View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14375_low_7 (Length: 385)
Name: NF14375_low_7
Description: NF14375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14375_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 1 - 365
Target Start/End: Complemental strand, 52161935 - 52161576
Alignment:
| Q |
1 |
ataagaaaatgctttgctgtatattaatttaaaagtaacgcttcttacagtttctgattccacnnnnnnngaattccaatattcacnnnnnnnnnnnnnn |
100 |
Q |
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|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| ||||||||||||||| |
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| T |
52161935 |
ataagaaaatgctttgctgtatattaatttaaaattaacgtttcttacagtttctgattccacaaaaaaacaattccaatattcacgtgtgttgtgttgt |
52161836 |
T |
|
| Q |
101 |
nnnnnaacttcttcactcacttcaacgttagttcaacttcaaccaaacccattannnnnnnnnnnnnnnnnnnnaaaaaccatggctttgtgctactgtt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
52161835 |
-----aacttcttcactcacttcaacgttagttcaacttcaaccaaacccattactctctctctctctctctctaaaaaccatggctttgtgctactgtt |
52161741 |
T |
|
| Q |
201 |
acaaacccacattattcatcattgttttcacattcttcatttctcaatcttttgcagtcaaaatctcacaaccacatcattctcttccattcatttggcc |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52161740 |
acaaacccacattattcatcattgttttcacattcttcatttctcaatcttttgcagtcaaaatctcacaaccacatcattctcttccattcatttggcc |
52161641 |
T |
|
| Q |
301 |
tcttcctgcaaaattcacattcggcaatgaatctctttccattgatccatcactttccctcaccg |
365 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
52161640 |
tcttcctgcaaaattcacattcggcaatgattctctttccattgatccatcactttccctcaccg |
52161576 |
T |
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