View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14376_high_43 (Length: 322)

Name: NF14376_high_43
Description: NF14376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14376_high_43
NF14376_high_43
[»] chr5 (4 HSPs)
chr5 (18-309)||(16194198-16194486)
chr5 (215-309)||(39946539-39946633)
chr5 (188-245)||(39945857-39945914)
chr5 (175-245)||(16195107-16195177)
[»] chr1 (1 HSPs)
chr1 (188-312)||(6942203-6942327)
[»] chr2 (2 HSPs)
chr2 (175-219)||(44986812-44986856)
chr2 (175-224)||(20606920-20606969)
[»] chr8 (1 HSPs)
chr8 (175-224)||(26847720-26847769)
[»] chr4 (4 HSPs)
chr4 (175-224)||(14527575-14527624)
chr4 (174-222)||(24666128-24666176)
chr4 (175-227)||(34450815-34450867)
chr4 (168-224)||(45393974-45394030)
[»] chr7 (1 HSPs)
chr7 (175-227)||(34808985-34809037)
[»] chr3 (1 HSPs)
chr3 (175-219)||(47571943-47571987)


Alignment Details
Target: chr5 (Bit Score: 171; Significance: 8e-92; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 18 - 309
Target Start/End: Original strand, 16194198 - 16194486
Alignment:
Q  18 aaaattgggtctttatatagaactaaacacagtagaaaaactgataaacaaacacgttattacgttaatgcccgtcaatccgttgttagtagcttatttc 117  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  16194198 aaaattgggtctttatatagaactaaacacagcagaaaaactgataaacaaacacgttattacgttaatgcccgtcaatccgttgttactagcttatttc 16194297  T
Q  118 ataacataactctctacnnnnnnnnnnnnnnnnngggtgatatggtc--ttttttatttggtgaattctagagtgaaggatcaattaagttcctcatcgg 215  Q
    ||||||||| |||||||                 |||||||||||||  ||||||||||| || ||| |||||||| ||||||||||||| | ||||| |    
T  16194298 ataacataattctctac-----ttttgttttttcgggtgatatggtcttttttttatttgatggattatagagtgagggatcaattaagtccatcatcag 16194392  T
Q  216 tgaaccactttattccaccgtcagattaaatatgtctataggatttcattacttattaccacactggatctttgctccatgtcctttcttctct 309  Q
    ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  16194393 tgaaccactttattccaccgtcagattaaatatgtctctagaatttcattacttattaccacactggatctttgctccatgtcctcttttctct 16194486  T

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Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 215 - 309
Target Start/End: Complemental strand, 39946633 - 39946539
Alignment:
Q  215 gtgaaccactttattccaccgtcagattaaatatgtctataggatttcattacttattaccacactggatctttgctccatgtcctttcttctct 309  Q
    ||||||||||| ||| |||||| |||||||||| ||||| | |||||||||||||||||||||||||||||||||||||||||| | ||||||||    
T  39946633 gtgaaccacttaatttcaccgttagattaaatacgtctacaagatttcattacttattaccacactggatctttgctccatgtcatgtcttctct 39946539  T

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Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 188 - 245
Target Start/End: Original strand, 39945857 - 39945914
Alignment:
Q  188 gtgaaggatcaattaagttcctcatcggtgaaccactttattccaccgtcagattaaa 245  Q
    |||| ||| ||||||||| ||||||||||| |||||||||||||||||||||||||||    
T  39945857 gtgagggaccaattaagtccctcatcggtgtaccactttattccaccgtcagattaaa 39945914  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 245
Target Start/End: Complemental strand, 16195177 - 16195107
Alignment:
Q  175 ggtgaattctagagtgaaggatcaattaagttcctcatcggtgaaccactttattccaccgtcagattaaa 245  Q
    |||| ||||||| |||| ||||||||||||| | |||  |||| ||||| |||||||||||||||||||||    
T  16195177 ggtggattctagggtgagggatcaattaagtccatcactggtgtaccacattattccaccgtcagattaaa 16195107  T

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Target: chr1 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 188 - 312
Target Start/End: Original strand, 6942203 - 6942327
Alignment:
Q  188 gtgaaggatcaattaagttcctcatcggtgaaccactttattccaccgtcagattaaatatgtctataggatttcattacttattaccacactggatctt 287  Q
    |||| ||||||||||||| | |||||||||||||||||||||||||||| |||||||||||||||| | ||||||| ||||||||||||||||| |||||    
T  6942203 gtgagggatcaattaagtccttcatcggtgaaccactttattccaccgttagattaaatatgtctacaagatttcaatacttattaccacactgaatctt 6942302  T
Q  288 tgctccatgtcctttcttctctgtg 312  Q
    ||||||||||||| | |||||||||    
T  6942303 tgctccatgtcctctattctctgtg 6942327  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 219
Target Start/End: Original strand, 44986812 - 44986856
Alignment:
Q  175 ggtgaattctagagtgaaggatcaattaagttcctcatcggtgaa 219  Q
    |||||||||||| |||| ||||||||||||| |||||||||||||    
T  44986812 ggtgaattctagggtgagggatcaattaagtccctcatcggtgaa 44986856  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 224
Target Start/End: Complemental strand, 20606969 - 20606920
Alignment:
Q  175 ggtgaattctagagtgaaggatcaattaagttcctcatcggtgaaccact 224  Q
    |||||||||||| |||| || |||||||||| ||||| ||||||||||||    
T  20606969 ggtgaattctagggtgagggttcaattaagtccctcaccggtgaaccact 20606920  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 224
Target Start/End: Complemental strand, 26847769 - 26847720
Alignment:
Q  175 ggtgaattctagagtgaaggatcaattaagttcctcatcggtgaaccact 224  Q
    |||| |||||||  ||| ||||||||||||||||||| ||||||||||||    
T  26847769 ggtggattctaggatgagggatcaattaagttcctcaccggtgaaccact 26847720  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 224
Target Start/End: Complemental strand, 14527624 - 14527575
Alignment:
Q  175 ggtgaattctagagtgaaggatcaattaagttcctcatcggtgaaccact 224  Q
    |||| ||||||| |||| ||||||||||||| ||||| ||||||||||||    
T  14527624 ggtggattctagggtgagggatcaattaagtccctcaccggtgaaccact 14527575  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 222
Target Start/End: Original strand, 24666128 - 24666176
Alignment:
Q  174 tggtgaattctagagtgaaggatcaattaagttcctcatcggtgaacca 222  Q
    ||||| ||||||| |||| ||||||||||||| ||||| ||||||||||    
T  24666128 tggtggattctagggtgagggatcaattaagtccctcaccggtgaacca 24666176  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 227
Target Start/End: Original strand, 34450815 - 34450867
Alignment:
Q  175 ggtgaattctagagtgaaggatcaattaagttcctcatcggtgaaccacttta 227  Q
    |||||||||||| |||| ||||||||||||| ||||| ||||| | |||||||    
T  34450815 ggtgaattctagggtgagggatcaattaagtccctcaccggtggagcacttta 34450867  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 224
Target Start/End: Original strand, 45393974 - 45394030
Alignment:
Q  168 tttatttggtgaattctagagtgaaggatcaattaagttcctcatcggtgaaccact 224  Q
    ||||| |||||||||||||||||| || ||||||||||  || | ||||||||||||    
T  45393974 tttatatggtgaattctagagtgagggttcaattaagtctcttaccggtgaaccact 45394030  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 227
Target Start/End: Complemental strand, 34809037 - 34808985
Alignment:
Q  175 ggtgaattctagagtgaaggatcaattaagttcctcatcggtgaaccacttta 227  Q
    |||| |||||||||||| || |||||||||| | ||||||||| |||||||||    
T  34809037 ggtggattctagagtgagggttcaattaagtccttcatcggtgtaccacttta 34808985  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 219
Target Start/End: Complemental strand, 47571987 - 47571943
Alignment:
Q  175 ggtgaattctagagtgaaggatcaattaagttcctcatcggtgaa 219  Q
    |||||||||||| |||| ||||||||||||| ||||| |||||||    
T  47571987 ggtgaattctagggtgagggatcaattaagtccctcaccggtgaa 47571943  T

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