View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14376_high_39 (Length: 330)
Name: NF14376_high_39
Description: NF14376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14376_high_39 |
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Alignment Details
Target: chr3 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 20 - 318
Target Start/End: Complemental strand, 52762175 - 52761878
Alignment:
| Q |
20 |
ttgcgatcagaacctatgcaacttgttcaattgatcattccaattgaatcagctcagcgatccatctcttaccttggcgatctcggcctttttcaattca |
119 |
Q |
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| T |
52762175 |
ttgcgatcagaacctatgcaacttgttcaattgatcattccaattgaatcagctcagcgatccatctcttaccttggcgatctcggcctttttcaattca |
52762076 |
T |
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| Q |
120 |
aagatgtatgaatcctttaattaccaatctttgtcctttctcactttgcattcttgatgacgcttcggactacattttccataatgttgagatgttcttc |
219 |
Q |
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| T |
52762075 |
aagatgtatgaatcctttaattaccaatctttgtcctt-ctcactttgtattctttatgacgcttcggactacattttccataatgttgagatgttcttc |
52761977 |
T |
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| Q |
220 |
atctatctgaattagcattatttatatactacattgataaatcttgtttaaatcaattcttcagcttaatgaagataaaagcccattccaacagaccta |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52761976 |
atctatctgaattagcattatttatatactacattgataaatcttgtttaaatcaattcttcagcttaatgaagataaaagcccattccaacagaccta |
52761878 |
T |
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