View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14375_low_6 (Length: 385)

Name: NF14375_low_6
Description: NF14375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14375_low_6
NF14375_low_6
[»] chr1 (3 HSPs)
chr1 (133-258)||(52162254-52162378)
chr1 (317-369)||(52162415-52162467)
chr1 (1-59)||(52162128-52162186)


Alignment Details
Target: chr1 (Bit Score: 92; Significance: 1e-44; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 133 - 258
Target Start/End: Original strand, 52162254 - 52162378
Alignment:
Q  133 atggactttaaaacatttgtgaacattctttttaatatatgctaattttaaaacgnnnnnnnaagaagtaaaattaaaatcattcaagaaaaatgatacg 232  Q
    ||||||||||||||||||||||||||||||||| || ||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||    
T  52162254 atggactttaaaacatttgtgaacattctttttgatgtatgctaattttaaaacgtttttt-aagaagtaaaattaaaatcattcaagaaaaatgatacg 52162352  T
Q  233 gaaacgactgactttcaagcacagga 258  Q
    ||||||||||||||||||||||||||    
T  52162353 gaaacgactgactttcaagcacagga 52162378  T

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Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 317 - 369
Target Start/End: Original strand, 52162415 - 52162467
Alignment:
Q  317 caatgtaatagttcatattcataaacaaaagtaaacatttcaaacaatggaat 369  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52162415 caatgtaatagttcatattcataaacaaaagtaaacatttcaaacaatggaat 52162467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 52162128 - 52162186
Alignment:
Q  1 atggtttggaatagggaaaattttctataaatatctatcaatctacttactattgttcc 59  Q
    |||||||| |||||||||  |||| ||||||||||||||||||||||||||||||||||    
T  52162128 atggtttgaaatagggaattttttttataaatatctatcaatctacttactattgttcc 52162186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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