View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14375_low_3 (Length: 420)

Name: NF14375_low_3
Description: NF14375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14375_low_3
NF14375_low_3
[»] chr4 (23 HSPs)
chr4 (7-407)||(19556236-19556636)
chr4 (29-301)||(34645417-34645689)
chr4 (327-407)||(7583792-7583874)
chr4 (312-404)||(15166471-15166565)
chr4 (312-407)||(17335355-17335452)
chr4 (313-407)||(9536756-9536852)
chr4 (312-406)||(17711307-17711403)
chr4 (312-407)||(17218529-17218625)
chr4 (174-301)||(8477151-8477278)
chr4 (312-371)||(17434471-17434531)
chr4 (312-371)||(25025143-25025203)
chr4 (321-374)||(8968080-8968134)
chr4 (312-407)||(22171748-22171845)
chr4 (312-371)||(9849707-9849767)
chr4 (205-265)||(25266686-25266745)
chr4 (312-370)||(11782530-11782589)
chr4 (329-371)||(16669738-16669781)
chr4 (172-239)||(17395675-17395742)
chr4 (327-407)||(10106295-10106377)
chr4 (322-371)||(13588745-13588795)
chr4 (327-371)||(9054042-9054087)
chr4 (312-407)||(12616714-12616811)
chr4 (322-371)||(14573486-14573535)
[»] chr3 (27 HSPs)
chr3 (312-407)||(34276437-34276534)
chr3 (312-403)||(13938846-13938939)
chr3 (312-371)||(52935533-52935593)
chr3 (311-407)||(12517290-12517388)
chr3 (312-410)||(2166035-2166134)
chr3 (312-401)||(19912586-19912677)
chr3 (319-407)||(8145248-8145338)
chr3 (312-407)||(18457111-18457208)
chr3 (312-371)||(819846-819906)
chr3 (312-407)||(1096761-1096857)
chr3 (312-371)||(7805779-7805839)
chr3 (321-371)||(22247034-22247084)
chr3 (312-407)||(8765674-8765771)
chr3 (312-407)||(8770564-8770661)
chr3 (312-371)||(20886905-20886965)
chr3 (316-374)||(12771206-12771265)
chr3 (327-407)||(8115309-8115391)
chr3 (319-407)||(25850955-25851045)
chr3 (312-407)||(16242194-16242290)
chr3 (89-169)||(10735055-10735133)
chr3 (312-371)||(22450486-22450546)
chr3 (312-371)||(22470402-22470462)
chr3 (312-371)||(31283903-31283963)
chr3 (327-371)||(12372347-12372392)
chr3 (319-371)||(20891652-20891705)
chr3 (312-349)||(27074012-27074049)
chr3 (312-371)||(18535807-18535867)
[»] chr6 (17 HSPs)
chr6 (310-407)||(24480024-24480123)
chr6 (313-407)||(24469798-24469894)
chr6 (312-407)||(14641632-14641729)
chr6 (312-406)||(1636635-1636730)
chr6 (311-371)||(22564548-22564609)
chr6 (312-405)||(17384025-17384120)
chr6 (321-407)||(17822032-17822121)
chr6 (321-370)||(27961252-27961302)
chr6 (162-239)||(12876678-12876755)
chr6 (355-407)||(19577581-19577634)
chr6 (312-407)||(22404254-22404351)
chr6 (312-374)||(14076430-14076493)
chr6 (312-392)||(8038050-8038132)
chr6 (327-406)||(22845866-22845947)
chr6 (331-371)||(8246650-8246690)
chr6 (312-371)||(14727171-14727231)
chr6 (312-371)||(21687129-21687189)
[»] chr1 (17 HSPs)
chr1 (311-407)||(729136-729234)
chr1 (312-407)||(21663090-21663187)
chr1 (311-407)||(15542307-15542405)
chr1 (86-244)||(33479398-33479554)
chr1 (312-406)||(12210266-12210362)
chr1 (309-407)||(18527493-18527593)
chr1 (312-407)||(21450767-21450864)
chr1 (312-383)||(14782555-14782627)
chr1 (312-392)||(15158788-15158870)
chr1 (327-391)||(27973319-27973385)
chr1 (312-407)||(26611331-26611428)
chr1 (327-407)||(22507396-22507479)
chr1 (312-371)||(26647357-26647417)
chr1 (311-371)||(15571687-15571748)
chr1 (327-371)||(16114837-16114882)
chr1 (312-371)||(27116223-27116283)
chr1 (312-371)||(33192389-33192449)
[»] chr7 (28 HSPs)
chr7 (322-407)||(8052439-8052525)
chr7 (311-404)||(4450674-4450769)
chr7 (312-407)||(3585522-3585619)
chr7 (321-407)||(8977479-8977567)
chr7 (311-407)||(2565906-2566004)
chr7 (312-407)||(11804698-11804795)
chr7 (312-383)||(26249075-26249147)
chr7 (322-407)||(18986754-18986841)
chr7 (322-407)||(19001382-19001469)
chr7 (311-407)||(13280759-13280857)
chr7 (30-127)||(13384210-13384307)
chr7 (321-407)||(5236875-5236963)
chr7 (312-407)||(9078881-9078979)
chr7 (311-371)||(9767822-9767883)
chr7 (312-407)||(19201458-19201555)
chr7 (312-371)||(10332441-10332501)
chr7 (330-407)||(10611713-10611792)
chr7 (321-371)||(21707346-21707397)
chr7 (311-349)||(3736396-3736434)
chr7 (322-371)||(9722478-9722528)
chr7 (312-349)||(2927934-2927971)
chr7 (158-239)||(11484583-11484663)
chr7 (312-349)||(19154878-19154915)
chr7 (312-349)||(20754277-20754314)
chr7 (312-407)||(23173685-23173782)
chr7 (331-371)||(145013-145053)
chr7 (309-349)||(4900336-4900376)
chr7 (311-371)||(7399365-7399425)
[»] scaffold0064 (1 HSPs)
scaffold0064 (93-194)||(59892-59991)
[»] scaffold0016 (1 HSPs)
scaffold0016 (312-407)||(4824-4921)
[»] chr8 (30 HSPs)
chr8 (316-407)||(15176436-15176529)
chr8 (312-407)||(17510904-17511001)
chr8 (312-407)||(20400334-20400431)
chr8 (309-407)||(24583168-24583268)
chr8 (327-407)||(13313286-13313368)
chr8 (312-407)||(29380960-29381058)
chr8 (312-407)||(29765391-29765489)
chr8 (312-407)||(19704986-19705083)
chr8 (312-371)||(14271878-14271938)
chr8 (314-372)||(24381988-24382047)
chr8 (312-371)||(28858873-28858932)
chr8 (312-407)||(18446859-18446956)
chr8 (312-407)||(23867829-23867926)
chr8 (311-406)||(24389757-24389854)
chr8 (312-407)||(26139788-26139885)
chr8 (312-407)||(28621604-28621701)
chr8 (312-371)||(6286319-6286379)
chr8 (327-371)||(18007573-18007617)
chr8 (321-407)||(24380362-24380450)
chr8 (312-371)||(24908941-24909001)
chr8 (312-371)||(24911162-24911222)
chr8 (312-370)||(21695413-21695472)
chr8 (309-371)||(30117655-30117718)
chr8 (311-349)||(19265882-19265920)
chr8 (327-407)||(24090893-24090975)
chr8 (312-349)||(21316843-21316880)
chr8 (312-407)||(26888486-26888583)
chr8 (327-371)||(28903982-28904027)
chr8 (312-383)||(17100206-17100278)
chr8 (311-371)||(24518587-24518647)
[»] chr5 (21 HSPs)
chr5 (312-407)||(23387547-23387644)
chr5 (92-251)||(27269335-27269494)
chr5 (311-374)||(23338925-23338989)
chr5 (312-374)||(25400738-25400801)
chr5 (312-407)||(20860339-20860436)
chr5 (313-405)||(24320522-24320617)
chr5 (71-127)||(32554860-32554916)
chr5 (312-407)||(29987956-29988054)
chr5 (327-407)||(17469573-17469655)
chr5 (312-369)||(19761581-19761639)
chr5 (312-406)||(19053102-19053198)
chr5 (314-349)||(24263752-24263787)
chr5 (322-407)||(28666492-28666579)
chr5 (327-407)||(19003780-19003862)
chr5 (312-349)||(23214825-23214862)
chr5 (319-371)||(24162018-24162071)
chr5 (319-371)||(34488894-34488947)
chr5 (321-372)||(15691304-15691356)
chr5 (328-371)||(25572494-25572538)
chr5 (312-371)||(31600075-31600135)
chr5 (321-407)||(34132086-34132174)
[»] chr2 (20 HSPs)
chr2 (322-407)||(28918188-28918275)
chr2 (312-407)||(27907522-27907619)
chr2 (327-407)||(18758301-18758383)
chr2 (312-371)||(35680100-35680160)
chr2 (312-370)||(16157084-16157143)
chr2 (321-374)||(27540274-27540328)
chr2 (311-406)||(26313179-26313276)
chr2 (312-371)||(17891768-17891828)
chr2 (306-407)||(17350978-17351081)
chr2 (312-374)||(21905760-21905823)
chr2 (321-371)||(23010052-23010103)
chr2 (327-407)||(24086321-24086403)
chr2 (314-374)||(22569088-22569149)
chr2 (312-349)||(25537616-25537653)
chr2 (312-407)||(25886191-25886288)
chr2 (312-349)||(29144695-29144732)
chr2 (89-125)||(10579298-10579334)
chr2 (312-371)||(32130699-32130759)
chr2 (312-371)||(32137912-32137972)
chr2 (312-371)||(32139334-32139394)
[»] scaffold0043 (1 HSPs)
scaffold0043 (312-371)||(88436-88496)
[»] scaffold0056 (1 HSPs)
scaffold0056 (312-407)||(23036-23133)
[»] scaffold0014 (1 HSPs)
scaffold0014 (312-374)||(192156-192219)
[»] scaffold0258 (1 HSPs)
scaffold0258 (312-407)||(20252-20349)
[»] scaffold0005 (1 HSPs)
scaffold0005 (322-371)||(243841-243890)


Alignment Details
Target: chr4 (Bit Score: 329; Significance: 0; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 7 - 407
Target Start/End: Original strand, 19556236 - 19556636
Alignment:
Q  7 tttgtgttatgtattccgctgtgtaacacccttgaaccccacatataattttaaattgatatttaacaataatttaattaacttcaaggtgctatgtcat 106  Q
    ||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||  ||||    
T  19556236 tttgttttatgtattccgatgtgtaacacccttgaaccccacatacaattttaaattaatatttaacaataattcaattaacttcaaggtgctacatcat 19556335  T
Q  107 cattaatccaaaacatgcaaaaatcatcaaaatatataaactgtcgcaacgaaattaacatctcaaaacatcataaggtcataatctcaaaatataggat 206  Q
    |||||||||||||||||||||||||||||||||| |||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  19556336 cattaatccaaaacatgcaaaaatcatcaaaatacataaacagtcgcaatgaaattaacatcttaaaacatcataaggtcataatctcaaaatatgggat 19556435  T
Q  207 acattaacatagtgaactcaatggttcctcaaacataatccgaaatgataaactaaaatatcagacacctaatcacagcctactagctaagactctaaaa 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  19556436 acattaacatagtgaactcaatggttcctcaaacataatccgaaatgataaactaaaatctcagacacctaatcacagcctactagctaagactctaaaa 19556535  T
Q  307 gaatatgatgataggtcatattacgttattcttagcatgttttcaatcattttcagtaggttttagcaccaataaggggagtattataacgattgcctat 406  Q
    ||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||||    
T  19556536 gaatatgatgacaggtcatcttacgttattcttagcatgttttcagtcattttcaataggttttagcaccaataaggggagtattagaacgattgcctat 19556635  T
Q  407 g 407  Q
    |    
T  19556636 g 19556636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 29 - 301
Target Start/End: Complemental strand, 34645689 - 34645417
Alignment:
Q  29 gtaacacccttgaa-ccccacatataattttaaattgatatttaacaataatttaattaacttcaaggtgctatgtcatcattaa-tccaaaacatgcaa 126  Q
    |||||||||||||| ||||| ||||||| ||||||    ||| | |||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||    
T  34645689 gtaacacccttgaaaccccaaatataatattaaataataattcatcaataattcaattaacttcaaggtgctacgtcatcattaaatccaaaacatgcaa 34645590  T
Q  127 aaatcatcaaaatatataaactgtcgcaacgaaattaacatctcaaaacatcataaggtcataatctcaaaatataggatacattaacatagtgaactca 226  Q
    |  | |||||  ||||||||| ||| |||| ||| ||  ||| ||||||||||||| |||||||||||||||| |  |||||||||||||||||||||||    
T  34645589 aggttatcaat-tatataaacagtcacaacaaaaatat-atcccaaaacatcataaagtcataatctcaaaatcttagatacattaacatagtgaactca 34645492  T
Q  227 atggttcctcaaacat-aatccgaaatgataaactaaaatatcagacacctaatcacagc-ctactagctaagactc 301  Q
    ||||||||||||| || ||| ||||| |||||| |||||| || ||||| |||||| ||| |||||| |||||||||    
T  34645491 atggttcctcaaaaataaattcgaaa-gataaaataaaatctctgacacataatcagagcactacta-ctaagactc 34645417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 327 - 407
Target Start/End: Complemental strand, 7583874 - 7583792
Alignment:
Q  327 ttacgttattcttagcatgtttt-caatcattttcagtaggttttagcaccaataagg-ggagtattataacgattgcctatg 407  Q
    |||||||||||||||||| |||| ||||||||||||||||||||||||| ||| |||| ||||||||| ||| ||||||||||    
T  7583874 ttacgttattcttagcatctttttcaatcattttcagtaggttttagcagcaaaaaggaggagtattagaacaattgcctatg 7583792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 312 - 404
Target Start/End: Complemental strand, 15166565 - 15166471
Alignment:
Q  312 tgatgataggtcatattacgttattcttagcatg-ttttcaatcattttcagtaggttttagcaccaataa-ggggagtattataacgattgcct 404  Q
    |||||| ||||||| |||| |||||||||||||| |||||| |||||||||||||||||||||| ||| || | ||||||||| |||||||||||    
T  15166565 tgatgacaggtcatcttacattattcttagcatgtttttcagtcattttcagtaggttttagcagcaaaaacgaggagtattagaacgattgcct 15166471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 312 - 407
Target Start/End: Original strand, 17335355 - 17335452
Alignment:
Q  312 tgatgataggtcatattacgttattcttagcatg-ttttcaatcattttcagtaggttttagcaccaataagg-ggagtattataacgattgcctatg 407  Q
    |||||| | ||||| ||||||||||||| ||||| |||||| |||||||||||| ||||||| | ||| |||| ||||||||| ||||||||||||||    
T  17335355 tgatgacatgtcatcttacgttattcttggcatgtttttcagtcattttcagtaagttttagaagcaaaaaggaggagtattagaacgattgcctatg 17335452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 313 - 407
Target Start/End: Original strand, 9536756 - 9536852
Alignment:
Q  313 gatgataggtcatattacgttattcttagcatgtttt-caatcattttcagtaggttttagcaccaataagg-ggagtattataacgattgcctatg 407  Q
    ||||| ||||| | ||| ||||||||||||||||||| |||| |||||||||||||||||||| ||| |||| ||||||||| ||| ||| ||||||    
T  9536756 gatgacaggtcctcttatgttattcttagcatgtttttcaattattttcagtaggttttagcagcaaaaaggaggagtattacaacaattacctatg 9536852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 312 - 406
Target Start/End: Complemental strand, 17711403 - 17711307
Alignment:
Q  312 tgatgataggtcatattacgttattcttagcatg-ttttcaatcattttcagtaggttttagcaccaataa-ggggagtattataacgattgcctat 406  Q
    |||||| |||||| ||||| |||||||||||||| |||| | |||||||||||||||||||||  ||| || | ||||||||| |||||||||||||    
T  17711403 tgatgacaggtcaaattacattattcttagcatgttttttagtcattttcagtaggttttagctgcaaaaatgaggagtattagaacgattgcctat 17711307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 312 - 407
Target Start/End: Complemental strand, 17218625 - 17218529
Alignment:
Q  312 tgatgataggtcatattacgttattcttagcatgtttt-caatcattttcagtaggttttagcaccaataagg-ggagtattataacgattgcctatg 407  Q
    |||||||||||||| ||||||||||||||||||||||| || ||| || ||||| ||||| | | ||| |||| ||||||||| ||||||||||||||    
T  17218625 tgatgataggtcatcttacgttattcttagcatgtttttcagtcaatt-cagtaagttttcgaagcaaaaaggaggagtattagaacgattgcctatg 17218529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 174 - 301
Target Start/End: Original strand, 8477151 - 8477278
Alignment:
Q  174 acatcataaggtcataatctcaaaatataggatacattaacatagtgaactcaatggttcctcaaacataatccgaaatgataaactaaaatatcagaca 273  Q
    |||| |||| |||||||||||||||| |   || ||| ||||||||||||||||||||| | ||||||||||| |||| |||||| || |||  | ||||    
T  8477151 acataataaagtcataatctcaaaatctcatatgcatcaacatagtgaactcaatggtttcccaaacataatctgaaa-gataaaatagaattcccgaca 8477249  T
Q  274 -cctaatcacagcctactagctaagactc 301  Q
     |||||||| ||| ||||| |||||||||    
T  8477250 tcctaatcagagcttactaactaagactc 8477278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 312 - 371
Target Start/End: Complemental strand, 17434531 - 17434471
Alignment:
Q  312 tgatgataggtcatattacgttattcttagcatgttttcaa-tcattttcagtaggtttta 371  Q
    |||||| ||||||| |||||||||| |||||||||||| || |||||||||||||||||||    
T  17434531 tgatgacaggtcatcttacgttatttttagcatgtttttaagtcattttcagtaggtttta 17434471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 312 - 371
Target Start/End: Complemental strand, 25025203 - 25025143
Alignment:
Q  312 tgatgataggtcatattacgttattcttagcatg-ttttcaatcattttcagtaggtttta 371  Q
    |||||| ||||||| ||||||||||||||||||| |||||| ||||||| |||||||||||    
T  25025203 tgatgacaggtcatcttacgttattcttagcatgtttttcagtcatttttagtaggtttta 25025143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 321 - 374
Target Start/End: Original strand, 8968080 - 8968134
Alignment:
Q  321 gtcatattacgttattcttagcatg-ttttcaatcattttcagtaggttttagca 374  Q
    ||||| ||||||||||||||||||| |||||| ||||||| ||||||||||||||    
T  8968080 gtcatcttacgttattcttagcatgtttttcagtcattttaagtaggttttagca 8968134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 312 - 407
Target Start/End: Complemental strand, 22171845 - 22171748
Alignment:
Q  312 tgatgataggtcatattacgttattcttagcatgttttcaatc-attttcagtaggttttagcaccaataagg-ggagtattataacgattgcctatg 407  Q
    |||||| ||||||| |||| ||||||||||||||||||    | ||||||| |||||||||||| ||| |||| ||||||||| || |||||||||||    
T  22171845 tgatgacaggtcatcttacattattcttagcatgtttttctgctattttcattaggttttagcagcaaaaaggaggagtattagaatgattgcctatg 22171748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 312 - 371
Target Start/End: Original strand, 9849707 - 9849767
Alignment:
Q  312 tgatgataggtcatattacgttattcttagcatg-ttttcaatcattttcagtaggtttta 371  Q
    |||||| ||||||| ||||||||||||||| ||| |||||| ||||||| |||||||||||    
T  9849707 tgatgacaggtcatcttacgttattcttagtatgtttttcagtcatttttagtaggtttta 9849767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 265
Target Start/End: Original strand, 25266686 - 25266745
Alignment:
Q  205 atacattaacatagtgaactcaatggttcctcaaacataatccgaaatgataaactaaaat 265  Q
    |||||| ||| ||| ||||||||||||||||||||||||||| |||| |||||| ||||||    
T  25266686 atacatcaacctagagaactcaatggttcctcaaacataatctgaaa-gataaaataaaat 25266745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 312 - 370
Target Start/End: Complemental strand, 11782589 - 11782530
Alignment:
Q  312 tgatgataggtcatattacgttattcttagcatg-ttttcaatcattttcagtaggtttt 370  Q
    |||||||||||||| |||||||||||||| |||| |||| | ||||||| ||||||||||    
T  11782589 tgatgataggtcatcttacgttattcttaacatgttttttagtcattttaagtaggtttt 11782530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 329 - 371
Target Start/End: Original strand, 16669738 - 16669781
Alignment:
Q  329 acgttattcttagcatgtttt-caatcattttcagtaggtttta 371  Q
    ||||||||||||||||||||| |||||| |||||||||||||||    
T  16669738 acgttattcttagcatgtttttcaatcaatttcagtaggtttta 16669781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 172 - 239
Target Start/End: Original strand, 17395675 - 17395742
Alignment:
Q  172 aaacatcataaggtcataatctcaaaatataggatacattaacatagtgaactcaatggttcctcaaa 239  Q
    ||||||||||| |||||||| ||||||| |  ||||||| || |||| ||||||||||||| ||||||    
T  17395675 aaacatcataaagtcataatatcaaaatctcagatacatcaaaatagagaactcaatggttactcaaa 17395742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 407
Target Start/End: Complemental strand, 10106377 - 10106295
Alignment:
Q  327 ttacgttattcttagcatgtttt-caatcattttcagtaggttttagcaccaataagg-ggagtattataacgattgcctatg 407  Q
    |||| |||||||||||||||||| |  |||||||||||||||||||||  ||| |||| ||||||||| ||| |||| |||||    
T  10106377 ttacattattcttagcatgtttttctgtcattttcagtaggttttagctgcaaaaaggaggagtattacaacaattgtctatg 10106295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 322 - 371
Target Start/End: Complemental strand, 13588795 - 13588745
Alignment:
Q  322 tcatattacgttattcttagcatgtttt-caatcattttcagtaggtttta 371  Q
    |||| |||||||||| |||||||||||| |||||||||||||||| |||||    
T  13588795 tcatcttacgttattattagcatgtttttcaatcattttcagtagatttta 13588745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 327 - 371
Target Start/End: Complemental strand, 9054087 - 9054042
Alignment:
Q  327 ttacgttattcttagcatgtttt-caatcattttcagtaggtttta 371  Q
    |||||||| |||||||||||||| || |||||||||||||||||||    
T  9054087 ttacgttaatcttagcatgttttgcagtcattttcagtaggtttta 9054042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 407
Target Start/End: Complemental strand, 12616811 - 12616714
Alignment:
Q  312 tgatgataggtcatattacgttattcttagcatgtttt-caatcattttcagtaggttttagcaccaataagg-ggagtattataacgattgcctatg 407  Q
    |||||| | ||||| |||||| ||||||| |||||||| || || ||||||||||||||||||| ||| ||||  |||||||| ||| ||| ||||||    
T  12616811 tgatgacatgtcatcttacgtaattcttaacatgtttttcagtctttttcagtaggttttagcagcaaaaaggatgagtattagaacaatttcctatg 12616714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 322 - 371
Target Start/End: Complemental strand, 14573535 - 14573486
Alignment:
Q  322 tcatattacgttattcttagcatgttttcaatcattttcagtaggtttta 371  Q
    |||| |||||||||||||||||| |||| | ||||||| |||||||||||    
T  14573535 tcatcttacgttattcttagcatatttttagtcattttaagtaggtttta 14573486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 3e-24; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 312 - 407
Target Start/End: Original strand, 34276437 - 34276534
Alignment:
Q  312 tgatgataggtcatattacgttattcttagcat-gttttcaatcattttcagtaggttttagcaccaataagg-ggagtattataacgattgcctatg 407  Q
    |||||| ||||||| ||||||||||||||||||  |||||| |||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||    
T  34276437 tgatgacaggtcattttacgttattcttagcatatttttcagtcattttcagtaggttttagcagcaaaaaggaggagtattataacgattgcctatg 34276534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 312 - 403
Target Start/End: Original strand, 13938846 - 13938939
Alignment:
Q  312 tgatgataggtcatattacgttattcttagcatgtt-ttcaatcattttcagtaggttttagcaccaataagg-ggagtattataacgattgcc 403  Q
    |||||| ||||||| ||||||||||||||||||||| || || || |||||||||||||||||||||| |||| ||||||||| ||||||||||    
T  13938846 tgatgacaggtcattttacgttattcttagcatgttgttaaagcaatttcagtaggttttagcaccaaaaaggaggagtattagaacgattgcc 13938939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 312 - 371
Target Start/End: Original strand, 52935533 - 52935593
Alignment:
Q  312 tgatgataggtcatattacgttattcttagcatg-ttttcaatcattttcagtaggtttta 371  Q
    |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||    
T  52935533 tgatgataggtcatcttacgttattcttagcatgtttttcaatcattttcagtaggtttta 52935593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 311 - 407
Target Start/End: Complemental strand, 12517388 - 12517290
Alignment:
Q  311 atgatgataggtcatattacgttattcttagcat-gttttcaatcattttcagtaggttttagcaccaataagg-ggagtattataacgattgcctatg 407  Q
    ||||||| ||||||| ||||||||||||||||||  |||||| |||||||||||||||||||| | ||| |||| ||||||||| || |||||||||||    
T  12517388 atgatgacaggtcatcttacgttattcttagcatctttttcagtcattttcagtaggttttagtagcaaaaaggaggagtattagaatgattgcctatg 12517290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 312 - 410
Target Start/End: Original strand, 2166035 - 2166134
Alignment:
Q  312 tgatgataggtcatattacgttattcttagcatgttttcaatcattttcagtaggttttagcaccaataagg-ggagtattataacgattgcctatgctt 410  Q
    |||||| |||||||  |||||||||||| |||||||||   |||||||||||||||||||||| ||| |||| ||||||||| ||||||||  |||||||    
T  2166035 tgatgacaggtcatgatacgttattcttggcatgttttttgtcattttcagtaggttttagcaacaaaaaggaggagtattaaaacgattgaatatgctt 2166134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 312 - 401
Target Start/End: Complemental strand, 19912677 - 19912586
Alignment:
Q  312 tgatgataggtcatattacgttattcttagcat-gttttcaatcattttcagtaggttttagca-ccaataaggggagtattataacgattg 401  Q
    |||||| ||||||| ||||||||||||||||||  |||||| |||||||||||||||||||||| | || ||| ||||||||| ||||||||    
T  19912677 tgatgacaggtcatcttacgttattcttagcatatttttcagtcattttcagtaggttttagcagcaaaaaagaggagtattagaacgattg 19912586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 319 - 407
Target Start/End: Complemental strand, 8145338 - 8145248
Alignment:
Q  319 aggtcatattacgttattcttagcatgtttt-caatcattttcagtaggttttagcaccaataa-ggggagtattataacgattgcctatg 407  Q
    ||||||| |||| |||||||||||||||||| |||||| |||||||||||||||||| ||| || | ||||||||| ||| ||||||||||    
T  8145338 aggtcatcttacattattcttagcatgtttttcaatcaatttcagtaggttttagcagcaaaaatgaggagtattaaaacaattgcctatg 8145248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 312 - 407
Target Start/End: Original strand, 18457111 - 18457208
Alignment:
Q  312 tgatgataggtcatattacgttattcttagcatgtt-ttcaatcattttcagtaggttttagcaccaataagg-ggagtattataacgattgcctatg 407  Q
    |||||| ||||||| ||||| ||||||||| ||||| |||| | |||||||||||||||||||| ||| |||| ||||||||| ||| ||||||||||    
T  18457111 tgatgacaggtcatcttacgctattcttaggatgttattcagttattttcagtaggttttagcagcaaaaaggaggagtattagaacaattgcctatg 18457208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 312 - 371
Target Start/End: Original strand, 819846 - 819906
Alignment:
Q  312 tgatgataggtcatattacgttattcttagcatg-ttttcaatcattttcagtaggtttta 371  Q
    |||||||||||||| ||||||||||||||||||| |||||| ||| |||||||||||||||    
T  819846 tgatgataggtcatcttacgttattcttagcatgtttttcagtcaatttcagtaggtttta 819906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 312 - 407
Target Start/End: Original strand, 1096761 - 1096857
Alignment:
Q  312 tgatgataggtcatattacgttattcttagcatgttttcaatcattttcagtaggttttagcaccaataagg-ggagtattataacgattgcctatg 407  Q
    |||||| ||||||| ||||||||||||| ||||||||| | |||||||||||  ||||||||| ||| |||| ||| || || ||||||||||||||    
T  1096761 tgatgacaggtcatcttacgttattctttgcatgtttttagtcattttcagtcagttttagcagcaaaaaggaggattactagaacgattgcctatg 1096857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 312 - 371
Target Start/End: Complemental strand, 7805839 - 7805779
Alignment:
Q  312 tgatgataggtcatattacgttattcttagcatg-ttttcaatcattttcagtaggtttta 371  Q
    |||||| ||||||| ||||||||||||||||||| ||||||||||||||||||| ||||||    
T  7805839 tgatgacaggtcatcttacgttattcttagcatgtttttcaatcattttcagtatgtttta 7805779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 321 - 371
Target Start/End: Complemental strand, 22247084 - 22247034
Alignment:
Q  321 gtcatattacgttattcttagcatgttttcaatcattttcagtaggtttta 371  Q
    ||||| |||||||||||||||||| |||||| |||||||||||||||||||    
T  22247084 gtcatcttacgttattcttagcattttttcagtcattttcagtaggtttta 22247034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 312 - 407
Target Start/End: Complemental strand, 8765771 - 8765674
Alignment:
Q  312 tgatgataggtcatattacgttattcttagcatg-ttttcaatcattttcagtaggttttagc-accaataaggggagtattataacgattgcctatg 407  Q
    ||||||||| ||||  |||||||||||||||||| |||||| ||||||||| |||||||||||  | || ||| ||||||||| ||||||| ||||||    
T  8765771 tgatgatagatcatcctacgttattcttagcatgtttttcagtcattttcaataggttttagctgcaaaaaagaggagtattagaacgatttcctatg 8765674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 312 - 407
Target Start/End: Complemental strand, 8770661 - 8770564
Alignment:
Q  312 tgatgataggtcatattacgttattcttagcatg-ttttcaatcattttcagtaggttttagc-accaataaggggagtattataacgattgcctatg 407  Q
    ||||||||| ||||  |||||||||||||||||| |||||| ||||||||| |||||||||||  | || ||| ||||||||| ||||||| ||||||    
T  8770661 tgatgatagatcatcctacgttattcttagcatgtttttcagtcattttcaataggttttagctgcaaaaaagaggagtattagaacgatttcctatg 8770564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 312 - 371
Target Start/End: Complemental strand, 20886965 - 20886905
Alignment:
Q  312 tgatgataggtcatattacgttattcttagcatg-ttttcaatcattttcagtaggtttta 371  Q
    |||||| ||||||| ||||||||||||||||||| ||||||||| |||||| |||||||||    
T  20886965 tgatgacaggtcatcttacgttattcttagcatgtttttcaatcgttttcaataggtttta 20886905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 316 - 374
Target Start/End: Original strand, 12771206 - 12771265
Alignment:
Q  316 gataggtcatattacgttattcttagcatg-ttttcaatcattttcagtaggttttagca 374  Q
    |||||||||| ||||||||||||||||||| |||||| ||||||||||||  ||||||||    
T  12771206 gataggtcatcttacgttattcttagcatgtttttcagtcattttcagtatattttagca 12771265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 327 - 407
Target Start/End: Original strand, 8115309 - 8115391
Alignment:
Q  327 ttacgttattcttagcatgtttt-caatcattttcagtaggttttagcaccaataagg-ggagtattataacgattgcctatg 407  Q
    |||||||||| |||||||||||| || | ||||| |||||||||||| | ||| |||| ||||||||| ||||||||||||||    
T  8115309 ttacgttatttttagcatgttttccagttattttgagtaggttttagtagcaaaaaggaggagtattagaacgattgcctatg 8115391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 319 - 407
Target Start/End: Original strand, 25850955 - 25851045
Alignment:
Q  319 aggtcatattacgttattcttagcatg-ttttcaatcattttcagtaggttttagcaccaataagg-ggagtattataacgattgcctatg 407  Q
    ||||||| ||| ||||||||||||||| |||||| | ||||| |||||| ||||||| ||  |||| ||||||||| ||||||||||||||    
T  25850955 aggtcatcttatgttattcttagcatgtttttcagttatttttagtaggatttagcagcagaaaggaggagtattaaaacgattgcctatg 25851045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 312 - 407
Target Start/End: Original strand, 16242194 - 16242290
Alignment:
Q  312 tgatgataggtcatattacgttattcttagcat-gttttcaatcattttcagtaggttttagcaccaataag-gggagtattataacgattgcctatg 407  Q
    |||||| ||||||| ||||||||||||||||||  |||||| ||||||| |||| |||||||||  || |||  ||||||||| ||||||||||||||    
T  16242194 tgatgacaggtcatcttacgttattcttagcatatttttcactcatttttagta-gttttagcagaaaaaagaaggagtattagaacgattgcctatg 16242290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 169
Target Start/End: Complemental strand, 10735133 - 10735055
Alignment:
Q  89 ttcaaggtgctatgtcatcattaatccaaaacatgcaaaaatcatcaaaatatataaactgtcgcaacgaaattaacatct 169  Q
    |||||||||||| |||||||||||||||||| ||||| | | ||||| || ||||||| |||| |||||||| ||||||||    
T  10735133 ttcaaggtgctacgtcatcattaatccaaaaaatgcatata-catcataa-atataaattgtcacaacgaaaataacatct 10735055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 312 - 371
Target Start/End: Complemental strand, 22450546 - 22450486
Alignment:
Q  312 tgatgataggtcatattacgttattcttagcatg-ttttcaatcattttcagtaggtttta 371  Q
    |||| ||||||||| ||||||||||||||||||| |||||| || |||||| |||||||||    
T  22450546 tgataataggtcatcttacgttattcttagcatgcttttcagtcgttttcattaggtttta 22450486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 312 - 371
Target Start/End: Original strand, 22470402 - 22470462
Alignment:
Q  312 tgatgataggtcatattacgttattcttagcatg-ttttcaatcattttcagtaggtttta 371  Q
    |||||| | ||||| ||||||||||||||||||| |||||| |||||||||||| ||||||    
T  22470402 tgatgacatgtcatcttacgttattcttagcatgtttttcagtcattttcagtatgtttta 22470462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 312 - 371
Target Start/End: Original strand, 31283903 - 31283963
Alignment:
Q  312 tgatgataggtcatattacgttattcttagcatg-ttttcaatcattttcagtaggtttta 371  Q
    |||||| ||||||| | |||||||||||| |||| |||||||||||||| |||||||||||    
T  31283903 tgatgacaggtcatctaacgttattcttatcatgtttttcaatcattttaagtaggtttta 31283963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 327 - 371
Target Start/End: Original strand, 12372347 - 12372392
Alignment:
Q  327 ttacgttattcttagcatgtttt-caatcattttcagtaggtttta 371  Q
    |||||| ||||||||||| |||| ||||||||||||||||||||||    
T  12372347 ttacgtaattcttagcatttttttcaatcattttcagtaggtttta 12372392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 319 - 371
Target Start/End: Original strand, 20891652 - 20891705
Alignment:
Q  319 aggtcatattacgttattcttagcat-gttttcaatcattttcagtaggtttta 371  Q
    ||||||| ||||||||||||||||||  |||||| || ||||||||||||||||    
T  20891652 aggtcatcttacgttattcttagcatatttttcagtcgttttcagtaggtttta 20891705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 349
Target Start/End: Complemental strand, 27074049 - 27074012
Alignment:
Q  312 tgatgataggtcatattacgttattcttagcatgtttt 349  Q
    |||||||||||||| |||||||||| ||||||||||||    
T  27074049 tgatgataggtcatcttacgttatttttagcatgtttt 27074012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 312 - 371
Target Start/End: Complemental strand, 18535867 - 18535807
Alignment:
Q  312 tgatgataggtcatattacgttattcttagcatg-ttttcaatcattttcagtaggtttta 371  Q
    |||||| | ||||| ||||||||||||||||||| |||||| ||| ||| |||||||||||    
T  18535867 tgatgacaagtcatcttacgttattcttagcatgtttttcagtcaattttagtaggtttta 18535807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 4e-23; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 310 - 407
Target Start/End: Complemental strand, 24480123 - 24480024
Alignment:
Q  310 tatgatgataggtcatattacgttattcttagcatgt-tttcaatcattttcagtaggttttagcaccaataagg-ggagtattataacgattgcctatg 407  Q
    |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||| ||| |||| ||||||||  |||||||| |||||    
T  24480123 tatgatgataggtcatcttacgttattcttagcatgtatttcaatcattttcagtaggttttggcagcaaaaaggaggagtattggaacgattgtctatg 24480024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 313 - 407
Target Start/End: Complemental strand, 24469894 - 24469798
Alignment:
Q  313 gatgataggtcatattacgttattcttagcatgtttt-caatcattttcagtaggttttagcaccaataagg-ggagtattataacgattgcctatg 407  Q
    ||||| ||||||| |||||||||| |||| ||||||| |||||||||||||||||||||  || ||| |||| ||||||||| ||||||||||||||    
T  24469894 gatgacaggtcatcttacgttatttttagtatgtttttcaatcattttcagtaggttttgacagcaaaaaggaggagtattagaacgattgcctatg 24469798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 312 - 407
Target Start/End: Complemental strand, 14641729 - 14641632
Alignment:
Q  312 tgatgataggtcatattacgttattcttagcatg-ttttcaatcattttcagtaggttttagcaccaataagg-ggagtattataacgattgcctatg 407  Q
    |||||| |||| || ||||||||||||||||||| |||||| | |||||||||||||||||||| ||| |||| ||||||||| ||| ||| ||||||    
T  14641729 tgatgacaggttatcttacgttattcttagcatgtttttcagttattttcagtaggttttagcagcaaaaaggaggagtattagaacaattacctatg 14641632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 312 - 406
Target Start/End: Complemental strand, 1636730 - 1636635
Alignment:
Q  312 tgatgataggtcatattacgttattcttagcatg-ttttcaatcattttcagtaggttttagcaccaataaggggagtattataacgattgcctat 406  Q
    |||||| || |||| ||||||||||||||||||| |||||| | ||||| |||||||||||||  ||| |||| |||||||| ||| |||||||||    
T  1636730 tgatgacagatcatcttacgttattcttagcatgtttttcagttatttttagtaggttttagcggcaaaaaggagagtattagaacaattgcctat 1636635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 311 - 371
Target Start/End: Original strand, 22564548 - 22564609
Alignment:
Q  311 atgatgataggtcatattacgttattcttagcatg-ttttcaatcattttcagtaggtttta 371  Q
    |||||| |||||||| ||||||||||||||||||| |||||| ||||||| |||||||||||    
T  22564548 atgatgttaggtcatcttacgttattcttagcatgtttttcagtcatttttagtaggtttta 22564609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 312 - 405
Target Start/End: Complemental strand, 17384120 - 17384025
Alignment:
Q  312 tgatgataggtcatattacgttattcttagcatg-ttttcaatcattttcagtaggttttagcaccaataagg-ggagtattataacgattgccta 405  Q
    |||||| || |||| |||| |||||||||||||| |||||| | ||||||| |||||||||||| ||| |||| ||||||||| || |||||||||    
T  17384120 tgatgacagatcatcttacattattcttagcatgtttttcagttattttcattaggttttagcagcaaaaaggaggagtattacaatgattgccta 17384025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 321 - 407
Target Start/End: Original strand, 17822032 - 17822121
Alignment:
Q  321 gtcatattacgttattcttagcatgttttc--aatcattttcagtaggttttagcaccaataagg-ggagtattataacgattgcctatg 407  Q
    ||||| |||||||||||||||||||||||   | | ||||||| |||| ||||||| ||| |||| ||||||||| ||||||||||||||    
T  17822032 gtcatcttacgttattcttagcatgtttttctagttattttcaataggatttagcagcaaaaaggaggagtattagaacgattgcctatg 17822121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 321 - 370
Target Start/End: Complemental strand, 27961302 - 27961252
Alignment:
Q  321 gtcatattacgttattcttagcatgtttt-caatcattttcagtaggtttt 370  Q
    ||||| |||||||||||||| |||||||| |||||||||||||||||||||    
T  27961302 gtcatcttacgttattcttaacatgtttttcaatcattttcagtaggtttt 27961252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 162 - 239
Target Start/End: Complemental strand, 12876755 - 12876678
Alignment:
Q  162 taacatctcaaaacatcataaggtcataatctcaaaatataggatacattaacatagtgaactcaatggttcctcaaa 239  Q
    ||||||||||||||| ||||| ||||| ||||||||||||  ||||||| | ||  | || |||||||||||||||||    
T  12876755 taacatctcaaaacaacataaagtcatgatctcaaaatatcagatacatcatcaatgagagctcaatggttcctcaaa 12876678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 355 - 407
Target Start/End: Original strand, 19577581 - 19577634
Alignment:
Q  355 attttcagtaggttttagcaccaataagg-ggagtattataacgattgcctatg 407  Q
    |||||||||||||||||||| ||| |||| ||||||||| ||||||||||||||    
T  19577581 attttcagtaggttttagcagcaaaaaggaggagtattagaacgattgcctatg 19577634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 312 - 407
Target Start/End: Original strand, 22404254 - 22404351
Alignment:
Q  312 tgatgataggtcatattacgttattcttagcatgtttt-caatcattttcagtaggttttagcaccaataagg-ggagtattataacgattgcctatg 407  Q
    |||||| | ||||| || ||||||||||| |||||||| || | | |||||||||||||||||| ||| |||| ||||||||| |||||||| |||||    
T  22404254 tgatgacatgtcatctttcgttattcttatcatgtttttcagtaaatttcagtaggttttagcagcaaaaaggaggagtattaaaacgattgtctatg 22404351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 312 - 374
Target Start/End: Complemental strand, 14076493 - 14076430
Alignment:
Q  312 tgatgataggtcatattacgttattcttagcat-gttttcaatcattttcagtaggttttagca 374  Q
    |||||| ||||||| |||||||||||||||||| ||||||| | |||||||||| | |||||||    
T  14076493 tgatgacaggtcatcttacgttattcttagcatggttttcagttattttcagtatgatttagca 14076430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 312 - 392
Target Start/End: Original strand, 8038050 - 8038132
Alignment:
Q  312 tgatgataggtcatattacgttattcttagcatg-ttttcaatcattttcagtaggttttagcaccaataagg-ggagtatta 392  Q
    |||||| ||||||| |||||||||||||||| || ||||||||| |||||| || ||| || || |||||||| |||||||||    
T  8038050 tgatgacaggtcatcttacgttattcttagcctgtttttcaatctttttcactaagttataccagcaataaggaggagtatta 8038132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 327 - 406
Target Start/End: Original strand, 22845866 - 22845947
Alignment:
Q  327 ttacgttattcttagcatg-ttttcaatcattttcagtaggttttagcaccaataagg-ggagtattataacgattgcctat 406  Q
    |||||||| |||||||||| |||||| | |||||||||| |||||| || ||| |||| ||||||||| ||| |||||||||    
T  22845866 ttacgttactcttagcatgtttttcagttattttcagtatgttttaacaacaaaaaggaggagtattagaacaattgcctat 22845947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 331 - 371
Target Start/End: Complemental strand, 8246690 - 8246650
Alignment:
Q  331 gttattcttagcatgttttcaatcattttcagtaggtttta 371  Q
    |||||||||||||| |||||| ||||||| |||||||||||    
T  8246690 gttattcttagcattttttcagtcatttttagtaggtttta 8246650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 312 - 371
Target Start/End: Complemental strand, 14727231 - 14727171
Alignment:
Q  312 tgatgataggtcatattacgttattcttagcatgtttt-caatcattttcagtaggtttta 371  Q
    |||||| ||||||| |||||||||| ||| |||||||| || ||||||| |||||||||||    
T  14727231 tgatgacaggtcatcttacgttattattaccatgtttttcagtcatttttagtaggtttta 14727171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 312 - 371
Target Start/End: Original strand, 21687129 - 21687189
Alignment:
Q  312 tgatgataggtcatattacgttattcttagcatg-ttttcaatcattttcagtaggtttta 371  Q
    |||||| | ||||| ||||||||||||||||||| |||||| ||| ||| |||||||||||    
T  21687129 tgatgacatgtcatcttacgttattcttagcatgtttttcagtcaattttagtaggtttta 21687189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 311 - 407
Target Start/End: Complemental strand, 729234 - 729136
Alignment:
Q  311 atgatgataggtcatattacgttattcttagcatg-ttttcaatcattttcagtaggttttagcaccaataagg-ggagtattataacgattgcctatg 407  Q
    ||||||| ||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||| ||| |||| ||||||||| |||||||| |||||    
T  729234 atgatgaaaggtcatcttacgttattcttagcatgcttttcagtcattttcagtaggttttagcagcaaaaaggaggagtattagaacgattgtctatg 729136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 312 - 407
Target Start/End: Original strand, 21663090 - 21663187
Alignment:
Q  312 tgatgataggtcatattacgttattcttagcatg-ttttcaatcattttcagtaggttttagcaccaataagg-ggagtattataacgattgcctatg 407  Q
    |||||| ||||||| ||||||||||||||||||| |||||| ||||||||||||||||||| || ||| |||| | ||||||| ||||||||||||||    
T  21663090 tgatgacaggtcatcttacgttattcttagcatgtttttcagtcattttcagtaggttttaacatcaaaaaggagaagtattagaacgattgcctatg 21663187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 311 - 407
Target Start/End: Original strand, 15542307 - 15542405
Alignment:
Q  311 atgatgataggtcatattacgttattcttagcatgtttt-caatcattttcagtaggttttagcaccaataag-gggagtattataacgattgcctatg 407  Q
    ||||||| | ||||| |||||||||||||| |||||||| || |||||||||||||||||||||| ||| |||  ||||||||| ||||||||||||||    
T  15542307 atgatgacatgtcatcttacgttattcttaacatgtttttcagtcattttcagtaggttttagcagcaaaaagtaggagtattagaacgattgcctatg 15542405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 86 - 244
Target Start/End: Original strand, 33479398 - 33479554
Alignment:
Q  86 aacttcaaggtgctatgtcatcattaatccaaaacatgcaaaaatcatcaaaatatataaactgtcgcaacgaaattaacatctcaaaacatcataaggt 185  Q
    |||||||||||| ||  ||||| ||||||||||||| | | | ||||||| | || |||||  || ||| || || |||||||||||| |  ||||| ||    
T  33479398 aacttcaaggtgttacttcatctttaatccaaaacacgtatagatcatcata-tacataaatagtagcagcggaaataacatctcaaa-ctccataaagt 33479495  T
Q  186 cataatctcaaaatataggatacattaacatagtgaactcaatggttcctcaaacataa 244  Q
    |||||||||| | | | |||||||||||||||||||||||||| |||||||||||||||    
T  33479496 cataatctcatattttcggatacattaacatagtgaactcaatcgttcctcaaacataa 33479554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 312 - 406
Target Start/End: Complemental strand, 12210362 - 12210266
Alignment:
Q  312 tgatgataggtcatattacgttattcttagcatg-ttttcaatcattttcagtaggttttagcaccaataagg-ggagtattataacgattgcctat 406  Q
    |||||||||||||| |||| |||||||||||||| |||||| ||| |||||||||||||||||| ||| |||| ||||||||| || ||||| ||||    
T  12210362 tgatgataggtcatcttacattattcttagcatgtttttcagtcaatttcagtaggttttagcagcaaaaaggaggagtattagaaagattgtctat 12210266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 309 - 407
Target Start/End: Original strand, 18527493 - 18527593
Alignment:
Q  309 atatgatgataggtcatattacgttattcttagcat-gttttcaatcattttcagtaggttttagcaccaataagg-ggagtattataacgattgcctat 406  Q
    ||||||||| | ||||| ||||||||||||||||||  |||||| ||||||||| |||||||||||  ||| |||| ||||||||| || ||||||||||    
T  18527493 atatgatgacaagtcatcttacgttattcttagcatctttttcactcattttcaataggttttagcggcaaaaaggaggagtattagaatgattgcctat 18527592  T
Q  407 g 407  Q
    |    
T  18527593 g 18527593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 312 - 407
Target Start/End: Complemental strand, 21450864 - 21450767
Alignment:
Q  312 tgatgataggtcatattacgttattcttagcatgttt-tcaatcattttcagtaggttttagcaccaataagg-ggagtattataacgattgcctatg 407  Q
    |||||| ||||||| ||| |||||  ||||||||||| ||| |||||||||||||||||||||| ||| |||| ||||||||  || |||||||||||    
T  21450864 tgatgacaggtcatcttaagttatctttagcatgtttctcagtcattttcagtaggttttagcagcaaaaaggaggagtattggaaagattgcctatg 21450767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 312 - 383
Target Start/End: Complemental strand, 14782627 - 14782555
Alignment:
Q  312 tgatgataggtcatattacgttattcttagcatg-ttttcaatcattttcagtaggttttagcaccaataagg 383  Q
    |||||| ||||||| ||||||||||||||||||| |||||| ||| ||||| |||||||||||| ||| ||||    
T  14782627 tgatgacaggtcatcttacgttattcttagcatgtttttcactcaatttcaataggttttagcagcaaaaagg 14782555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 312 - 392
Target Start/End: Original strand, 15158788 - 15158870
Alignment:
Q  312 tgatgataggtcatattacgttattcttagcatg-ttttcaatcattttcagtaggttttagcaccaataagg-ggagtatta 392  Q
    |||||| |||||| |||||||||||||||||||| |||||| | ||||| |||||| ||||||| ||| |||| |||||||||    
T  15158788 tgatgacaggtcaaattacgttattcttagcatgtttttcagttattttaagtaggatttagcagcaaaaaggaggagtatta 15158870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 327 - 391
Target Start/End: Complemental strand, 27973385 - 27973319
Alignment:
Q  327 ttacgttattcttagcatg-ttttcaatcattttcagtaggttttagcaccaataagg-ggagtatt 391  Q
    ||||||||||||||||||| |||||| ||||||||||||||||||| || ||| |||| ||||||||    
T  27973385 ttacgttattcttagcatgtttttcagtcattttcagtaggttttaacagcaaaaaggaggagtatt 27973319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 312 - 407
Target Start/End: Original strand, 26611331 - 26611428
Alignment:
Q  312 tgatgataggtcatattacgttattcttagcatg-ttttcaatcattttcagtaggttttagcaccaataagg-ggagtattataacgattgcctatg 407  Q
    |||||| ||||||| ||||||||||||||||||| |||||||| | | | |||||| ||||||| ||| |||| ||||||||  || |||||||||||    
T  26611331 tgatgacaggtcatcttacgttattcttagcatgtttttcaattaatattagtaggatttagcagcaaaaaggaggagtattggaatgattgcctatg 26611428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 327 - 407
Target Start/End: Original strand, 22507396 - 22507479
Alignment:
Q  327 ttacgttattcttagcatgttttc--aatcattttcagtaggttttagcaccaataagg-ggagtattataacgattgcctatg 407  Q
    |||||||||||||||||||||||   | | ||||||| |||||||||||  ||| |||| ||||||||| ||||||||||||||    
T  22507396 ttacgttattcttagcatgtttttttagttattttcattaggttttagcggcaaaaaggaggagtattagaacgattgcctatg 22507479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 312 - 371
Target Start/End: Original strand, 26647357 - 26647417
Alignment:
Q  312 tgatgataggtcatattacgttattcttagcat-gttttcaatcattttcagtaggtttta 371  Q
    |||||| ||||||| ||||||||||||||||||  |||||| || ||||||||||||||||    
T  26647357 tgatgacaggtcatcttacgttattcttagcatatttttcagtctttttcagtaggtttta 26647417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 371
Target Start/End: Original strand, 15571687 - 15571748
Alignment:
Q  311 atgatgataggtcatattacgttattcttagcatg-ttttcaatcattttcagtaggtttta 371  Q
    |||||||||| |||| |||||||||| |||||||| |||||| ||| ||| |||||||||||    
T  15571687 atgatgatagatcatcttacgttatttttagcatgtttttcagtcaattttagtaggtttta 15571748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 327 - 371
Target Start/End: Complemental strand, 16114882 - 16114837
Alignment:
Q  327 ttacgttattcttagcatg-ttttcaatcattttcagtaggtttta 371  Q
    ||||||||||||||||||| ||||||||||||||||| | ||||||    
T  16114882 ttacgttattcttagcatgtttttcaatcattttcagcatgtttta 16114837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 312 - 371
Target Start/End: Original strand, 27116223 - 27116283
Alignment:
Q  312 tgatgataggtcatattacgttattcttagcatgtttt-caatcattttcagtaggtttta 371  Q
    |||||| | ||||| ||||||| |||||| |||||||| |||||||||| |||||||||||    
T  27116223 tgatgaaatgtcatcttacgtttttcttaacatgtttttcaatcatttttagtaggtttta 27116283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 312 - 371
Target Start/End: Complemental strand, 33192449 - 33192389
Alignment:
Q  312 tgatgataggtcatattacgttattcttagcatg-ttttcaatcattttcagtaggtttta 371  Q
    |||||| | ||||| ||||| ||||||||||||| |||||| ||| |||||||||||||||    
T  33192449 tgatgacaagtcatcttacgctattcttagcatgtttttcagtcaatttcagtaggtttta 33192389  T

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Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 322 - 407
Target Start/End: Original strand, 8052439 - 8052525
Alignment:
Q  322 tcatattacgttattcttagcatgttttcaatcattttcagtaggttttagcaccaataa-ggggagtattataacgattgcctatg 407  Q
    |||| ||||||||||||||||||||||||| |||||||||||||||||||||| ||| || | ||||||||| || |||||||||||    
T  8052439 tcatcttacgttattcttagcatgttttcagtcattttcagtaggttttagcagcaaaaatgaggagtattagaatgattgcctatg 8052525  T

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Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 311 - 404
Target Start/End: Complemental strand, 4450769 - 4450674
Alignment:
Q  311 atgatgataggtcatattacgttattcttagcatgtttt-caatcattttcagtaggttttagcaccaataagg-ggagtattataacgattgcct 404  Q
    ||||||| || |||| ||||||||||||||||||||||| || |||||||||||||||||||||| ||| | || ||||||||| |||||||||||    
T  4450769 atgatgacagatcatcttacgttattcttagcatgttttccagtcattttcagtaggttttagcaacaaaatggaggagtattagaacgattgcct 4450674  T

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Target: chr7; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 312 - 407
Target Start/End: Original strand, 3585522 - 3585619
Alignment:
Q  312 tgatgataggtcatattacgttattcttagcatgtttt-caatcattttcagtaggttttagcaccaataagg-ggagtattataacgattgcctatg 407  Q
    |||||| | ||||| |||| |||||||||||||||||| ||||||||||||||||||||||||| ||| | || ||||||||| || |||||||||||    
T  3585522 tgatgacaagtcatcttacattattcttagcatgtttttcaatcattttcagtaggttttagcagcaaaatggaggagtattaaaatgattgcctatg 3585619  T

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Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 321 - 407
Target Start/End: Original strand, 8977479 - 8977567
Alignment:
Q  321 gtcatattacgttattcttagcatgtttt-caatcattttcagtaggttttagcaccaataagg-ggagtattataacgattgcctatg 407  Q
    ||||| |||||||||||||||||| |||| ||||||||||||||||||||||||| ||| |||| ||||||||| ||| | ||||||||    
T  8977479 gtcatcttacgttattcttagcatctttttcaatcattttcagtaggttttagcagcaaaaaggaggagtattagaacaactgcctatg 8977567  T

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Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 311 - 407
Target Start/End: Complemental strand, 2566004 - 2565906
Alignment:
Q  311 atgatgataggtcatattacgttattcttagcatg-ttttcaatcattttcagtaggttttagcaccaataagg-ggagtattataacgattgcctatg 407  Q
    ||||||| | ||||| ||||| ||||||||||||| |||||| |||||||||||||||||| |||  || |||| |||||||||||||||||| |||||    
T  2566004 atgatgacaagtcatcttacgatattcttagcatgtttttcagtcattttcagtaggttttggcaagaaaaaggaggagtattataacgattgtctatg 2565906  T

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Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 312 - 407
Target Start/End: Complemental strand, 11804795 - 11804698
Alignment:
Q  312 tgatgataggtcatattacgttattcttagcatgtttt-caatcattttcagtaggttttagcaccaataagg-ggagtattataacgattgcctatg 407  Q
    |||||| || |||| ||||||||||| || |||||||| || |||||||||||||||||||||| ||| |||| | ||||||| ||||||||||||||    
T  11804795 tgatgacagatcatcttacgttattcataacatgtttttcagtcattttcagtaggttttagcagcaaaaaggagcagtattagaacgattgcctatg 11804698  T

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Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 312 - 383
Target Start/End: Original strand, 26249075 - 26249147
Alignment:
Q  312 tgatgataggtcatattacgttattcttagcatg-ttttcaatcattttcagtaggttttagcaccaataagg 383  Q
    |||||| ||||||| ||||||||||| ||||||| |||||| |||||||||||||||||||||| ||| ||||    
T  26249075 tgatgacaggtcatcttacgttattcatagcatgtttttcagtcattttcagtaggttttagcagcaaaaagg 26249147  T

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Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 322 - 407
Target Start/End: Original strand, 18986754 - 18986841
Alignment:
Q  322 tcatattacgttattcttagcatg-ttttcaatcattttcagtaggttttagcaccaataagg-ggagtattataacgattgcctatg 407  Q
    |||| ||||||||||||||||||| |||||| ||| ||||||||| |||||||| ||| |||| ||||||||| ||||| ||||||||    
T  18986754 tcatcttacgttattcttagcatgtttttcagtcaatttcagtagattttagcagcaaaaaggaggagtattagaacgactgcctatg 18986841  T

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Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 322 - 407
Target Start/End: Original strand, 19001382 - 19001469
Alignment:
Q  322 tcatattacgttattcttagcatg-ttttcaatcattttcagtaggttttagcaccaataagg-ggagtattataacgattgcctatg 407  Q
    |||| ||||||||||||||||||| |||||| ||| ||||||||| |||||||| ||| |||| ||||||||| ||||| ||||||||    
T  19001382 tcatcttacgttattcttagcatgtttttcagtcaatttcagtagattttagcagcaaaaaggaggagtattagaacgactgcctatg 19001469  T

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Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 311 - 407
Target Start/End: Complemental strand, 13280857 - 13280759
Alignment:
Q  311 atgatgataggtcatattacgttattcttagcatg-ttttcaatcattttcagtaggttttagcaccaataag-gggagtattataacgattgcctatg 407  Q
    ||||||| | ||||| ||||||||||||||||||| |||||||| | |||||||||||||||||| ||| |||   |||||||| || |||||||||||    
T  13280857 atgatgacatgtcatcttacgttattcttagcatgtttttcaattaatttcagtaggttttagcagcaaaaagaacgagtattagaatgattgcctatg 13280759  T

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Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 127
Target Start/End: Original strand, 13384210 - 13384307
Alignment:
Q  30 taacacccttgaaccccacatataattttaaattgatatttaacaataatttaattaacttcaaggtgctatgtcatcattaatccaaaacatgcaaa 127  Q
    ||||||||||||| |||||||||||| || |||    |||  ||||||| | |||||||||||||||| ||  ||| |||||||||||||||||||||    
T  13384210 taacacccttgaatcccacatataatatttaataataattcgacaataaatcaattaacttcaaggtgttacctcaccattaatccaaaacatgcaaa 13384307  T

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Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 321 - 407
Target Start/End: Original strand, 5236875 - 5236963
Alignment:
Q  321 gtcatattacgttattcttagcatg-ttttcaatcattttcagtaggttttagcaccaataagg-ggagtattataacgattgcctatg 407  Q
    ||||| ||||||||||||||||||| |||||| | |||||||||||||||||||| ||| |||| |||| |||| ||| ||| ||||||    
T  5236875 gtcatcttacgttattcttagcatgtttttcagttattttcagtaggttttagcagcaaaaaggaggaggattagaacaatttcctatg 5236963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 312 - 407
Target Start/End: Original strand, 9078881 - 9078979
Alignment:
Q  312 tgatgataggtcatattacgttattcttagcatg--ttttcaatcattttcagtaggttttagcaccaataagg-ggagtattataacgattgcctatg 407  Q
    |||||| | ||||| |||||||||||||||||||  |||||| | ||||||||||||||| |||| ||| |||| ||||||||  |||||||| |||||    
T  9078881 tgatgacatgtcatcttacgttattcttagcatgttttttcagttattttcagtaggtttcagcagcaaaaaggaggagtattggaacgattgtctatg 9078979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 311 - 371
Target Start/End: Complemental strand, 9767883 - 9767822
Alignment:
Q  311 atgatgataggtcatattacgttattcttagcatg-ttttcaatcattttcagtaggtttta 371  Q
    ||||||| ||||||| | ||||||||||||||||| ||||||  ||||||||||||||||||    
T  9767883 atgatgacaggtcatctcacgttattcttagcatgtttttcagccattttcagtaggtttta 9767822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 312 - 407
Target Start/End: Complemental strand, 19201555 - 19201458
Alignment:
Q  312 tgatgataggtcatattacgttattcttagcatgtttt-caatcattttcagtaggttttagcaccaataagg-ggagtattataacgattgcctatg 407  Q
    |||||| ||||||| ||| |||||||||| |||||||| |  | |||||||||||| ||||||| ||| |||| ||| ||||| ||||||||||||||    
T  19201555 tgatgacaggtcatcttatgttattcttaacatgtttttctgttattttcagtaggatttagcagcaaaaaggtggactattagaacgattgcctatg 19201458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 312 - 371
Target Start/End: Complemental strand, 10332501 - 10332441
Alignment:
Q  312 tgatgataggtcatattacgttattcttagcatg-ttttcaatcattttcagtaggtttta 371  Q
    |||||| | ||||| ||||||||||||||||||| |||||| |||||||||||| ||||||    
T  10332501 tgatgacatgtcatcttacgttattcttagcatgtttttcagtcattttcagtatgtttta 10332441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 330 - 407
Target Start/End: Complemental strand, 10611792 - 10611713
Alignment:
Q  330 cgttattcttagcatgttt-tcaatcattttcagtaggttttagcaccaataaggg-gagtattataacgattgcctatg 407  Q
    ||||||||||||||||||| ||| | ||||| | |||||||||||| ||| ||||  |||||||| ||||||||||||||    
T  10611792 cgttattcttagcatgtttctcagtgattttaaataggttttagcagcaaaaaggatgagtattagaacgattgcctatg 10611713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 321 - 371
Target Start/End: Original strand, 21707346 - 21707397
Alignment:
Q  321 gtcatattacgttattcttagcatgtttt-caatcattttcagtaggtttta 371  Q
    ||||| |||||||||||||||||| |||| |||||||||| |||||||||||    
T  21707346 gtcatcttacgttattcttagcatatttttcaatcatttttagtaggtttta 21707397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 311 - 349
Target Start/End: Complemental strand, 3736434 - 3736396
Alignment:
Q  311 atgatgataggtcatattacgttattcttagcatgtttt 349  Q
    ||||| ||||||||| |||||||||||||||||||||||    
T  3736434 atgattataggtcatcttacgttattcttagcatgtttt 3736396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 322 - 371
Target Start/End: Complemental strand, 9722528 - 9722478
Alignment:
Q  322 tcatattacgttattcttagcatgtttt-caatcattttcagtaggtttta 371  Q
    |||| |||||||||| |||||||||||| |||||||||||||||| |||||    
T  9722528 tcatcttacgttattattagcatgtttttcaatcattttcagtagatttta 9722478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 349
Target Start/End: Complemental strand, 2927971 - 2927934
Alignment:
Q  312 tgatgataggtcatattacgttattcttagcatgtttt 349  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  2927971 tgatgacaggtcatcttacgttattcttagcatgtttt 2927934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 239
Target Start/End: Original strand, 11484583 - 11484663
Alignment:
Q  158 aaattaacatctcaaaacatcataaggtcataatctcaaaatataggatacattaacatagtgaactcaatggttcctcaaa 239  Q
    |||| |||||||| ||  ||||||| ||||||||||| |||| |  ||||||| | |||||||||| |||||||||||||||    
T  11484583 aaataaacatctctaagtatcataaagtcataatctccaaatctcagatacatca-catagtgaacccaatggttcctcaaa 11484663  T

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Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 349
Target Start/End: Complemental strand, 19154915 - 19154878
Alignment:
Q  312 tgatgataggtcatattacgttattcttagcatgtttt 349  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  19154915 tgatgacaggtcatcttacgttattcttagcatgtttt 19154878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 349
Target Start/End: Complemental strand, 20754314 - 20754277
Alignment:
Q  312 tgatgataggtcatattacgttattcttagcatgtttt 349  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  20754314 tgatgacaggtcatcttacgttattcttagcatgtttt 20754277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 407
Target Start/End: Original strand, 23173685 - 23173782
Alignment:
Q  312 tgatgataggtcatattacgttattcttagcatg-ttttcaatcattttcagtaggttttagcaccaataagg-ggagtattataacgattgcctatg 407  Q
    |||||| | ||||| ||||||||||||||||||| |||||| | ||||| | |||||||||||  ||| |||| ||||||||| ||| |||| |||||    
T  23173685 tgatgacatgtcatcttacgttattcttagcatgtttttcagttatttttaataggttttagctgcaaaaaggaggagtattagaacaattgtctatg 23173782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 331 - 371
Target Start/End: Complemental strand, 145053 - 145013
Alignment:
Q  331 gttattcttagcatgttttcaatcattttcagtaggtttta 371  Q
    |||||||||| |||||||||| ||||||| |||||||||||    
T  145053 gttattcttaacatgttttcagtcatttttagtaggtttta 145013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 309 - 349
Target Start/End: Original strand, 4900336 - 4900376
Alignment:
Q  309 atatgatgataggtcatattacgttattcttagcatgtttt 349  Q
    |||||||||| |||||| |||||||||||||||||| ||||    
T  4900336 atatgatgatcggtcatcttacgttattcttagcatatttt 4900376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 311 - 371
Target Start/End: Complemental strand, 7399425 - 7399365
Alignment:
Q  311 atgatgataggtcatattacgttattcttagcatgttttcaatcattttcagtaggtttta 371  Q
    ||||||| | ||||| |||||||||||||| |||||||||| || |||| |||||| ||||    
T  7399425 atgatgacatgtcatcttacgttattcttaacatgttttcagtcgtttttagtagggttta 7399365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 93 - 194
Target Start/End: Original strand, 59892 - 59991
Alignment:
Q  93 aggtgctatgtcatcattaatccaaaacatgcaaaaatcatcaaaatatataaactgtcgcaacgaaattaacatctcaaaacatcataaggtcataatc 192  Q
    ||||| || ||||||||||||| |||||||||| ||||||||| || |||||||| ||||||||| || ||||||||| ||||||||||| |||||||||    
T  59892 aggtgatacgtcatcattaatctaaaacatgcataaatcatcataa-atataaacagtcgcaacggaaataacatctc-aaacatcataaagtcataatc 59989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 312 - 407
Target Start/End: Complemental strand, 4921 - 4824
Alignment:
Q  312 tgatgataggtcatattacgttattcttagcatgtttt-caatcattttcagtaggttttagcaccaataagg-ggagtattataacgattgcctatg 407  Q
    |||||||||||| | ||| ||||||| ||||||||||| || |||||||||||||||||||||| ||| |||| ||||||||| ||||||||||||||    
T  4921 tgatgataggtcgtcttatgttattcgtagcatgtttttcagtcattttcagtaggttttagcagcaaaaaggaggagtattagaacgattgcctatg 4824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 316 - 407
Target Start/End: Original strand, 15176436 - 15176529
Alignment:
Q  316 gataggtcatattacgttattcttagcatgt-tttcaatcattttcagtaggttttagcaccaataagg-ggagtattataacgattgcctatg 407  Q
    |||||||||| |||| ||||||||||||||| ||||| ||| |||||||||||||||||| ||| |||| ||||||||| ||||||||||||||    
T  15176436 gataggtcatcttacattattcttagcatgtgtttcagtcaatttcagtaggttttagcagcaaaaaggaggagtattagaacgattgcctatg 15176529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 312 - 407
Target Start/End: Complemental strand, 17511001 - 17510904
Alignment:
Q  312 tgatgataggtcatattacgttattcttagcatg-ttttcaatcattttcagtaggttttagcaccaataagg-ggagtattataacgattgcctatg 407  Q
    |||||||||||||| |||| |||||||||||||| |||||| ||| |||||||||||||||||  ||| |||| ||||||||| ||||||||||||||    
T  17511001 tgatgataggtcatcttacattattcttagcatgtttttcagtcactttcagtaggttttagctgcaaaaaggaggagtattagaacgattgcctatg 17510904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 312 - 407
Target Start/End: Complemental strand, 20400431 - 20400334
Alignment:
Q  312 tgatgataggtcatattacgttattcttagcatg-ttttcaatcattttcagtaggttttagcaccaataagg-ggagtattataacgattgcctatg 407  Q
    |||||| ||||||| ||||||||||||||||||| |||||| ||||||||||| |||||||||| ||| |||| ||||||||| ||||||| ||||||    
T  20400431 tgatgacaggtcatcttacgttattcttagcatgcttttcagtcattttcagtgggttttagcagcaaaaaggaggagtattagaacgatttcctatg 20400334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 309 - 407
Target Start/End: Original strand, 24583168 - 24583268
Alignment:
Q  309 atatgatgataggtcatattacgttattcttagcatg-ttttcaatcattttcagtaggttttagcaccaataagg-ggagtattataacgattgcctat 406  Q
    |||| |||| ||||||| ||| ||||||||||||||| |||||| ||||||| ||||| |||||||| ||| |||| ||||||||| |||||||||||||    
T  24583168 atataatgacaggtcattttatgttattcttagcatgtttttcagtcatttttagtagattttagcagcaaaaaggaggagtattagaacgattgcctat 24583267  T
Q  407 g 407  Q
    |    
T  24583268 g 24583268  T

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Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 327 - 407
Target Start/End: Original strand, 13313286 - 13313368
Alignment:
Q  327 ttacgttattcttagcatg-ttttcaatcattttcagtaggttttagcaccaataagg-ggagtattataacgattgcctatg 407  Q
    ||||||||||||||||||| |||||| ||||||||| |||||||||||| ||| |||| ||||||||| ||| ||||||||||    
T  13313286 ttacgttattcttagcatgtttttcagtcattttcaataggttttagcagcaaaaaggaggagtattagaacaattgcctatg 13313368  T

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Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 312 - 407
Target Start/End: Original strand, 29380960 - 29381058
Alignment:
Q  312 tgatgataggtcatattacgttattcttagcatg--ttttcaatcattttcagtaggttttagcaccaataagg-ggagtattataacgattgcctatg 407  Q
    |||||| ||||||| |||||||||||||||||||  |||| | ||| ||||| |||||||||| | ||| |||| ||||||||| ||||||||||||||    
T  29380960 tgatgacaggtcatcttacgttattcttagcatgtttttttattcaatttcaataggttttagtagcaaaaaggaggagtattagaacgattgcctatg 29381058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 312 - 407
Target Start/End: Original strand, 29765391 - 29765489
Alignment:
Q  312 tgatgataggtcatattacgttattcttagcatgttttc--aatcattttcagtaggttttagcaccaataagg-ggagtattataacgattgcctatg 407  Q
    |||||| ||||||| |||||||||||||||||||||||   | | |||||||||||||||||||| ||| ||||  | |||||| ||||||||||||||    
T  29765391 tgatgacaggtcatcttacgttattcttagcatgtttttttagttattttcagtaggttttagcagcaaaaaggaagtgtattagaacgattgcctatg 29765489  T

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Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 312 - 407
Target Start/End: Complemental strand, 19705083 - 19704986
Alignment:
Q  312 tgatgataggtcatattacgttattcttagcatgtttt-caatcattttcagtaggttttagcaccaataag-gggagtattataacgattgcctatg 407  Q
    |||||| | ||||| ||||||||||||||| ||||||| || ||||||||||||||||||| || ||  |||  ||||||||| ||||||||||||||    
T  19705083 tgatgacatgtcatcttacgttattcttagtatgtttttcagtcattttcagtaggttttaacagcataaagaaggagtattagaacgattgcctatg 19704986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 312 - 371
Target Start/End: Complemental strand, 14271938 - 14271878
Alignment:
Q  312 tgatgataggtcatattacgttattcttagcatg-ttttcaatcattttcagtaggtttta 371  Q
    |||||| ||||||| ||||||||||||||||||| ||||||| | ||||||||||||||||    
T  14271938 tgatgacaggtcatcttacgttattcttagcatgtttttcaacctttttcagtaggtttta 14271878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 314 - 372
Target Start/End: Original strand, 24381988 - 24382047
Alignment:
Q  314 atgataggtcatattacgttattcttagcatgt-tttcaatcattttcagtaggttttag 372  Q
    |||||||||||| || ||||||||||||||||| ||| | ||||||||||||||||||||    
T  24381988 atgataggtcatctttcgttattcttagcatgtattttagtcattttcagtaggttttag 24382047  T

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Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 312 - 371
Target Start/End: Complemental strand, 28858932 - 28858873
Alignment:
Q  312 tgatgataggtcatattacgttattcttagcatgttttcaatcattttcagtaggtttta 371  Q
    |||||| ||| ||| |||| |||||||||||||||||||| ||||||| |||||||||||    
T  28858932 tgatgacaggccatcttacattattcttagcatgttttcagtcatttttagtaggtttta 28858873  T

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Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 312 - 407
Target Start/End: Original strand, 18446859 - 18446956
Alignment:
Q  312 tgatgataggtcatattacgttattcttagcatg-ttttcaatcattttcagtaggttttagcaccaataagg-ggagtattataacgattgcctatg 407  Q
    |||||||||||||| |||||||||| ||| |||| |||||| | |||| ||||||| ||||||| ||| |||| ||||||||| ||| ||| ||||||    
T  18446859 tgatgataggtcatcttacgttatttttaccatgtttttcagttatttccagtaggatttagcagcaaaaaggaggagtattagaaccatttcctatg 18446956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 312 - 407
Target Start/End: Original strand, 23867829 - 23867926
Alignment:
Q  312 tgatgataggtcatattacgttattcttagcatgtttt-caatcattttcagtaggttttagcaccaataagg-ggagtattataacgattgcctatg 407  Q
    |||||| ||||||| |||||| |||||||| ||||||| ||  |||||| |||||||||||||| |||  | | ||||||||| ||||||||||||||    
T  23867829 tgatgacaggtcatcttacgtaattcttagtatgtttttcaggcatttttagtaggttttagcagcaaagacgaggagtattagaacgattgcctatg 23867926  T

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Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 311 - 406
Target Start/End: Complemental strand, 24389854 - 24389757
Alignment:
Q  311 atgatgataggtcatattacgttattcttagcatg-ttttcaatcattttcagtaggttttagcaccaataa-ggggagtattataacgattgcctat 406  Q
    ||||||| ||||||| ||||||||||||||| | | |||| | | |||||||||||||||||||| ||| || | ||||||||| ||| |||||||||    
T  24389854 atgatgacaggtcatcttacgttattcttagtaagttttttagttattttcagtaggttttagcaacaaaaatgaggagtattagaacaattgcctat 24389757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 312 - 407
Target Start/End: Complemental strand, 26139885 - 26139788
Alignment:
Q  312 tgatgataggtcatattacgttattcttagcatgtttt-caatcattttcagtaggttttagcaccaataagg-ggagtattataacgattgcctatg 407  Q
    |||||| ||||||| ||||||||||||||||||||||| ||||   ||| ||||||   ||||| ||| |||| ||||||||| ||||||||||||||    
T  26139885 tgatgaaaggtcatcttacgttattcttagcatgtttttcaatttattttagtaggaaatagcatcaaaaaggaggagtattagaacgattgcctatg 26139788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 312 - 407
Target Start/End: Complemental strand, 28621701 - 28621604
Alignment:
Q  312 tgatgataggtcatattacgttattcttagcatg-ttttcaatcattttcagtaggttttagcaccaataag-gggagtattataacgattgcctatg 407  Q
    |||||| ||||||| | ||||||||||||||||| |||||| | ||||||| ||||||||||||  || |||   |||||||| ||||||||||||||    
T  28621701 tgatgacaggtcatctaacgttattcttagcatgtttttcagttattttcattaggttttagcataaaaaagaatgagtattagaacgattgcctatg 28621604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 312 - 371
Target Start/End: Complemental strand, 6286379 - 6286319
Alignment:
Q  312 tgatgataggtcatattacgttattcttagcatgt-tttcaatcattttcagtaggtttta 371  Q
    |||||| ||||||| |||||||||||||||||||| |||| |||| ||| |||||||||||    
T  6286379 tgatgacaggtcatcttacgttattcttagcatgtctttctatcaattttagtaggtttta 6286319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 327 - 371
Target Start/End: Complemental strand, 18007617 - 18007573
Alignment:
Q  327 ttacgttattcttagcatgttttcaatcattttcagtaggtttta 371  Q
    |||||||||| ||||||| |||||| |||||||||||||||||||    
T  18007617 ttacgttattgttagcattttttcagtcattttcagtaggtttta 18007573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 321 - 407
Target Start/End: Original strand, 24380362 - 24380450
Alignment:
Q  321 gtcatattacgttattcttagcatg-ttttcaatcattttcagtaggttttagcacca-ataaggggagtattataacgattgcctatg 407  Q
    ||||| ||||||||||||||||||| |||||| ||| ||||||||||||||| || || |  || ||||||||| ||| ||||||||||    
T  24380362 gtcatcttacgttattcttagcatgtttttcactcaatttcagtaggttttaccagcagaacagaggagtattagaacaattgcctatg 24380450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 312 - 371
Target Start/End: Complemental strand, 24909001 - 24908941
Alignment:
Q  312 tgatgataggtcatattacgttattcttagcatg-ttttcaatcattttcagtaggtttta 371  Q
    |||||| |||||| ||||||||||| |||||||| |||||||||| ||||| |||||||||    
T  24909001 tgatgacaggtcaaattacgttatttttagcatgtttttcaatcaatttcaataggtttta 24908941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 312 - 371
Target Start/End: Complemental strand, 24911222 - 24911162
Alignment:
Q  312 tgatgataggtcatattacgttattcttagcatg-ttttcaatcattttcagtaggtttta 371  Q
    |||||| |||||| ||||||||||| |||||||| |||||||||| ||||| |||||||||    
T  24911222 tgatgacaggtcaaattacgttatttttagcatgtttttcaatcaatttcaataggtttta 24911162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 312 - 370
Target Start/End: Original strand, 21695413 - 21695472
Alignment:
Q  312 tgatgataggtcatattacgttattcttagcatg-ttttcaatcattttcagtaggtttt 370  Q
    |||||| | ||||| ||||||||||||||||||| |||||| ||| ||||||||||||||    
T  21695413 tgatgacatgtcatcttacgttattcttagcatgtttttcagtcaatttcagtaggtttt 21695472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 309 - 371
Target Start/End: Original strand, 30117655 - 30117718
Alignment:
Q  309 atatgatgataggtcatattacgttattcttagcatgtttt-caatcattttcagtaggtttta 371  Q
    ||||| ||| |||| || |||||||||| |||||||||||| || |||||||||||||||||||    
T  30117655 atatggtgacaggttatcttacgttatttttagcatgtttttcattcattttcagtaggtttta 30117718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 311 - 349
Target Start/End: Complemental strand, 19265920 - 19265882
Alignment:
Q  311 atgatgataggtcatattacgttattcttagcatgtttt 349  Q
    ||||||| ||||||| |||||||||||||||||||||||    
T  19265920 atgatgacaggtcatcttacgttattcttagcatgtttt 19265882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 407
Target Start/End: Original strand, 24090893 - 24090975
Alignment:
Q  327 ttacgttattcttagcatg-ttttcaatcattttcagtaggttttagcaccaataagg-ggagtattataacgattgcctatg 407  Q
    ||||||||||||||||||| |||||| | ||||| | |||||||||||| ||| ||||  |||||||| ||| ||||||||||    
T  24090893 ttacgttattcttagcatgtttttcagttattttaattaggttttagcagcaaaaaggaagagtattagaacaattgcctatg 24090975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 349
Target Start/End: Complemental strand, 21316880 - 21316843
Alignment:
Q  312 tgatgataggtcatattacgttattcttagcatgtttt 349  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  21316880 tgatgacaggtcatcttacgttattcttagcatgtttt 21316843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 407
Target Start/End: Complemental strand, 26888583 - 26888486
Alignment:
Q  312 tgatgataggtcatattacgttattcttagcatgtttt-caatcattttcagtaggttttagcaccaataagg-ggagtattataacgattgcctatg 407  Q
    |||||| || |||| |||||||||| ||||||| |||| || | ||||| |||||||||||||| ||| |||| ||||||||  |||||||| |||||    
T  26888583 tgatgacagatcattttacgttatttttagcatatttttcatttatttttagtaggttttagcaacaaaaaggaggagtattggaacgattgtctatg 26888486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 327 - 371
Target Start/End: Original strand, 28903982 - 28904027
Alignment:
Q  327 ttacgttattcttagcatgttt-tcaatcattttcagtaggtttta 371  Q
    ||||||||||||||| |||||  |||||||||||||||||||||||    
T  28903982 ttacgttattcttagtatgttcatcaatcattttcagtaggtttta 28904027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 312 - 383
Target Start/End: Original strand, 17100206 - 17100278
Alignment:
Q  312 tgatgataggtcatattacgttattcttagcatg-ttttcaatcattttcagtaggttttagcaccaataagg 383  Q
    |||||| ||||||| | | ||||||||||||||| |||||||| |||||||  ||||||||||| ||| ||||    
T  17100206 tgatgacaggtcatctcaagttattcttagcatgtttttcaattattttcataaggttttagcagcaaaaagg 17100278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 311 - 371
Target Start/End: Original strand, 24518587 - 24518647
Alignment:
Q  311 atgatgataggtcatattacgttattcttagcatgttttcaatcattttcagtaggtttta 371  Q
    ||||||| | ||||| | ||||||||||||| ||||||| | | |||||||||||||||||    
T  24518587 atgatgacatgtcatctaacgttattcttagtatgtttttagttattttcagtaggtttta 24518647  T

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Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 312 - 407
Target Start/End: Original strand, 23387547 - 23387644
Alignment:
Q  312 tgatgataggtcatattacgttattcttagcatgtttt-caatcattttcagtaggttttagcaccaataagg-ggagtattataacgattgcctatg 407  Q
    |||||||||||| | ||| ||||||| ||||||||||| || |||||||||||||||||||||| ||| |||| ||||||||| ||||||||||||||    
T  23387547 tgatgataggtcgtcttatgttattcgtagcatgtttttcagtcattttcagtaggttttagcagcaaaaaggaggagtattagaacgattgcctatg 23387644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 92 - 251
Target Start/End: Original strand, 27269335 - 27269494
Alignment:
Q  92 aaggtgctatgtcatcattaatccaaaacatgcaaaaatcatcaaaatatataaactgtcgcaacgaaattaacatctcaaaacatcataaggtcataat 191  Q
    |||||||||  ||||||||||||||||||| ||| | || |||| | || |||||| |||| || | || |||||||||||||  ||||||   ||||||    
T  27269335 aaggtgctacttcatcattaatccaaaacaagcacatattatcata-tacataaacagtcgaaaaggaaataacatctcaaaatctcataaaaacataat 27269433  T
Q  192 ctcaaaa-tataggatacattaacatagtgaactcaatggttcctcaaacataatccgaaa 251  Q
    ||||||| | |  ||||||| ||  |||||||||||||||||||||||||||||| |||||    
T  27269434 ctcaaaaatctcagatacatcaatgtagtgaactcaatggttcctcaaacataattcgaaa 27269494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 311 - 374
Target Start/End: Complemental strand, 23338989 - 23338925
Alignment:
Q  311 atgatgataggtcatattacgttattcttagcatg-ttttcaatcattttcagtaggttttagca 374  Q
    ||||||| ||||||| ||| ||||||||||||||| |||||||||||||||| ||||||||||||    
T  23338989 atgatgacaggtcatcttaggttattcttagcatgtttttcaatcattttcattaggttttagca 23338925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 312 - 374
Target Start/End: Original strand, 25400738 - 25400801
Alignment:
Q  312 tgatgataggtcatattacgttattcttagcatg-ttttcaatcattttcagtaggttttagca 374  Q
    |||||| ||||||| ||||||||||||||||||| |||||| ||||||||| ||||||||||||    
T  25400738 tgatgagaggtcattttacgttattcttagcatgtttttcagtcattttcattaggttttagca 25400801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 312 - 407
Target Start/End: Complemental strand, 20860436 - 20860339
Alignment:
Q  312 tgatgataggtcatattacgttattcttagcatgtttt-caatcattttcagtaggttttagcaccaataagg-ggagtattataacgattgcctatg 407  Q
    |||||| ||||||| |||||||| | |||||||||||| || | |||||||||||||||||||| ||| |||| | ||||||| ||| ||||||||||    
T  20860436 tgatgacaggtcatcttacgttactgttagcatgtttttcattaattttcagtaggttttagcagcaaaaaggagaagtattagaacaattgcctatg 20860339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 313 - 405
Target Start/End: Original strand, 24320522 - 24320617
Alignment:
Q  313 gatgataggtcatattacgttattcttagcatg--ttttcaatcattttcagtaggttttagcaccaataagg-ggagtattataacgattgccta 405  Q
    ||||| ||||||| |||||||||||||| ||||  |||| | |||||||||||||||||||||| ||| |||| |||||||||  |||||| ||||    
T  24320522 gatgacaggtcatcttacgttattcttaacatgtttttttattcattttcagtaggttttagcagcaaaaaggcggagtattagcacgatttccta 24320617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 71 - 127
Target Start/End: Original strand, 32554860 - 32554916
Alignment:
Q  71 aacaataatttaattaacttcaaggtgctatgtcatcattaatccaaaacatgcaaa 127  Q
    |||||||| | |||||||||||||||| || |||||||||||| |||||||||||||    
T  32554860 aacaataagtcaattaacttcaaggtgttacgtcatcattaatgcaaaacatgcaaa 32554916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 312 - 407
Target Start/End: Complemental strand, 29988054 - 29987956
Alignment:
Q  312 tgatgataggtcatattacgttattcttagcatg-ttttcaatcattttcagtaggttttagcaccaataa--ggggagtattataacgattgcctatg 407  Q
    |||||| ||||||| |||||||||| |||||||| |||||| ||||||| ||||| |||||||| ||| ||  | ||||||||| ||||||||| ||||    
T  29988054 tgatgacaggtcatcttacgttatttttagcatgtttttcagtcatttttagtagattttagcagcaaaaaaggtggagtattagaacgattgcatatg 29987956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 327 - 407
Target Start/End: Original strand, 17469573 - 17469655
Alignment:
Q  327 ttacgttattcttagcatg-ttttcaatcattttcagtaggttttagcaccaata-aggggagtattataacgattgcctatg 407  Q
    ||||||||||||||||||| ||||||||||||||||| |||||||| || ||| | || ||||||||| | | ||||||||||    
T  17469573 ttacgttattcttagcatgtttttcaatcattttcagcaggttttaccagcaaaacagaggagtattagagcaattgcctatg 17469655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 312 - 369
Target Start/End: Original strand, 19761581 - 19761639
Alignment:
Q  312 tgatgataggtcatattacgttattcttagcatgtt-ttcaatcattttcagtaggttt 369  Q
    |||||| ||||||| |||||||||| |||||||||| |||| |||||||||||||||||    
T  19761581 tgatgacaggtcatcttacgttattattagcatgttattcagtcattttcagtaggttt 19761639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 312 - 406
Target Start/End: Complemental strand, 19053198 - 19053102
Alignment:
Q  312 tgatgataggtcatattacgttattcttagcatgttt-tcaatcattttcagtaggttttagcaccaataagg-ggagtattataacgattgcctat 406  Q
    |||||| | ||||| |||||||||||||||||||||| ||| | ||||||||||| ||||  || ||| |||| ||||||||| ||| |||||||||    
T  19053198 tgatgacatgtcattttacgttattcttagcatgtttatcagttattttcagtagatttttacagcaaaaaggaggagtattagaacaattgcctat 19053102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 314 - 349
Target Start/End: Original strand, 24263752 - 24263787
Alignment:
Q  314 atgataggtcatattacgttattcttagcatgtttt 349  Q
    |||||||||||| |||||||||||||||||||||||    
T  24263752 atgataggtcatcttacgttattcttagcatgtttt 24263787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 322 - 407
Target Start/End: Complemental strand, 28666579 - 28666492
Alignment:
Q  322 tcatattacgttattcttagcatgtttt-caatcattttcagtaggttttagcaccaataagg-ggagtattataacgattgcctatg 407  Q
    |||| ||| |||||||||| |||||||| || |||||||||||||||||||||| ||| |||| | ||||||| || || ||||||||    
T  28666579 tcatcttatgttattcttatcatgtttttcattcattttcagtaggttttagcagcaaaaaggagaagtattagaatgactgcctatg 28666492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 407
Target Start/End: Original strand, 19003780 - 19003862
Alignment:
Q  327 ttacgttattcttagcatgtttt-caatcattttcagtaggttttagcaccaataagg-ggagtattataacgattgcctatg 407  Q
    ||||||||||||| ||||||||| || | |||||||||||||||||||| ||| ||||  |||||||| ||| |||| |||||    
T  19003780 ttacgttattcttggcatgtttttcagttattttcagtaggttttagcagcaaaaaggatgagtattagaacaattgtctatg 19003862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 349
Target Start/End: Original strand, 23214825 - 23214862
Alignment:
Q  312 tgatgataggtcatattacgttattcttagcatgtttt 349  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  23214825 tgatgacaggtcatcttacgttattcttagcatgtttt 23214862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 319 - 371
Target Start/End: Original strand, 24162018 - 24162071
Alignment:
Q  319 aggtcatattacgttattcttagcatg-ttttcaatcattttcagtaggtttta 371  Q
    ||||||| ||||||||||||||||||| |||||| ||||||||| ||| |||||    
T  24162018 aggtcattttacgttattcttagcatgtttttcagtcattttcaatagatttta 24162071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 319 - 371
Target Start/End: Complemental strand, 34488947 - 34488894
Alignment:
Q  319 aggtcatattacgttattcttagcatg-ttttcaatcattttcagtaggtttta 371  Q
    ||||||| ||||||||||||||||||| |||||| ||||||| |||||| ||||    
T  34488947 aggtcatcttacgttattcttagcatgtttttcagtcatttttagtaggattta 34488894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 321 - 372
Target Start/End: Complemental strand, 15691356 - 15691304
Alignment:
Q  321 gtcatattacgttattcttagcat-gttttcaatcattttcagtaggttttag 372  Q
    ||||| ||||||||||||||||||  |||| | ||||||||||||||||||||    
T  15691356 gtcatcttacgttattcttagcatattttttagtcattttcagtaggttttag 15691304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 328 - 371
Target Start/End: Original strand, 25572494 - 25572538
Alignment:
Q  328 tacgttattcttagcatg-ttttcaatcattttcagtaggtttta 371  Q
    |||||||||||||||||| |||||| ||| |||||||||||||||    
T  25572494 tacgttattcttagcatgtttttcagtcaatttcagtaggtttta 25572538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 312 - 371
Target Start/End: Original strand, 31600075 - 31600135
Alignment:
Q  312 tgatgataggtcatattacgttattcttagcatgttttcaa-tcattttcagtaggtttta 371  Q
    |||||| ||||| | ||||||||||||||||||||||| || || ||||| ||||||||||    
T  31600075 tgatgacaggtcctcttacgttattcttagcatgtttttaagtctttttccgtaggtttta 31600135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 321 - 407
Target Start/End: Complemental strand, 34132174 - 34132086
Alignment:
Q  321 gtcatattacgttattcttagcatg-ttttcaatcattttcagtaggttttagcaccaataagg-ggagtattataacgattgcctatg 407  Q
    ||||| |||| |||||||||||||| ||||||   ||||||| |||||||||||| ||| |||| | ||||||| ||||| ||||||||    
T  34132174 gtcatcttactttattcttagcatgtttttcagctattttcattaggttttagcagcaaaaaggagaagtattagaacgactgcctatg 34132086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 6e-16; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 322 - 407
Target Start/End: Complemental strand, 28918275 - 28918188
Alignment:
Q  322 tcatattacgttattcttagcatgtttt-caatcattttcagtaggttttagcaccaataagg-ggagtattataacgattgcctatg 407  Q
    |||| ||||||||||||||||||||||| || |||||||||||||||||||||  ||| |||| ||||||||| ||| ||||||||||    
T  28918275 tcattttacgttattcttagcatgtttttcagtcattttcagtaggttttagctacaaaaaggaggagtattagaacaattgcctatg 28918188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 312 - 407
Target Start/End: Original strand, 27907522 - 27907619
Alignment:
Q  312 tgatgataggtcatattacgttattcttagcatg-ttttcaatcattttcagtaggttttagcaccaataagg-ggagtattataacgattgcctatg 407  Q
    |||||||||||||  |||| |||||||||||||| |||||| |||||||||||| ||||||||| ||| |||| | ||||||| ||| ||||||||||    
T  27907522 tgatgataggtcaccttacattattcttagcatgtttttcagtcattttcagtaagttttagcaacaaaaaggagaagtattaaaactattgcctatg 27907619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 327 - 407
Target Start/End: Complemental strand, 18758383 - 18758301
Alignment:
Q  327 ttacgttattcttagcatgttttc-aatcattttcagtaggttttagcaccaataagg-ggagtattataacgattgcctatg 407  Q
    |||||||||| ||||||||||||  ||| |||||||||||||||||| | ||| |||| ||||||||| ||||||||||||||    
T  18758383 ttacgttatttttagcatgttttttaattattttcagtaggttttagtagcaaaaaggaggagtattagaacgattgcctatg 18758301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 312 - 371
Target Start/End: Original strand, 35680100 - 35680160
Alignment:
Q  312 tgatgataggtcatattacgttattcttagcatgttttcaa-tcattttcagtaggtttta 371  Q
    |||||| ||| ||| ||||||||||||||||||||||| || |||||||||||||||||||    
T  35680100 tgatgacaggccatcttacgttattcttagcatgtttttaagtcattttcagtaggtttta 35680160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 312 - 370
Target Start/End: Original strand, 16157084 - 16157143
Alignment:
Q  312 tgatgataggtcatattacgttattcttagcatg-ttttcaatcattttcagtaggtttt 370  Q
    |||||| ||||||| |||| |||||||||||||| |||||| ||||||||||||||||||    
T  16157084 tgatgacaggtcatcttacattattcttagcatgtttttcagtcattttcagtaggtttt 16157143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 321 - 374
Target Start/End: Original strand, 27540274 - 27540328
Alignment:
Q  321 gtcatattacgttattcttagcatgtttt-caatcattttcagtaggttttagca 374  Q
    |||||||||||||| ||||||||| |||| || ||||||||||||||||||||||    
T  27540274 gtcatattacgttactcttagcatatttttcagtcattttcagtaggttttagca 27540328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 311 - 406
Target Start/End: Complemental strand, 26313276 - 26313179
Alignment:
Q  311 atgatgataggtcatattacgttattcttagcatg-ttttcaatcattttcagtaggttttagcaccaataag-gggagtattataacgattgcctat 406  Q
    ||||||| | ||||| |||| |||||||||||||| |||| ||||| |||||||||||||||||| ||| |||   |||||||| |||||| ||||||    
T  26313276 atgatgacaagtcatcttacattattcttagcatgttttttaatcaatttcagtaggttttagcagcaaaaagaatgagtattagaacgatcgcctat 26313179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 312 - 371
Target Start/End: Complemental strand, 17891828 - 17891768
Alignment:
Q  312 tgatgataggtcatattacgttattcttagcatgtttt-caatcattttcagtaggtttta 371  Q
    |||||| | ||||| |||||||||||||| |||||||| || |||||||||||||||||||    
T  17891828 tgatgacatgtcatcttacgttattcttaacatgtttttcagtcattttcagtaggtttta 17891768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 306 - 407
Target Start/End: Complemental strand, 17351081 - 17350978
Alignment:
Q  306 agaatatgatgataggtcatattacgttattcttagcatgtttt-caatcattttcagtaggttttagcaccaataa-ggggagtattataacgattgcc 403  Q
    ||||| |||||| | ||||| |||||||||||||| ||| |||| || | |||||||||||||||||||| ||| || | ||||||||| ||| |||| |    
T  17351081 agaatgtgatgacaagtcatcttacgttattcttaacatatttttcagttattttcagtaggttttagcaacaaaaatgaggagtattagaacaattgtc 17350982  T
Q  404 tatg 407  Q
    ||||    
T  17350981 tatg 17350978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 312 - 374
Target Start/End: Complemental strand, 21905823 - 21905760
Alignment:
Q  312 tgatgataggtcatattacgttattcttagcatg-ttttcaatcattttcagtaggttttagca 374  Q
    |||||| ||||||| ||| ||||||||||||||| |||||| |||||||| ||| |||||||||    
T  21905823 tgatgacaggtcatcttatgttattcttagcatgtttttcagtcattttctgtatgttttagca 21905760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 321 - 371
Target Start/End: Original strand, 23010052 - 23010103
Alignment:
Q  321 gtcatattacgttattcttagcatg-ttttcaatcattttcagtaggtttta 371  Q
    ||||| ||||||||||||||||||| |||||| ||||||||| |||||||||    
T  23010052 gtcatcttacgttattcttagcatgtttttcagtcattttcaataggtttta 23010103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 407
Target Start/End: Original strand, 24086321 - 24086403
Alignment:
Q  327 ttacgttattcttagcatgtttt-caatcattttcagtaggttttagcaccaataagg-ggagtattataacgattgcctatg 407  Q
    ||||||||||||||||||||||| || |   ||| |||||| ||||||| ||| |||| ||||||||| ||||||||||||||    
T  24086321 ttacgttattcttagcatgtttttcagtttattttagtaggatttagcagcaaaaaggaggagtattagaacgattgcctatg 24086403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 314 - 374
Target Start/End: Complemental strand, 22569149 - 22569088
Alignment:
Q  314 atgataggtcatattacgttattcttagcatgtttt-caatcattttcagtaggttttagca 374  Q
    |||| ||||||| ||| |||||||||| |||||||| || ||| ||||||||||||||||||    
T  22569149 atgaaaggtcatcttatgttattcttaccatgtttttcagtcaatttcagtaggttttagca 22569088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 349
Target Start/End: Complemental strand, 25537653 - 25537616
Alignment:
Q  312 tgatgataggtcatattacgttattcttagcatgtttt 349  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  25537653 tgatgacaggtcatcttacgttattcttagcatgtttt 25537616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 407
Target Start/End: Original strand, 25886191 - 25886288
Alignment:
Q  312 tgatgataggtcatattacgttattcttagcatgtttt-caatcattttcagtaggttttagcaccaataagg-ggagtattataacgattgcctatg 407  Q
    |||||| ||||||| |||||||||| ||| |||||||| |  ||||||||| ||||||||||||  || ||||  |||||||| |||||||| |||||    
T  25886191 tgatgacaggtcatcttacgttatttttatcatgtttttctgtcattttcattaggttttagcataaaaaaggaagagtattagaacgattgtctatg 25886288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 349
Target Start/End: Complemental strand, 29144732 - 29144695
Alignment:
Q  312 tgatgataggtcatattacgttattcttagcatgtttt 349  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  29144732 tgatgacaggtcatcttacgttattcttagcatgtttt 29144695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 125
Target Start/End: Complemental strand, 10579334 - 10579298
Alignment:
Q  89 ttcaaggtgctatgtcatcattaatccaaaacatgca 125  Q
    ||||||||||||  |||||||||||||||||||||||    
T  10579334 ttcaaggtgctacttcatcattaatccaaaacatgca 10579298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 312 - 371
Target Start/End: Original strand, 32130699 - 32130759
Alignment:
Q  312 tgatgataggtcatattacgttattcttagcatgttt-tcaatcattttcagtaggtttta 371  Q
    |||||| ||||||| ||||||||||||||| |||||| ||| ||||||| |||| ||||||    
T  32130699 tgatgacaggtcatcttacgttattcttagtatgtttatcagtcatttttagtaagtttta 32130759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 312 - 371
Target Start/End: Original strand, 32137912 - 32137972
Alignment:
Q  312 tgatgataggtcatattacgttattcttagcatgttt-tcaatcattttcagtaggtttta 371  Q
    |||||| ||||||| ||||||||||||||  |||||| ||| ||||||| |||||||||||    
T  32137912 tgatgacaggtcatcttacgttattcttattatgtttatcagtcatttttagtaggtttta 32137972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 312 - 371
Target Start/End: Original strand, 32139334 - 32139394
Alignment:
Q  312 tgatgataggtcatattacgttattcttagcatgttt-tcaatcattttcagtaggtttta 371  Q
    |||||| ||||||| ||||||||||||||| |||||| ||| ||||||| || ||||||||    
T  32139334 tgatgacaggtcatcttacgttattcttagtatgtttatcagtcatttttagcaggtttta 32139394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 312 - 371
Target Start/End: Original strand, 88436 - 88496
Alignment:
Q  312 tgatgataggtcatattacgttattcttagcatg-ttttcaatcattttcagtaggtttta 371  Q
    |||||| | ||||| ||||||||||||||||||| ||||||||||||||||||||||||||    
T  88436 tgatgacatgtcatcttacgttattcttagcatgtttttcaatcattttcagtaggtttta 88496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 312 - 407
Target Start/End: Complemental strand, 23133 - 23036
Alignment:
Q  312 tgatgataggtcatattacgttattcttagcatgt-tttcaatcattttcagtaggttttagcaccaataagg-ggagtattataacgattgcctatg 407  Q
    |||||| ||||||| ||| | |||||||||||||| ||||| | ||||| | ||||| |||||||||| |||| ||||||||| ||||||||||||||    
T  23133 tgatgacaggtcatcttatgctattcttagcatgtatttcagttattttaattaggtgttagcaccaaaaaggaggagtattagaacgattgcctatg 23036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 312 - 374
Target Start/End: Complemental strand, 192219 - 192156
Alignment:
Q  312 tgatgataggtcatattacgttattcttagcatg-ttttcaatcattttcagtaggttttagca 374  Q
    |||||| ||||||| |||||||||| |||||||| |||||| ||||||||| ||||||||||||    
T  192219 tgatgacaggtcatcttacgttatttttagcatggttttcagtcattttcaataggttttagca 192156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 407
Target Start/End: Original strand, 20252 - 20349
Alignment:
Q  312 tgatgataggtcatattacgttattcttagcatgtttt-caatcattttcagtaggttttagcaccaataagg-ggagtattataacgattgcctatg 407  Q
    |||||| | ||||| ||||||||||||||||||||||| ||||  | || ||||||   ||||| ||| |||| ||||||||| ||||||||||||||    
T  20252 tgatgacaagtcatcttacgttattcttagcatgtttttcaattttatttagtaggaaatagcagcaaaaaggaggagtattagaacgattgcctatg 20349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 322 - 371
Target Start/End: Original strand, 243841 - 243890
Alignment:
Q  322 tcatattacgttattcttagcatgttttcaatcattttcagtaggtttta 371  Q
    |||| |||||||||||||||||| |||| | ||||||| |||||||||||    
T  243841 tcatcttacgttattcttagcatatttttagtcattttaagtaggtttta 243890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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