View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14375_low_11 (Length: 362)
Name: NF14375_low_11
Description: NF14375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14375_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 14 - 350
Target Start/End: Original strand, 10563141 - 10563466
Alignment:
| Q |
14 |
cacagaatgaggtaaaagaaaagtcaacaagtaaggtaagacaaaaggaggaaattcctagacacttctttttaactagccaatgaatcactatgaaaca |
113 |
Q |
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| T |
10563141 |
cacagaatgaggtaaaagaaaagtcaacaagtaaggtaagacaaaaggaggaaattcctagacatttctttttaactagcccatgaatcactatgaaaca |
10563240 |
T |
|
| Q |
114 |
cgaacacaaacacatggccggacaccagacaaaatgctgacaatgatatgtctagaccccaagtaattgaatgtaactacacgagatcacaagtaattga |
213 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10563241 |
cgaacacaaacacatggacggacaccagacaaaatgctgacaatgatatgtctagaccccaagtaattgaatgtaactacacgagatcacaagtaattga |
10563340 |
T |
|
| Q |
214 |
gtgtaactacatgtgtaggtg-tgttttaatgtctaaaaccagacatgtcttaaatctgaagtgtcagtgctacatagtacataacatagaagctaatca |
312 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||| |
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| T |
10563341 |
gtgtaactacatgtgtaggtgttgttttaatgtctaaaaccagacatgtcttaaatccaaagtgtcggtgct------------acatagaagctaatca |
10563428 |
T |
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| Q |
313 |
catatgagtagagacaagacaatataggtaactaagaa |
350 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||| |
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| T |
10563429 |
catatgagtagagacaagacgatataggtaactaagaa |
10563466 |
T |
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