View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14376_high_30 (Length: 367)
Name: NF14376_high_30
Description: NF14376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14376_high_30 |
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Alignment Details
Target: chr3 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 28 - 355
Target Start/End: Original strand, 47838184 - 47838511
Alignment:
| Q |
28 |
cttggcatacaggttacgttcttcacaacatatgttttatcatctggttgggcaagtctagcatttgagattattcaaccgtttcctcttttttgtaaca |
127 |
Q |
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| T |
47838184 |
cttggcatacaggttacgttcttcacaacatatgttttatcatctggttgggcaagtctagcatttgagattattcaaccgtttcctcttttttgtaaca |
47838283 |
T |
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| Q |
128 |
tgttccaaagattagtactatgttctggtaaagattcatacaacggaactctaacttttccataccatacagaagttccaaggatccttctatttggatt |
227 |
Q |
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| T |
47838284 |
tgttccaaagattagtactatgttctggtaaagattcatacaacggaactctaacttttccataccatacagaagttccaaggatccttctatttggatt |
47838383 |
T |
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| Q |
228 |
tctcgggttcacatgttctattttggcacccctgatactgccctttttattgttctactttttcctagcatacctcgtttaccgtaaccaggttagactt |
327 |
Q |
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| T |
47838384 |
tctcgggttcacatgttctattctggcacccctgatactgccctttttattgttctactttttcctagcatacctcgtttaccgtaaccaggttagactt |
47838483 |
T |
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| Q |
328 |
tcaccgtgttattgtgttcttttgttca |
355 |
Q |
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| T |
47838484 |
tcaccgtgttattgtgttcttttgttca |
47838511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 179 - 323
Target Start/End: Complemental strand, 4705216 - 4705072
Alignment:
| Q |
179 |
taacttttccataccatacagaagttccaaggatccttctatttggatttctcgggttcacatgttctattttggcacccctgatactgccctttttatt |
278 |
Q |
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| T |
4705216 |
taacttttccataccatacagaagttcctaggctattactgtttggatttcttgggttcacctgttctattctggcacctctaatgcttcccttcttatt |
4705117 |
T |
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| Q |
279 |
gttctactttttcctagcatacctcgtttaccgtaaccaggttag |
323 |
Q |
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| T |
4705116 |
gatctactttttccttgcttatcttgtttaccgaaaccaggttag |
4705072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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