View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14376_high_42 (Length: 322)
Name: NF14376_high_42
Description: NF14376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14376_high_42 |
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Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 47893249 - 47892941
Alignment:
| Q |
1 |
gatataagtttaatttaaatatctctctctcatcttaagtagtactgtatgcttttcctcaaacagataattatctcatgtaattatttgttattttaaa |
100 |
Q |
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|||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47893249 |
gatataagtttaatttaaatctatctctctcatcttaagtagtactgtatgcttttcctcaaacagataattatctcatgtaattatttgttattttaaa |
47893150 |
T |
|
| Q |
101 |
atactnnnnnnntttaatcacannnnnnnnactaataccttgatatgatactatcttaatccatttaataattttattnnnnnnntgtagattagataat |
200 |
Q |
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||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
47893149 |
atactaaaaaaatttaatcacattttttttactaataccttgatatgatactatcttaatccatttaataattttattaaaaaaatgtagattagataat |
47893050 |
T |
|
| Q |
201 |
ctaaattatactaaaatataagacggaaatagtacttttctagcaattaatgctaatttgtcgtctacggttcatctattatatagccatgcccccctct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47893049 |
ctaaattatactaaaatataagacggaaatagtacttttctagcaattaatgctaatttgtcgtctacggttcatctattatatagccatgcccccctct |
47892950 |
T |
|
| Q |
301 |
tagccatct |
309 |
Q |
| |
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||||||||| |
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| T |
47892949 |
tagccatct |
47892941 |
T |
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