View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14376_high_40 (Length: 326)
Name: NF14376_high_40
Description: NF14376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14376_high_40 |
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Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 19 - 312
Target Start/End: Original strand, 23865649 - 23865941
Alignment:
| Q |
19 |
ttggttaaagaattcattaatattgccagccatatactcaagttatagcaaattgctcctttgatccaaaatgtcacctgcatctctttatcacattctg |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||||||||||| |
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| T |
23865649 |
ttggttaaagaattcattaatattgccagccatatactcaagttatagcaaattgtccctttgatccaaaatgtcacttgcatctcttcatcacattctg |
23865748 |
T |
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| Q |
119 |
ctgccaattcaccactccaaaaccaaccataaacccagatatatgcagcaatcggcgaacagactaaaccatacccaaccacacctgccagtccaaagtt |
218 |
Q |
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|||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
23865749 |
ctgccagttcaccactccaaaaccaaccataaacacagatatatgcagcaatcggcgaacagactaaaccatacccaaccacacctgccattccaaagtt |
23865848 |
T |
|
| Q |
219 |
tctcagaacataaaaaccaacnnnnnnnatgcaaacctacttattttagtactttaataaatgtcccaaaggcatttattattattctccttat |
312 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||| |
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| T |
23865849 |
tctcagaacataaaaaccaac-ttttttatgcaaacctacttattttagtactttaataaatgttccaaaggcattcattagcattctccttat |
23865941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 108 - 199
Target Start/End: Complemental strand, 23359392 - 23359300
Alignment:
| Q |
108 |
atcacattctgctgccaattcaccactccaaaaccaaccataaacccagatatatgcagcaatcggcga-acagactaaaccatacccaacca |
199 |
Q |
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||||| |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| || | | |||||||||| |||| ||||| |
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| T |
23359392 |
atcaccttctgctgccaattcaccactccaaaaccaaccagaaacacagatatatgcagcaatcagccagagagactaaaccgtaccgaacca |
23359300 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 108 - 199
Target Start/End: Complemental strand, 23364213 - 23364121
Alignment:
| Q |
108 |
atcacattctgctgccaattcaccactccaaaaccaaccataaacccagatatatgcagcaatcggcga-acagactaaaccatacccaacca |
199 |
Q |
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||||| |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| || | | |||||||||| |||| ||||| |
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| T |
23364213 |
atcaccttctgctgccaattcaccactccaaaaccaaccagaaacacagatatatgcagcaatcagccagagagactaaaccgtaccgaacca |
23364121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 108 - 199
Target Start/End: Complemental strand, 23694691 - 23694599
Alignment:
| Q |
108 |
atcacattctgctgccaattcaccactccaaaaccaaccataaacccagatatatgcagcaatcggcga-acagactaaaccatacccaacca |
199 |
Q |
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||||| |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| || | | |||||||||| |||| ||||| |
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| T |
23694691 |
atcaccttctgctgccaattcaccactccaaaaccaaccagaaacacagatatatgcagcaatcagccagagagactaaaccgtaccgaacca |
23694599 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 108 - 199
Target Start/End: Complemental strand, 23713131 - 23713039
Alignment:
| Q |
108 |
atcacattctgctgccaattcaccactccaaaaccaaccataaacccagatatatgcagcaatcggcga-acagactaaaccatacccaacca |
199 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| || | | |||||||||| |||| ||||| |
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| T |
23713131 |
atcaccttctgctgccaattcaccactccaaaaccaaccagaaacacagatatatgcagcaatcagccagagagactaaaccgtaccgaacca |
23713039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 108 - 199
Target Start/End: Complemental strand, 23731587 - 23731495
Alignment:
| Q |
108 |
atcacattctgctgccaattcaccactccaaaaccaaccataaacccagatatatgcagcaatcggcga-acagactaaaccatacccaacca |
199 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| || | | |||||||||| |||| ||||| |
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| T |
23731587 |
atcaccttctgctgccaattcaccactccaaaaccaaccagaaacacagatatatgcagcaatcagccagagagactaaaccgtaccgaacca |
23731495 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 108 - 199
Target Start/End: Complemental strand, 23750042 - 23749950
Alignment:
| Q |
108 |
atcacattctgctgccaattcaccactccaaaaccaaccataaacccagatatatgcagcaatcggcga-acagactaaaccatacccaacca |
199 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| || | | |||||||||| |||| ||||| |
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| T |
23750042 |
atcaccttctgctgccaattcaccactccaaaaccaaccagaaacacagatatatgcagcaatcagccagagagactaaaccgtaccgaacca |
23749950 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 290
Target Start/End: Complemental strand, 47510775 - 47510735
Alignment:
| Q |
250 |
caaacctacttattttagtactttaataaatgtcccaaagg |
290 |
Q |
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| T |
47510775 |
caaacttacttattttagtactttaatcaatgccccaaagg |
47510735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 312
Target Start/End: Original strand, 54335236 - 54335301
Alignment:
| Q |
247 |
atgcaaacctacttattttagtactttaataaatgtcccaaaggcatttattattattctccttat |
312 |
Q |
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|||||||| |||||||||||||||||||| |||| ||||| | || ||||| |||||||||||| |
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| T |
54335236 |
atgcaaacttacttattttagtactttaaccaatgccccaatgacacatattagtattctccttat |
54335301 |
T |
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