View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14376_high_23 (Length: 411)
Name: NF14376_high_23
Description: NF14376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14376_high_23 |
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Alignment Details
Target: chr8 (Bit Score: 363; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 18 - 396
Target Start/End: Original strand, 22328600 - 22328978
Alignment:
| Q |
18 |
cttttcgccggaaactcctcccttggttacgacggtggtggaagtggaagcaccttgtggtctgagcagcaacaacagcatcagcatcaagaggaacatg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
22328600 |
cttttcgccggaaactcctcccttggttacgacggtggtggaagtggaagcaccttgtggtctgagcagcaacaacagcagcagcatcaagaggaacatg |
22328699 |
T |
|
| Q |
118 |
ataacggcagattgcatagaatgatggcttggaatgctaataatgttaatgctaatgctgcagatggtggcaacagtggccatggtgctggatttgtgtt |
217 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
22328700 |
ataacggcagattgaatagaatgatggcttggaatgctaataatattaatgctaatgctgcagatggtggtaacagtggccatggtgctggatttgtgtt |
22328799 |
T |
|
| Q |
218 |
cagtacaccggcaccggcgtttggcggttatggtcagttttttactcagaggggaccccttcagtccagttacaatccttcagttcgtgcttggatagat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22328800 |
cagtacaccggcaccggcgtttggcggttatggtcagttttttactcagaggggaccccttcagtccagttacaatccttcagttcgtgcttggatagat |
22328899 |
T |
|
| Q |
318 |
ccttcaatggcgacggcgaatatcgttgatcaccatcatcactatctttcgccgatgatccatcaggcttctgtctctg |
396 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22328900 |
ccttcaatggcgacggcgaatatcgttgatcaccatcatcactatctttcgccgatgatccatcaggcttctgtctctg |
22328978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 99 - 206
Target Start/End: Complemental strand, 2535105 - 2534998
Alignment:
| Q |
99 |
cagcatcaagaggaacatgataacggcagattgcatagaatgatggcttggaatgctaataatgttaatgctaatgctgcagatggtggcaacagtggcc |
198 |
Q |
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| T |
2535105 |
cagcagcaagaggatcatgatagtggtagattgcatagaatgatggcttggaatgctaataatgttaatgctaatgctgtagatggtggtaacagtggcc |
2535006 |
T |
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| Q |
199 |
atggtgct |
206 |
Q |
| |
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|||||||| |
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| T |
2535005 |
atggtgct |
2534998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 4e-42; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 99 - 206
Target Start/End: Original strand, 11447753 - 11447860
Alignment:
| Q |
99 |
cagcatcaagaggaacatgataacggcagattgcatagaatgatggcttggaatgctaataatgttaatgctaatgctgcagatggtggcaacagtggcc |
198 |
Q |
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||||| |||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
11447753 |
cagcagcaagaggaacatgatagtggtagattgcatagaatgatggcttggaatgctaataatgttaatgctaatgctgcagatggtggtaacagtggcc |
11447852 |
T |
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| Q |
199 |
atggtgct |
206 |
Q |
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|||||||| |
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| T |
11447853 |
atggtgct |
11447860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 264 - 317
Target Start/End: Original strand, 32507022 - 32507075
Alignment:
| Q |
264 |
cagaggggaccccttcagtccagttacaatccttcagttcgtgcttggatagat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
32507022 |
cagaggggaccccttcagtccagttacaatccttcagttcgtgcttggttagat |
32507075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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