View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14376_high_32 (Length: 364)
Name: NF14376_high_32
Description: NF14376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14376_high_32 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 145; Significance: 3e-76; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 151 - 364
Target Start/End: Original strand, 3822907 - 3823130
Alignment:
| Q |
151 |
actcttagatgaggtatttcactagtcaaatgatgagttcaatttgttaataaacttcacttaagggcaattgttcggaagaatctcaaatttaattttt |
250 |
Q |
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| T |
3822907 |
actcttagatgaggtatttcactagtcaaatgatgagttcaatttgttaataaacttcacttaagggcaatcgttcggaagaatctcaaatttaattttt |
3823006 |
T |
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| Q |
251 |
gagtgaaacaatttttaactttgaaatcacatacagtgttgcaacg----------ttcatgtaaacttattattcttttnnnnnnnntaacaaaaattg |
340 |
Q |
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| T |
3823007 |
gagtgaaacaatctttaactttgaaatcacatatagtgttgcaacgttaccataaattcgtgtaaacttattattcttttaaaaaaaataacaaaaattg |
3823106 |
T |
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| Q |
341 |
attgaattcaaaaataggttggag |
364 |
Q |
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| T |
3823107 |
tttgaattcaaaaataggttggag |
3823130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 3 - 151
Target Start/End: Original strand, 3822600 - 3822754
Alignment:
| Q |
3 |
aggaaaatgtcatttagcaattatgggctgcttgtcttttggatttgaaccgtcaaatatacaaatattggttcttaaattcagaattttcatttgactc |
102 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
3822600 |
aggaaaatgtcatttagcaattatgggctgcttgtcttttggatttgaaccgtcaaatatacaaatattggttcttaaattcaggattttcatttgactc |
3822699 |
T |
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| Q |
103 |
tgaccatacttttctagagagtctat------gatgagtggatttgaatacgcta |
151 |
Q |
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| T |
3822700 |
tgaccatacttttctagagagtctatgtattagatgagtggatttgaatacgcta |
3822754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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