View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14375_low_17 (Length: 246)

Name: NF14375_low_17
Description: NF14375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14375_low_17
NF14375_low_17
[»] chr2 (3 HSPs)
chr2 (82-157)||(25712006-25712081)
chr2 (1-79)||(32882165-32882243)
chr2 (157-234)||(32882241-32882318)


Alignment Details
Target: chr2 (Bit Score: 76; Significance: 3e-35; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 82 - 157
Target Start/End: Complemental strand, 25712081 - 25712006
Alignment:
Q  82 tcatcctccaaagtttagtttgttatcacaaaaccattctcatcctcaacaattatgtcataagaacctgaattat 157  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25712081 tcatcctccaaagtttagtttgttatcacaaaaccattctcatcctcaacaattatgtcataagaacctgaattat 25712006  T

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Target: chr2; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 32882165 - 32882243
Alignment:
Q  1 gtagcaaattcttggcagaataaatatacacacaatcattagcaatcacccaacagtgcatggtcaaacaaacactttg 79  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  32882165 gtagcaaattcttggcagaataaatatacacacaatcattagcaatcacccaagagtgcatggtcaaacaaacactttg 32882243  T

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Target: chr2; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 157 - 234
Target Start/End: Original strand, 32882241 - 32882318
Alignment:
Q  157 ttgattttggataccaagttttacatatttacaatttatgccatcaaatatcaattgtttggttcacttcgtcttcat 234  Q
    |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||    
T  32882241 ttgattttagataccaagttttacatatttacaatttatgctatcaaatatcaattgcttggttcacttcgtcttcat 32882318  T

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