View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14376_high_20 (Length: 425)
Name: NF14376_high_20
Description: NF14376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14376_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 16 - 252
Target Start/End: Original strand, 1256105 - 1256341
Alignment:
| Q |
16 |
aatatcgaatataactacatatccatgaaagttgaattatagtcaagttgagttaaatacattcatttttggtgtacgagttcaaacattaaatcaaaac |
115 |
Q |
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| T |
1256105 |
aatatcgaatataactacatatccacgaaagttgaattatagtcaagttgagttaaatacattcatttttggtgtacgagttcaaacattaaattaaaac |
1256204 |
T |
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| Q |
116 |
atagcagtaaacaaaatatctaacattattgtactaagtacaagcctaaatnnnnnnnngcattcaactttgtcatgaaattcaccatcatctatgtcgt |
215 |
Q |
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| T |
1256205 |
atagcagtaaacaaaatgtctaacattattgtactaagtacaagcctaaataaaaaaaagcattcaactttgtcatgaaattcaccatcatctatgtcgt |
1256304 |
T |
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| Q |
216 |
tctcttaaaattcatcacctacgatatcttgaaattt |
252 |
Q |
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| T |
1256305 |
tctcttaaaattcatcacctacgacatcttgaaattt |
1256341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 313 - 404
Target Start/End: Original strand, 1256402 - 1256493
Alignment:
| Q |
313 |
accttgttacataagaaagtagaataaaatacattaatcatagataatgttagatcaatggacaataaggaagaagtcatcaagagttatac |
404 |
Q |
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| T |
1256402 |
accttgttacataagaaagtagaataaaatacattaatcatagataatgttagatcaatggacaataaggaagaagtcatcaagagttatac |
1256493 |
T |
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