View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14375_low_4 (Length: 415)
Name: NF14375_low_4
Description: NF14375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14375_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 10 - 395
Target Start/End: Complemental strand, 6163362 - 6162977
Alignment:
| Q |
10 |
agtgagatgaaaataatatttattaagaaagaattgttatgtctagtagtaccttaaggctt-atatagccaattagactaacgattgtcttaacgagtt |
108 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||| |
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| T |
6163362 |
agtgaaatgaaaataatatttattaagaaagaattgttatgtctagtagtaccttaaggctttatatagccaattagactaacggttgttttaacgagtt |
6163263 |
T |
|
| Q |
109 |
tcgacgcattgnnnnnnnnnccagttt-aggagttgtgttattaccagctcgttgtgggtgattttggctgattttttgttatcttgaagatttttagct |
207 |
Q |
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| T |
6163262 |
tcgacgcattgttttttt---cagttttaggagttgtgttattaccagctcgttgtgggtgtttttggctggttttttgttatcttgaagatttttagct |
6163166 |
T |
|
| Q |
208 |
ttgggtgtttggagttgttcagaggnnnnnnngc-tgttttatggtgtgggctgatttgggtattgatttagatgagattcaatggctatcaagtatgtc |
306 |
Q |
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| T |
6163165 |
ttgggtgtttggagttgttcagaggttttttttcctgttttatggtgtgggctgatttgggtattgatttagatgggattcaatggctatcaagtatgtc |
6163066 |
T |
|
| Q |
307 |
tatatatgggacttagcattgaaaatggctatcacatggcttcttttactcaaaatgaaacttacgtcatgtagtacaaagtgagggaa |
395 |
Q |
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| T |
6163065 |
tatatgtgggacttagcattgaaaatggctatcacatggcttcttttactcaaaatgaaacttacgtcatgtagtacaaagtgagggaa |
6162977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 133 - 397
Target Start/End: Original strand, 28159057 - 28159320
Alignment:
| Q |
133 |
tttaggagttgtgttattaccagctcgttgtgggtgattttggctgattttttgttatcttgaagatttttagctttgggtgtttggagttgttcagagg |
232 |
Q |
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| T |
28159057 |
tttaggagttgtgttattaccagctcgttgtgggtgtttttggctggttttttgttatcttgaagatttttagctttgggtgtttggagttgttcagagg |
28159156 |
T |
|
| Q |
233 |
nnnnnnngctgttttatggtgtgggctgatttgggtattgatttagatgagattcaatggctatcaagtatgtctatatatgggacttagcattgaaaat |
332 |
Q |
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| T |
28159157 |
tttttttgttgttt-atggtgtgggctgatttgggtattgatttagatgggattcaatggctatcaagtatgtctatatatgggacttagcattgaaaat |
28159255 |
T |
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| Q |
333 |
ggctatcacatggcttcttttactcaaaatgaaacttacgtcatgtagtacaaagtgagggaatt |
397 |
Q |
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| T |
28159256 |
ggctatcacatgacttcttttactcaaaatgaaacttatgtcatgtagtacaaagtgagggaatt |
28159320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 10 - 118
Target Start/End: Original strand, 28158922 - 28159030
Alignment:
| Q |
10 |
agtgagatgaaaataatatttattaagaaagaattgttatgtctagtagtaccttaaggcttatatagccaattagactaacgattgtcttaacgagttt |
109 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
28158922 |
agtgaaatgaaaataatatttattaagaaagaattgttatgtctagtagtaccttaaggcttatatagccaattagactaacggttgtcttaacgagttt |
28159021 |
T |
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| Q |
110 |
cgacgcatt |
118 |
Q |
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|||||||| |
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| T |
28159022 |
tgacgcatt |
28159030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 26925817 - 26925883
Alignment:
| Q |
18 |
gaaaataatatttattaagaaagaattgttatgtctagtagtaccttaaggcttatatagccaatta |
84 |
Q |
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|||||||||||| |||| || |||||||||| | | |||||| |||||||||||||||||||||| |
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| T |
26925817 |
gaaaataatattgattatgagagaattgttacattaactagtacattaaggcttatatagccaatta |
26925883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 134 - 397
Target Start/End: Complemental strand, 14359332 - 14359069
Alignment:
| Q |
134 |
ttaggagttgtgttattaccagctcgttgtgggtgattttggctgattttttgttatcttgaagatttttagctttgggtgtttggagttgttcagaggn |
233 |
Q |
| |
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|||||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||| ||| |||||||||||||||||||| ||||||||||||| |
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| T |
14359332 |
ttaggagttgtgttattaccagcttgttgtgggtgtttttggctgtttttttgttatctttaaggtttttagctttgggtgtttgaagttgttcagaggt |
14359233 |
T |
|
| Q |
234 |
nnnnnngctgttttatggtgtgggctgatttgggtattgatttagatgagattcaatggctatcaagtatgtctatatatgggacttagcattgaaaatg |
333 |
Q |
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| T |
14359232 |
ttttttgttgttttatggtgtgggctgatttgggtattgatttagatgggattcaatggctatcaagtatgtctatatattggacttagcattgaaaatg |
14359133 |
T |
|
| Q |
334 |
gctatcacatggcttcttttactcaaaatgaaacttacgtcatgtagtacaaagtgagggaatt |
397 |
Q |
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| T |
14359132 |
gctatcacatggcttcttttactcaaaataaaacttacgtcatgtagtacaaattgagggaatt |
14359069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 10 - 85
Target Start/End: Complemental strand, 14359404 - 14359329
Alignment:
| Q |
10 |
agtgagatgaaaataatatttattaagaaagaattgttatgtctagtagtaccttaaggcttatatagccaattag |
85 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14359404 |
agtgaaatgaaaataatatttattaagaaagaattgttatgtctagtagtaccttaaggcttatatagccaattag |
14359329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 98; Significance: 4e-48; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 10 - 119
Target Start/End: Complemental strand, 4839940 - 4839831
Alignment:
| Q |
10 |
agtgagatgaaaataatatttattaagaaagaattgttatgtctagtagtaccttaaggcttatatagccaattagactaacgattgtcttaacgagttt |
109 |
Q |
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| T |
4839940 |
agtgaaatgaaaataatatttattaagaaagaattgttatgtctaatagtaccttaaggcttatatagccaattagactaacggttgtcttaacgagttt |
4839841 |
T |
|
| Q |
110 |
cgacgcattg |
119 |
Q |
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|||||||||| |
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| T |
4839840 |
cgacgcattg |
4839831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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