View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14375_low_13 (Length: 338)
Name: NF14375_low_13
Description: NF14375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14375_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 102 - 282
Target Start/End: Complemental strand, 6163569 - 6163389
Alignment:
| Q |
102 |
tcaatatgaacttggagaagaagctgatttgtgatagagaaatttgtataggctattaaacttaaaactaacgaaaaagtatataaaagtgacacattat |
201 |
Q |
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| T |
6163569 |
tcaatatgaacttgcagaagaagctgatttgtgatagagaaatttgtataggctattaaacttaaaactaacggaaaagtatataaaagtgacacattat |
6163470 |
T |
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| Q |
202 |
tacaattcatgatagaactcataagtgacattagtctatcttttttacaagtgacacattatcacaattcttgatggaact |
282 |
Q |
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| T |
6163469 |
tacaattcatgatagaactcataagtgacattagtctatcttttttacaagtgacacattatcacaattcttaatggaact |
6163389 |
T |
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Target: chr8 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 97 - 283
Target Start/End: Original strand, 28158708 - 28158896
Alignment:
| Q |
97 |
agaattcaatatgaacttggagaagaagctgatttgtgatagagaaatttgtataggctattaaacttaaaactaacgaaaaagtatataaa--agtgac |
194 |
Q |
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| T |
28158708 |
agaattcaatatgaacttgcagaagaagctgatttgtgatagagaaatttgtataggctattaaacttaaaattaacggaaaagtatataaattagtgac |
28158807 |
T |
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| Q |
195 |
acattattacaattcatgatagaactcataagtgacattagtctatcttttttacaagtgacacattatcacaattcttgatggaactc |
283 |
Q |
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| T |
28158808 |
acattattacaattcatgatagaactcataagtgacattagtctatctttttttcaagtgacacattatcacaattcttgatggaactc |
28158896 |
T |
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Target: chr6 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 99 - 283
Target Start/End: Complemental strand, 14359609 - 14359425
Alignment:
| Q |
99 |
aattcaatatgaacttggagaagaagctgatttgtgatagagaaatttgtataggctattaaacttaaaactaacgaaaaagtatataaaagtgacacat |
198 |
Q |
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||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| || |
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| T |
14359609 |
aattcaatatgaacttgcagaagaagctcatttgtgatagagaaatttgtataggctattaaacttgaaactaacggaaaagtatataaaagtgacaaat |
14359510 |
T |
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| Q |
199 |
tattacaattcatgatagaactcataagtgacattagtctatcttttttacaagtgacacattatcacaattcttgatggaactc |
283 |
Q |
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|||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14359509 |
tattacaattcaggatagaactcataagtgacattagtctctcttttttacaagtgacacattatcacaattcttgatggaactc |
14359425 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 180 - 283
Target Start/End: Complemental strand, 4840069 - 4839966
Alignment:
| Q |
180 |
gtatataaaagtgacacattattacaattcatgatagaactcataagtgacattagtctatcttttttacaagtgacacattatcacaattcttgatgga |
279 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
4840069 |
gtatataaaagtgacacattattacaattcatgatagaactcataagtgacattagtctatctttttttcaagtgacacattatcacaattcttgatgga |
4839970 |
T |
|
| Q |
280 |
actc |
283 |
Q |
| |
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|||| |
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|
| T |
4839969 |
actc |
4839966 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 55692113 - 55692203
Alignment:
| Q |
1 |
tttgtccatgaaacaatgtgaagagaagaagtgaggtggcacattgtagggatggaagtggccctactagcacgattgcaagacgtggaaa |
91 |
Q |
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| T |
55692113 |
tttgtccatgaaacaatgagaagagaagaagtgaggtggcacattgtagggatggaagtgtccctactagcacgattgcaagacgtggaaa |
55692203 |
T |
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