View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14375_low_14 (Length: 324)
Name: NF14375_low_14
Description: NF14375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14375_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 184; Significance: 1e-99; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 104 - 311
Target Start/End: Complemental strand, 30177061 - 30176855
Alignment:
| Q |
104 |
caccagtaataatttgagaaaatgaagtaattgtttgtgtcggtgttggacaccggacacccctttgattagaggtgttagtgctagagattgcgaaagt |
203 |
Q |
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|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30177061 |
caccagtaataatttgagaaaatgaagtaattgtgtgtgtatgtgttggacaccggacacccctttgattagaggtgttagtgctagagattgcgaaagt |
30176962 |
T |
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| Q |
204 |
tgttgtcaaatgtggctgatatgccctcaattatgtttacattgtggccgcggaaagatgaagttgcggtctaagattgtagttggatctttttctagga |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |
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| T |
30176961 |
tgttgtcaaatgtggctgatatgccctcaattatgtttacattgtggccgcggaaagatgtagttgcggtct-agattgtagttggatctttttctagga |
30176863 |
T |
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| Q |
304 |
cctggttc |
311 |
Q |
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|||||||| |
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| T |
30176862 |
cctggttc |
30176855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 30177197 - 30177096
Alignment:
| Q |
1 |
cttttgattttcttcattgannnnnnngatatagtagtgtatagatctatgattgtaaacaatgcttgcgaccttatccatattagatgaatttgttggt |
100 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
30177197 |
cttttgattttcttcattgatttttt-gatatagtagtgtatagatctatgattgtaaacaatgcttgcgaccttatccatatcagatgaatttgttggt |
30177099 |
T |
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| Q |
101 |
tct |
103 |
Q |
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||| |
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| T |
30177098 |
tct |
30177096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 186
Target Start/End: Complemental strand, 29911391 - 29911343
Alignment:
| Q |
138 |
ttgtgtcggtgttggacaccggacacccctttgattagaggtgttagtg |
186 |
Q |
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||||||| |||||| ||||||||||| | |||||| ||||||||||||| |
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| T |
29911391 |
ttgtgtcagtgttgaacaccggacacacgtttgatcagaggtgttagtg |
29911343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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