View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14376_high_19 (Length: 439)
Name: NF14376_high_19
Description: NF14376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14376_high_19 |
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Alignment Details
Target: chr1 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 1 - 423
Target Start/End: Original strand, 36168704 - 36169130
Alignment:
| Q |
1 |
ttactttatacatacatctacaaaacacataacacatctaccctcaaacctcaaccatactctaacgtaagttggtat----tgttagtgtcggtattaa |
96 |
Q |
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| T |
36168704 |
ttactttatacatacatctacaaaacacataacacatctaccctcaaacctcaaccatactctaacgtaagttggtatatattgttagtgttggtattaa |
36168803 |
T |
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| Q |
97 |
ttccaaatttcttaaaaaatgaatgtagcagttgtaaacagcaccaccgtgacagattttgtcaatgacaaaacaaatttcgatagtttcgtgaaggaat |
196 |
Q |
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| T |
36168804 |
ttccaaatttcttaaaaaatgaatgtagcagttgtaaacagcaccaccgtgacagattttgtcaatgacacaacaaatttcgatagtttcgtgaaggaat |
36168903 |
T |
|
| Q |
197 |
ggtttgcaatgctagatgccaatggtgatggtaacctttcgcgtgatgaaattcgtggtggatttgcatggtttatgcctttaggctcccattcacagtc |
296 |
Q |
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| T |
36168904 |
ggtttgcaatgctagatgccaatggtgacggtaacctttcgcgtgatgaaattcgtggtggatttgcatggtttatgcctttaggctcccattcacagtc |
36169003 |
T |
|
| Q |
297 |
acaagaagagattgatcgcatattggaattgatattcacaagatttgatgaagatcaaaatgattcactcgatttaaatgggtttaaatcgttaatgacg |
396 |
Q |
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| T |
36169004 |
acaagaagagattgatcgcatattggaattgatattcacaagatttgatgaagatcaaaatgattcactcgatttaaatgggtttaaatcgttaatgacg |
36169103 |
T |
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| Q |
397 |
gaaattatgaatgctgttgctcgtggg |
423 |
Q |
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| T |
36169104 |
gaaattatgaatgccgttgctcgtggg |
36169130 |
T |
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