View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14375_low_16 (Length: 253)
Name: NF14375_low_16
Description: NF14375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14375_low_16 |
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| [»] chr4 (2 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 14 - 253
Target Start/End: Complemental strand, 36289280 - 36289041
Alignment:
| Q |
14 |
cataggcagtacaagaactattcttcagacaatttccttcacaatccttactatcaacagcactcaccaaacgtgcaaaatcaggtaacttcaaaccctt |
113 |
Q |
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| T |
36289280 |
cataggcagtacaagaactattcttcagacaatttccttcacaatccttactatcaacagcactcaccaaacgtgcaaaatcaggtaacttcaaaccctt |
36289181 |
T |
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| Q |
114 |
ttgcaccaaaaaaccatcatctccaccagaactattaccacctctctcactcttcaatggagtcatcctctcacacccttttgaccaattcccactattc |
213 |
Q |
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| T |
36289180 |
ttgcaccaaaaaaccatcatctccaccagaactattaccacctctctcactcttcaatggagtcatcctcttacacccttttgaccaattcccactattc |
36289081 |
T |
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| Q |
214 |
caacttttcacatcccttggttcaaacccttttatgcatt |
253 |
Q |
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| T |
36289080 |
caacttttcacatcccttggttcaaacccttttatgcatt |
36289041 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 71
Target Start/End: Original strand, 14521271 - 14521329
Alignment:
| Q |
13 |
gcataggcagtacaagaactattcttcagacaatttccttcacaatccttactatcaac |
71 |
Q |
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| T |
14521271 |
gcataagcagtacaagaagcattctccaaacaattaccttcacaatccttagtatcaac |
14521329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 50 - 253
Target Start/End: Original strand, 12096373 - 12096576
Alignment:
| Q |
50 |
cttcacaatccttactatcaacagcactcaccaaacgtgcaaaatcaggtaacttcaaacccttttgcaccaaaaaaccatcatctccaccagaactatt |
149 |
Q |
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| T |
12096373 |
cttcacaatccttactatctgcagcactcaccaaacgtgcaaaatcaggcaacttcaaaatcctttgcaccaaaaaaccatcttctccaccaaaactatt |
12096472 |
T |
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| Q |
150 |
accacctctctcactcttcaatggagtcatcctctcacacccttttgaccaattcccactattccaacttttcacatcccttggttcaaacccttttatg |
249 |
Q |
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| T |
12096473 |
actgcctctctcacccttcaatggaatcatcctcttacacccttttgaccaattcccactatcccaacttttcacatcctttggctcaaacccttttatg |
12096572 |
T |
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| Q |
250 |
catt |
253 |
Q |
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|||| |
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| T |
12096573 |
catt |
12096576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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