-29282582)
chr1 (373-489)||(29282074-29282190)
[»] chr6 (2 HSPs)
chr6 (1-367)||(29303714-29304080)
chr6 (373-489)||(29304106-29304222)
[»] chr5 (6 HSPs)
chr5 (1-367)||(12528962-12529328)
chr5 (1-367)||(35841694-35842060)
chr5 (1-92)||(12643686-12643777)
chr5 (373-489)||(12528820-12528936)
chr5 (373-489)||(35842086-35842202)
chr5 (373-504)||(12643795-12643926)


Alignment Details
Target: chr8 (Bit Score: 493; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 1 - 516
Target Start/End: Complemental strand, 11403222 - 11402706
Alignment:
Q  1 gtgtatggagaagatattccggatagcaaggtggtggagaaaattctacacactatgtcgatgaagtttggtcatgtggtgactacgataatggagtcct 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  11403222 gtgtatggagaagatattccggatagcaaggtggtggagaaaattctacacactatgtcgataaagtttggtcatgtggtgactacgataatggagtcct 11403123  T
Q  101 ccaatatcgatatcttgttattagcagagttgcaaaggatgtatcgaaagtcat-tcaacaaaatattggagaagactgaaaaagtaaaggaggaagcca 199  Q
    |||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  11403122 ccaatatcaatatcttgttattagcagagtcgcaaaggatgtatcgaaagtcatgtcaacaaaatattggagaagactgaaaaagtaaaggaggaagcca 11403023  T
Q  200 tgaaaagccaggtgaacctcaataacgttgctgaatccggttagaagggagagagtaaaggtcgtgataatttcaacaatggaggaagaaaaaactttag 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11403022 tgaaaagccaggtgaacctcaataacgttgctgaatccggttagaagggagagagtaaaggtcgtgataatttcaacaatggaggaagaaaaaactttag 11402923  T
Q  300 aggtagaggttgaggaacttttagaggaagaggatgtggaaacttcgatcaatggagagacaataatttcaagaggaagaggtggaaacaattttggttc 399  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11402922 aggtagaggttgaggaacttttagaggaagaggacgtggaaacttcgatcaatggagagacaataatttcaagaggaagaggtggaaacaattttggttc 11402823  T
Q  400 taccaaccgtggcagagaaagaggttcttacaaacaagagagaccaaattacagttgttttcaccgttgaaattttaggcacaaagcagccgattgcaaa 499  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11402822 taccaaccgtggcagagaaagaggttcttacaaacaagagagaccaaattacagttgttttcaccgttgaaattttaggcacaaagcagccgattgcaaa 11402723  T
Q  500 tacaacatcaggcaaac 516  Q
    |||||||||||||||||    
T  11402722 tacaacatcaggcaaac 11402706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 11402167 - 11402262
Alignment:
Q  1 gtgtatggagaagatattccggatagcaaggtggtggagaaaattctacacactatgtcgatgaagtttggtcatgtggtgactacgataatggag 96  Q
    |||||||||||| |||||  ||||| ||||||||||||||||| ||||   | ||||| ||||||  ||| |||||||||||||||||||||||||    
T  11402167 gtgtatggagaaaatattatggataacaaggtggtggagaaaagtctatgtaatatgttgatgaaagttgatcatgtggtgactacgataatggag 11402262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 155 - 225
Target Start/End: Original strand, 11402306 - 11402376
Alignment:
Q  155 tcaacaaaatattggagaagactgaaaaagtaaaggaggaagccatgaaaagccaggtgaacctcaataac 225  Q
    |||||| ||||||| ||||||| || |||| ||||||||||||| ||||||| || |||||| ||||||||    
T  11402306 tcaacagaatattgcagaagacagagaaagcaaaggaggaagccttgaaaagtcaagtgaacttcaataac 11402376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 144; Significance: 2e-75; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 1 - 367
Target Start/End: Original strand, 45965981 - 45966347
Alignment:
Q  1 gtgtatggagaagatattccggatagcaaggtggtggagaaaattctacacactatgtcgatgaagtttggtcatgtggtgactacgataatggagtcct 100  Q
    |||||||||||||||||||  |||||||||||||||||||||||||||| ||| ||| ||||||| | || ||||||||||||||||||| ||||||||     
T  45965981 gtgtatggagaagatattcaagatagcaaggtggtggagaaaattctacgcaccatgccgatgaaatatgatcatgtggtgactacgatattggagtccc 45966080  T
Q  101 ccaatatcgatatcttgttattagcagagttgcaaaggatgtatcgaaagtcat-tcaacaaaatattggagaagactgaaaaagtaaaggaggaagcca 199  Q
       ||||||||| |||||   |||||||||||||  ||| | || ||||| ||| |||||  |||||||||||||||||||||||||||||||||||||     
T  45966081 atgatatcgataccttgtcggtagcagagttgcag-ggaagcattgaaagccatgtcaaccgaatattggagaagactgaaaaagtaaaggaggaagcct 45966179  T
Q  200 tgaaaagccaggtgaacctcaataacgttgctgaatccggttagaagggagagagtaaaggtcgtgataatttcaacaatggaggaagaaaaaactttag 299  Q
    |||| ||||||||||||||||| ||||||||||||||| || ||| ||| ||    | |  |||||| |||||||||||||||||||||  ||| || ||    
T  45966180 tgaagagccaggtgaacctcaacaacgttgctgaatccagtcagatgggtgaagccagaactcgtgacaatttcaacaatggaggaagaggaaatttcag 45966279  T
Q  300 aggtagaggttgaggaacttttagaggaagaggatgtggaaacttcgatcaatggagagacaataatt 367  Q
    ||| |||||| ||||||  ||||||||||||||| |||| |||||| | |||||||||||||| ||||    
T  45966280 aggaagaggtcgaggaagctttagaggaagaggacgtggcaacttcaaccaatggagagacaacaatt 45966347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 1 - 367
Target Start/End: Complemental strand, 27730541 - 27730175
Alignment:
Q  1 gtgtatggagaagatattccggatagcaaggtggtggagaaaattctacacactatgtcgatgaagtttggtcatgtggtgactacgataatggagtcct 100  Q
    |||||||||||||||||||  |||||||||||||||||||||||||||| ||| ||| ||||||| | || ||||||||||||||||||| ||||||||     
T  27730541 gtgtatggagaagatattcaagatagcaaggtggtggagaaaattctacgcaccatgccgatgaaatatgatcatgtggtgactacgatattggagtccc 27730442  T
Q  101 ccaatatcgatatcttgttattagcagagttgcaaaggatgtatcgaaagtcat-tcaacaaaatattggagaagactgaaaaagtaaaggaggaagcca 199  Q
       |||  |||| |||||   |||||||||||| | ||| | || ||||| ||| |||||  ||||||||| |||||||||||||||||||||||||||     
T  27730441 atgatactgataccttgtcggtagcagagttgc-agggaagcattgaaagccatgtcaaccgaatattggaaaagactgaaaaagtaaaggaggaagcct 27730343  T
Q  200 tgaaaagccaggtgaacctcaataacgttgctgaatccggttagaagggagagagtaaaggtcgtgataatttcaacaatggaggaagaaaaaactttag 299  Q
    |||| ||||||||||||||||| ||||||||||||||| || ||| ||| ||    | || |||||| |||||||||||||||||||||  ||| || ||    
T  27730342 tgaagagccaggtgaacctcaacaacgttgctgaatccagtcagatgggtgaagccagagctcgtgacaatttcaacaatggaggaagaggaaatttcag 27730243  T
Q  300 aggtagaggttgaggaacttttagaggaagaggatgtggaaacttcgatcaatggagagacaataatt 367  Q
    ||| |||||| ||||||  ||||||||||||||| |||| |||||| | |||||||||||||| ||||    
T  27730242 aggaagaggtcgaggaagctttagaggaagaggacgtggcaacttcaaccaatggagagacaacaatt 27730175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 1 - 441
Target Start/End: Original strand, 24146721 - 24147164
Alignment:
Q  1 gtgtatggagaagatattccggatagcaaggtggtggagaaaattctacacactatgtcgatgaagtttggtcatgtggtgactacgataatggagtcct 100  Q
    |||||||||||||||||||| ||||||||||| |||||||||||| ||| ||| ||| ||||||| | || ||||||||||||||| ||| |||          
T  24146721 gtgtatggagaagatattccagatagcaaggtagtggagaaaattttacgcaccatgccgatgaaatatgatcatgtggtgactacaatattgg------ 24146814  T
Q  101 ccaatatcgatatcttgttattagcagagttgcaaaggatgtatcgaaagtcat-tcaacaaaatattggagaagactgaaaaagtaaaggaggaagcca 199  Q
      |||| | ||| |||||   |||||||||||| | ||| | || ||||| ||| |||| | ||||||||| |||||||||||||||||||||||||||     
T  24146815 --aataccaataccttgtcggtagcagagttgc-agggaagcattgaaagccatgtcaatagaatattggataagactgaaaaagtaaaggaggaagcct 24146911  T
Q  200 tgaaaagccaggtgaacctcaataacgttgctgaatccggttagaagggagagagtaaaggtcgtgataatttcaacaatggaggaagaaaaaactttag 299  Q
    |||| ||||||||||| ||||| ||| ||| | |||||  ||||| ||| ||    | ||   |||| |||||||||| ||||  ||||  ||| || ||    
T  24146912 tgaagagccaggtgaagctcaacaacattgtttaatccaattagatgggtgaagccagagaatgtgacaatttcaacattggattaagaggaaatttcag 24147011  T
Q  300 aggtagaggttgaggaacttttagaggaagaggatgtggaaacttcgatcaatggagagacaataatttcaa-----------gaggaagaggtggaaac 388  Q
    || || |||| ||||||| ||||||||||||||| |||| |||||| | |||||||||||||| ||||||||            ||||||||||||||||    
T  24147012 agttaaaggtcgaggaacctttagaggaagaggacgtggcaacttcaaccaatggagagacaacaatttcaatccatcccatcaaggaagaggtggaaac 24147111  T
Q  389 aattttggttctaccaaccgtggcagagaaagaggttcttacaaacaagagag 441  Q
    |||||||| || | |||||||||||||| |||||||| |||||| ||||||||    
T  24147112 aattttggctccaacaaccgtggcagaggaagaggttattacaaccaagagag 24147164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 373 - 489
Target Start/End: Complemental strand, 27730149 - 27730033
Alignment:
Q  373 aggaagaggtggaaacaattttggttctaccaaccgtggcagagaaagaggttcttacaaacaagagagaccaaattacagttgttttcaccgttgaaat 472  Q
    ||||| ||||||||||||||||||||| |  ||||||||||||| |||||||| |||||| ||||||||| ||||| |  |||||||| |  || ||||     
T  27730149 aggaaaaggtggaaacaattttggttccaataaccgtggcagaggaagaggttattacaaccaagagagaacaaataatggttgttttaattgtggaaag 27730050  T
Q  473 tttaggcacaaagcagc 489  Q
    | | |||||||||||||    
T  27730049 tatgggcacaaagcagc 27730033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 373 - 489
Target Start/End: Original strand, 45966373 - 45966489
Alignment:
Q  373 aggaagaggtggaaacaattttggttctaccaaccgtggcagagaaagaggttcttacaaacaagagagaccaaattacagttgttttcaccgttgaaat 472  Q
    ||||| |||||||||||| |||||||| |  ||||||||||||| |||||||| |||||| ||||||||| ||||| |  |||||||| |  || ||||     
T  45966373 aggaaaaggtggaaacaactttggttccaataaccgtggcagaggaagaggttattacaaccaagagagaacaaataatggttgttttaattgtggaaag 45966472  T
Q  473 tttaggcacaaagcagc 489  Q
    | | |||||||||||||    
T  45966473 tatgggcacaaagcagc 45966489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 144; Significance: 2e-75; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 1 - 367
Target Start/End: Complemental strand, 42913441 - 42913075
Alignment:
Q  1 gtgtatggagaagatattccggatagcaaggtggtggagaaaattctacacactatgtcgatgaagtttggtcatgtggtgactacgataatggagtcct 100  Q
    |||||||||||||||||||  |||||||||||||||||||||||||||| ||| ||| ||||||| | || ||||||||||||||||||| ||||||||     
T  42913441 gtgtatggagaagatattcaagatagcaaggtggtggagaaaattctacgcaccatgccgatgaaatatgatcatgtggtgactacgatattggagtccc 42913342  T
Q  101 ccaatatcgatatcttgttattagcagagttgcaaaggatgtatcgaaagtcat-tcaacaaaatattggagaagactgaaaaagtaaaggaggaagcca 199  Q
       ||| ||||| |||||   |||||||||||||  ||| | || ||||| ||| |||||  |||||||||||||||||||||||||||||||||||||     
T  42913341 atgataccgataccttgtcggtagcagagttgcag-ggaagcattgaaagccatgtcaaccgaatattggagaagactgaaaaagtaaaggaggaagcct 42913243  T
Q  200 tgaaaagccaggtgaacctcaataacgttgctgaatccggttagaagggagagagtaaaggtcgtgataatttcaacaatggaggaagaaaaaactttag 299  Q
    |||| ||||||||||||||||| ||||||||||||||| || ||| ||| ||    | || |||||| |||||||||||||||||||||  ||| || ||    
T  42913242 tgaagagccaggtgaacctcaacaacgttgctgaatccagtcagatgggtgaagccagagctcgtgacaatttcaacaatggaggaagaggaaatttcag 42913143  T
Q  300 aggtagaggttgaggaacttttagaggaagaggatgtggaaacttcgatcaatggagagacaataatt 367  Q
    ||| |||||| ||||||  ||||||||||||||| |||| |||||| | |||||||||||||| ||||    
T  42913142 aggaagaggtcgaggaagctttagaggaagaggacgtggcaacttcaaccaatggagagacaacaatt 42913075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 1 - 367
Target Start/End: Original strand, 42300567 - 42300933
Alignment:
Q  1 gtgtatggagaagatattccggatagcaaggtggtggagaaaattctacacactatgtcgatgaagtttggtcatgtggtgactacgataatggagtcct 100  Q
    |||||||||||||||||||  |||||||||||||||||||||||||||  ||| ||| ||||||| | || ||||||||||||||||||| ||||||||     
T  42300567 gtgtatggagaagatattcaagatagcaaggtggtggagaaaattctatgcaccatgccgatgaaatatgatcatgtggtgactacgatattggagtccc 42300666  T
Q  101 ccaatatcgatatcttgttattagcagagttgcaaaggatgtatcgaaagtcat-tcaacaaaatattggagaagactgaaaaagtaaaggaggaagcca 199  Q
     | ||| ||||| |||||   |||||||||||| | ||| | || ||||| ||| |||||| |||||||||||||| |||||| |||||||||||||||     
T  42300667 acgataccgataccttgtcggtagcagagttgc-agggaagcattgaaagccatgtcaacagaatattggagaagagtgaaaatgtaaaggaggaagcct 42300765  T
Q  200 tgaaaagccaggtgaacctcaataacgttgctgaatccggttagaagggagagagtaaaggtcgtgataatttcaacaatggaggaagaaaaaactttag 299  Q
    |||| ||||||||||||||||| ||| ||| ||||||| || ||| ||| ||    | || |||||| |||||||||||||||||||||  ||| || ||    
T  42300766 tgaagagccaggtgaacctcaacaacattgttgaatccagtcagatgggtgaagccagagctcgtgacaatttcaacaatggaggaagaggaaatttcag 42300865  T
Q  300 aggtagaggttgaggaacttttagaggaagaggatgtggaaacttcgatcaatggagagacaataatt 367  Q
    ||| |||||| ||||||  ||||||||||||||| |||| |||||| | |||||||||||||| ||||    
T  42300866 aggaagaggtcgaggaagctttagaggaagaggacgtggcaacttcaaccaatggagagacaacaatt 42300933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 373 - 489
Target Start/End: Complemental strand, 42913049 - 42912933
Alignment:
Q  373 aggaagaggtggaaacaattttggttctaccaaccgtggcagagaaagaggttcttacaaacaagagagaccaaattacagttgttttcaccgttgaaat 472  Q
    ||||| ||||||||||||||||||||| |  ||||||||||||| |||||||| |||||| ||||||||| ||||| |  |||||||| |  || ||||     
T  42913049 aggaaaaggtggaaacaattttggttccaataaccgtggcagaggaagaggttattacaaccaagagagaacaaataatggttgttttaattgtggaaag 42912950  T
Q  473 tttaggcacaaagcagc 489  Q
    | | |||||||||||||    
T  42912949 tatgggcacaaagcagc 42912933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 373 - 448
Target Start/End: Original strand, 42300959 - 42301034
Alignment:
Q  373 aggaagaggtggaaacaattttggttctaccaaccgtggcagagaaagaggttcttacaaacaagagagaccaaat 448  Q
    ||||||||||||||||||||||||||| |  | ||||||||||| |||||||| |||||| ||||||||| |||||    
T  42300959 aggaagaggtggaaacaattttggttccaatagccgtggcagaggaagaggttattacaaccaagagagaacaaat 42301034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 144; Significance: 2e-75; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 1 - 367
Target Start/End: Complemental strand, 29282582 - 29282216
Alignment:
Q  1 gtgtatggagaagatattccggatagcaaggtggtggagaaaattctacacactatgtcgatgaagtttggtcatgtggtgactacgataatggagtcct 100  Q
    |||||||||||||||||||  |||||||||||||||||||||||||||| ||| ||| ||||||| | || ||||||||||||||||||| ||||||||     
T  29282582 gtgtatggagaagatattcaagatagcaaggtggtggagaaaattctacgcaccatgccgatgaaatatgatcatgtggtgactacgatattggagtccc 29282483  T
Q  101 ccaatatcgatatcttgttattagcagagttgcaaaggatgtatcgaaagtcat-tcaacaaaatattggagaagactgaaaaagtaaaggaggaagcca 199  Q
       ||| ||||| |||||   |||||||||||||  ||| | || ||||| ||| |||||  |||||||||||||||||||||||||||||||||||||     
T  29282482 atgataccgataccttgtcggtagcagagttgcag-ggaagcattgaaagccatgtcaaccgaatattggagaagactgaaaaagtaaaggaggaagcct 29282384  T
Q  200 tgaaaagccaggtgaacctcaataacgttgctgaatccggttagaagggagagagtaaaggtcgtgataatttcaacaatggaggaagaaaaaactttag 299  Q
    |||| ||||||||||||||||| ||||||||||||||| || ||| ||| ||    | || |||||| |||||||||||||||||||||  ||| || ||    
T  29282383 tgaagagccaggtgaacctcaacaacgttgctgaatccagtcagatgggtgaagccagagctcgtgacaatttcaacaatggaggaagaggaaatttcag 29282284  T
Q  300 aggtagaggttgaggaacttttagaggaagaggatgtggaaacttcgatcaatggagagacaataatt 367  Q
    ||| |||||| ||||||  ||||||||||||||| |||| |||||| | |||||||||||||| ||||    
T  29282283 aggaagaggtcgaggaagctttagaggaagaggacgtggcaacttcaaccaatggagagacaacaatt 29282216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 373 - 489
Target Start/End: Complemental strand, 29282190 - 29282074
Alignment:
Q  373 aggaagaggtggaaacaattttggttctaccaaccgtggcagagaaagaggttcttacaaacaagagagaccaaattacagttgttttcaccgttgaaat 472  Q
    ||||| ||||||||||||||||||||| |  ||||||||||||| |||||||| |||||| ||||||||| ||||| |  |||||||| |  || ||||     
T  29282190 aggaaaaggtggaaacaattttggttccaataaccgtggcagaggaagaggttattacaaccaagagagaacaaataatggttgttttaattgtggaaag 29282091  T
Q  473 tttaggcacaaagcagc 489  Q
    | | |||||||||||||    
T  29282090 tatgggcacaaagcagc 29282074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 136; Significance: 1e-70; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 1 - 367
Target Start/End: Original strand, 29303714 - 29304080
Alignment:
Q  1 gtgtatggagaagatattccggatagcaaggtggtggagaaaattctacacactatgtcgatgaagtttggtcatgtggtgactacgataatggagtcct 100  Q
    |||||||||||||||||||  |||||||||||||||||||||||||||| ||| ||| ||||||| | || ||||||||||||||||||| ||||||||     
T  29303714 gtgtatggagaagatattcaagatagcaaggtggtggagaaaattctacgcaccatgccgatgaaatatgatcatgtggtgactacgatattggagtccc 29303813  T
Q  101 ccaatatcgatatcttgttattagcagagttgcaaaggatgtatcgaaagtcat-tcaacaaaatattggagaagactgaaaaagtaaaggaggaagcca 199  Q
       ||| ||||| |||||   |||||||||||||  ||| | || ||||| ||| |||||  |||||||||||||||||||||||||||||||||||||     
T  29303814 atgataccgataccttgtcggtagcagagttgcag-ggaagcattgaaagccatgtcaaccgaatattggagaagactgaaaaagtaaaggaggaagcct 29303912  T
Q  200 tgaaaagccaggtgaacctcaataacgttgctgaatccggttagaagggagagagtaaaggtcgtgataatttcaacaatggaggaagaaaaaactttag 299  Q
    |||| ||||||||||||||||| ||||||||||||||| || ||| ||| ||   || |  |||||| |||||||||||||||||||||  ||  || ||    
T  29303913 tgaagagccaggtgaacctcaacaacgttgctgaatccagtcagatgggtgaagctagaactcgtgacaatttcaacaatggaggaagaggaagtttcag 29304012  T
Q  300 aggtagaggttgaggaacttttagaggaagaggatgtggaaacttcgatcaatggagagacaataatt 367  Q
    ||| |||| | ||||||  ||||||||||||||| |||| |||||| | |||||||||||||| ||||    
T  29304013 aggaagagatcgaggaagctttagaggaagaggacgtggcaacttcaaccaatggagagacaacaatt 29304080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 373 - 489
Target Start/End: Original strand, 29304106 - 29304222
Alignment:
Q  373 aggaagaggtggaaacaattttggttctaccaaccgtggcagagaaagaggttcttacaaacaagagagaccaaattacagttgttttcaccgttgaaat 472  Q
    ||||| ||||||||||||||||||||| |  ||||||||||||| |||||||| |||||| ||||||||| ||||| |  |||||||| |  || ||||     
T  29304106 aggaaaaggtggaaacaattttggttccaataaccgtggcagaggaagaggttattacaaccaagagagaacaaataatggttgttttaattgtggaaag 29304205  T
Q  473 tttaggcacaaagcagc 489  Q
    | | |||||||||||||    
T  29304206 tatgggcacaaagcagc 29304222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 136; Significance: 1e-70; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 1 - 367
Target Start/End: Complemental strand, 12529328 - 12528962
Alignment:
Q  1 gtgtatggagaagatattccggatagcaaggtggtggagaaaattctacacactatgtcgatgaagtttggtcatgtggtgactacgataatggagtcct 100  Q
    |||||||||||||||||||  |||||||||||||||||||||||||||| ||| ||| ||||||| | || ||||||||||||||||||| ||||||||     
T  12529328 gtgtatggagaagatattcaagatagcaaggtggtggagaaaattctacgcaccatgccgatgaaatatgatcatgtggtgactacgatattggagtccc 12529229  T
Q  101 ccaatatcgatatcttgttattagcagagttgcaaaggatgtatcgaaagtcat-tcaacaaaatattggagaagactgaaaaagtaaaggaggaagcca 199  Q
       ||| ||||| |||||   |||||||||||| | ||| | || ||||| ||| |||||  |||||||||||| ||||||||||||||||||||||||     
T  12529228 atgataccgataccttgtcggtagcagagttgc-agggaagcattgaaagccatgtcaaccgaatattggagaatactgaaaaagtaaaggaggaagcct 12529130  T
Q  200 tgaaaagccaggtgaacctcaataacgttgctgaatccggttagaagggagagagtaaaggtcgtgataatttcaacaatggaggaagaaaaaactttag 299  Q
    |||| ||||||||||||||||| ||||||||||||||| || ||| ||| ||  | | |  |||||| |||||||||||||||||||||  ||  || ||    
T  12529129 tgaagagccaggtgaacctcaacaacgttgctgaatccagtcagatgggtgaaggcagaactcgtgacaatttcaacaatggaggaagaggaagtttcag 12529030  T
Q  300 aggtagaggttgaggaacttttagaggaagaggatgtggaaacttcgatcaatggagagacaataatt 367  Q
    ||| |||||| ||||||  ||||||||||||||| |||| |||||| | |||||||||||||| ||||    
T  12529029 aggaagaggtcgaggaagctttagaggaagaggacgtggcaacttcaaccaatggagagacaacaatt 12528962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 1 - 367
Target Start/End: Original strand, 35841694 - 35842060
Alignment:
Q  1 gtgtatggagaagatattccggatagcaaggtggtggagaaaattctacacactatgtcgatgaagtttggtcatgtggtgactacgataatggagtcct 100  Q
    |||||||||||||||||||  |||||||||||||||||||||||||||| ||| ||| ||||||| | || |||||||||||||| |||| ||||||||     
T  35841694 gtgtatggagaagatattcaagatagcaaggtggtggagaaaattctacgcaccatgccgatgaaatatgatcatgtggtgactatgatattggagtccc 35841793  T
Q  101 ccaatatcgatatcttgttattagcagagttgcaaaggatgtatcgaaagtcat-tcaacaaaatattggagaagactgaaaaagtaaaggaggaagcca 199  Q
       |||  |||| |||||   |||||||||||||  ||| | || ||||| ||| |||||  |||||||||||||||||||||||||||||||||||||     
T  35841794 atgatactgataccttgtcggtagcagagttgcag-ggaagcattgaaagccatgtcaaccgaatattggagaagactgaaaaagtaaaggaggaagcct 35841892  T
Q  200 tgaaaagccaggtgaacctcaataacgttgctgaatccggttagaagggagagagtaaaggtcgtgataatttcaacaatggaggaagaaaaaactttag 299  Q
    |||| ||||||||||||||||| ||||||||||||||| || ||| ||| ||    | || |||||| |||||||||||||||||||||  ||| || ||    
T  35841893 tgaagagccaggtgaacctcaacaacgttgctgaatccagtcagatgggtgaagccagagctcgtgacaatttcaacaatggaggaagaggaaatttcag 35841992  T
Q  300 aggtagaggttgaggaacttttagaggaagaggatgtggaaacttcgatcaatggagagacaataatt 367  Q
    ||| |||||| ||||||  ||||||||||||||| |||| |||||| | |||||||||||||| ||||    
T  35841993 aggaagaggtcgaggaagctttagaggaagaggacgtggcaacttcaaccaatggagagacaacaatt 35842060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 12643686 - 12643777
Alignment:
Q  1 gtgtatggagaagatattccggatagcaaggtggtggagaaaattctacacactatgtcgatgaagtttggtcatgtggtgactacgataat 92  Q
    |||| |||| ||||||||| | ||| ||| ||||| ||||||||||||||||||||| |||||||||||| ||||||||||||||| |||||    
T  12643686 gtgtgtggaaaagatattctgaataacaaagtggtagagaaaattctacacactatgccgatgaagtttgatcatgtggtgactacaataat 12643777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 373 - 489
Target Start/End: Complemental strand, 12528936 - 12528820
Alignment:
Q  373 aggaagaggtggaaacaattttggttctaccaaccgtggcagagaaagaggttcttacaaacaagagagaccaaattacagttgttttcaccgttgaaat 472  Q
    ||||| ||||||||||||||||||||| |  ||||||||||||| |||||||| |||||| ||||||||| ||||| |  |||||||| |  || ||||     
T  12528936 aggaaaaggtggaaacaattttggttccaataaccgtggcagaggaagaggttattacaaccaagagagaacaaataatggttgttttaattgtggaaag 12528837  T
Q  473 tttaggcacaaagcagc 489  Q
    | | |||||||||||||    
T  12528836 tatgggcacaaagcagc 12528820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 373 - 489
Target Start/End: Original strand, 35842086 - 35842202
Alignment:
Q  373 aggaagaggtggaaacaattttggttctaccaaccgtggcagagaaagaggttcttacaaacaagagagaccaaattacagttgttttcaccgttgaaat 472  Q
    ||||| ||||||||||||||||||||| |  ||||||||||||| |||||||| |||||| ||||||||| ||||| |  |||||||| |  || ||||     
T  35842086 aggaaaaggtggaaacaattttggttccaataaccgtggcagaggaagaggttgttacaaccaagagagaacaaataatggttgttttaattgtggaaag 35842185  T
Q  473 tttaggcacaaagcagc 489  Q
    | | |||||||||||||    
T  35842186 tatgggcacaaagcagc 35842202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 373 - 504
Target Start/End: Original strand, 12643795 - 12643926
Alignment:
Q  373 aggaagaggtggaaacaattttggttctaccaaccgtggcagagaaagaggttcttacaaacaagagagaccaaattacagttgttttcaccgttgaaat 472  Q
    ||||||||||||| |||||||| ||| |||||| | || || || || ||| | |||||| ||||||||| ||||||| |||||||| |||  |  |||     
T  12643795 aggaagaggtggagacaattttagttataccaatcatgacaaaggaaaaggatattacaaccaagagagaacaaattatagttgtttccactatgaaaag 12643894  T
Q  473 tttaggcacaaagcagccgattgcaaatacaa 504  Q
    ||| |||||||| |||| ||||||| ||||||    
T  12643895 tttgggcacaaaacagctgattgcagatacaa 12643926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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