View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14376_high_11 (Length: 533)
Name: NF14376_high_11
Description: NF14376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14376_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 436; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 9 - 506
Target Start/End: Original strand, 34131135 - 34131646
Alignment:
| Q |
9 |
atcttgggcaagaatagttaaggcaccagcatccttgtgtcgtccaactccaagtgctaggtgagggtaagggcatggaggatagtggttgaatctaata |
108 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34131135 |
atcttgggcaagaatagttaaggcaccagcatccttgtgtcgtccaactccaagtgctaggtgagggtaagggcatggaggatagtggttgaatctaata |
34131234 |
T |
|
| Q |
109 |
aagctagtttgatacttgaagaattcttcaaacctctttgcttcaagtcctaagcttagagctattagctccagcaacctataggccagcttttccacct |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
34131235 |
aagctagtttgatacttgaagaattcttcaaacctctttgcttcaagtcctaagcttagagctattagctccagcaacctatatgccagcttttccacct |
34131334 |
T |
|
| Q |
209 |
cttgaatatactcttcaagtatagccctgctcatgtagacatcaattttaaacataacccattaaattgagcatcaatctacctttgaatattctaaatg |
308 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34131335 |
cttgaatatactcttcaagtatagccctgctcatgtagacatcaattttaaacacaacccattaaattgagcatcaatctacctttgaatattctaaatg |
34131434 |
T |
|
| Q |
309 |
acca----------aaaagttcgtttttcaaatgaaattattcactatttatattaattatcaatcttacaatttgggttctgaataactcaaccataaa |
398 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
34131435 |
accaaaagaaaatgaaaagttcgtttttcaaatgaaattattcactatttatattaattatcaatcttacaatttgggttttgaataactcaaccataaa |
34131534 |
T |
|
| Q |
399 |
atcggttgtaaggtgagaaatgttcacctatacacttgagt----cacacacctccacacgagacattcgtgcccaaagtgacccaataaggatttggat |
494 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
34131535 |
atcggttgtaaggtgagaaatgttcacctatacacttgagtcacgcacgcacctccacacgagacatgcgtgcccaaagtgacccaataaggatttggat |
34131634 |
T |
|
| Q |
495 |
cctctaccgttg |
506 |
Q |
| |
|
||||||| |||| |
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| T |
34131635 |
cctctactgttg |
34131646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 18 - 272
Target Start/End: Original strand, 34139993 - 34140247
Alignment:
| Q |
18 |
aagaatagttaaggcaccagcatccttgtgtcgtccaactccaagtgctaggtgagggtaagggcatggaggatagtggttgaatctaataaagctagtt |
117 |
Q |
| |
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||||||||| |||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |
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| T |
34139993 |
aagaatagtcaaggcaccagcatccttgtgtcttccaaggccaagagctaggtgagggtaagggcatggaggatagtagttgaatcttataaagctagtt |
34140092 |
T |
|
| Q |
118 |
tgatacttgaagaattcttcaaacctctttgcttcaagtcctaagcttagagctattagctccagcaacctataggccagcttttccacctcttgaatat |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| ||| || |||||||||||||| ||||| |||| |
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| T |
34140093 |
tgatacttgaagaattcttcaaacctctttgcttcaagtcctaagcttaaagctataagctccaataacttacgggccagcttttccatctcttcgatat |
34140192 |
T |
|
| Q |
218 |
actcttcaagtatagccctgctcatgtagacatcaattttaaacataacccatta |
272 |
Q |
| |
|
||||||||| |||| | || ||||||| ||||||||||||||| | ||||||||| |
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|
| T |
34140193 |
actcttcaattataactctactcatgttgacatcaattttaaaaacaacccatta |
34140247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 9 - 260
Target Start/End: Original strand, 34136826 - 34137077
Alignment:
| Q |
9 |
atcttgggcaagaatagttaaggcaccagcatccttgtgtcgtccaactccaagtgctaggtgagggtaagggcatggaggatagtggttgaatctaata |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||| || || ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34136826 |
atcttgggcaagaatagttaaggcaccagcatccttgtgtcgcccaacgccgagagctaggtgagggtaagggcatggaggatagtggttgaatctaata |
34136925 |
T |
|
| Q |
109 |
aagctagtttgatacttgaagaattcttcaaacctctttgcttcaagtcctaagcttagagctattagctccagcaacctataggccagcttttccacct |
208 |
Q |
| |
|
|||||||| |||| |||||||| |||||||||||||||||||||| ||||||||| | |||||||||||| |||||| | || |||| |||||||| || |
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| T |
34136926 |
aagctagtgtgatctttgaagaactcttcaaacctctttgcttcaactcctaagctcaaagctattagctcaagcaacttgtaagccaacttttccatct |
34137025 |
T |
|
| Q |
209 |
cttgaatatactcttcaagtatagccctgctcatgtagacatcaattttaaa |
260 |
Q |
| |
|
||| | |||||||||||| |||||||||||| |||| |||| ||||||||| |
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|
| T |
34137026 |
cttcattatactcttcaactatagccctgcttatgttcacataaattttaaa |
34137077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 9 - 279
Target Start/End: Original strand, 34125993 - 34126263
Alignment:
| Q |
9 |
atcttgggcaagaatagttaaggcaccagcatccttgtgtcgtccaactccaagtgctaggtgagggtaagggcatggaggatagtggttgaatctaata |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||| | ||||| ||||| | ||| |||| |||||||||||||| |||| ||||| |
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|
| T |
34125993 |
atcttgggcaagaatagttaaggcaccagcatccttgtgtcttcccatgccaagagctagctcaggagaaggacatggaggatagtgattgattctaaac |
34126092 |
T |
|
| Q |
109 |
aagctagtttgatacttgaagaattcttcaaacctctttgcttcaagtcctaagcttagagctattagctccagcaacctataggccagcttttccacct |
208 |
Q |
| |
|
| ||||||| || |||||||||||||||||||||| |||||||||| |||||||| | |||||||| |||||||||| || |||||| ||||||| || |
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| T |
34126093 |
acgctagttgtatccttgaagaattcttcaaacctcattgcttcaagccctaagctcaaagctattaactccagcaacttagaggccaaattttccatct |
34126192 |
T |
|
| Q |
209 |
cttgaatatactcttcaagtatagccctgctcatgtagacatcaattttaaacataacccattaaattgag |
279 |
Q |
| |
|
| | |||||||||||||| |||| ||||||||||| ||||| |||||||||||||||| ||||||||||| |
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|
| T |
34126193 |
ccttaatatactcttcaattatattcctgctcatgttgacattaattttaaacataaccaattaaattgag |
34126263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 9 - 223
Target Start/End: Original strand, 34142630 - 34142847
Alignment:
| Q |
9 |
atcttgggcaagaatagttaaggcaccagcatccttgtgtcgtccaactccaagtgctaggtgagggtaagggcatggaggatagtggttgaatctaata |
108 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| ||| | ||| | ||||| || |||||||||||||||||||||||||| ||||| | ||||| | |
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| T |
34142630 |
atcttgggcaagaatagttaaggcaccagaatccttatgtggaccagcaccaagagcaaggtgagggtaagggcatggaggataatggttaagtctaaga |
34142729 |
T |
|
| Q |
109 |
aagctagtttgatact---tgaagaattcttcaaacctctttgcttcaagtcctaagcttagagctattagctccagcaacctataggccagcttttcca |
205 |
Q |
| |
|
||||||||||||| | |||||||||||||||||||||||||||||| ||||||||| |||||||| ||||| |||||| || |||| |||||||||| |
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|
| T |
34142730 |
aagctagtttgatctttgatgaagaattcttcaaacctctttgcttcaactcctaagctaagagctatgagctctagcaacgtaaaggctagcttttcca |
34142829 |
T |
|
| Q |
206 |
cctcttgaatatactctt |
223 |
Q |
| |
|
||||| ||||||||||| |
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|
| T |
34142830 |
tctctttaatatactctt |
34142847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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