View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14376_high_45 (Length: 317)
Name: NF14376_high_45
Description: NF14376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14376_high_45 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 17 - 307
Target Start/End: Complemental strand, 6935068 - 6934778
Alignment:
| Q |
17 |
agaaaggagcttgatctcattcatgacttgatctacactattggtgtctctatgccttatcttctttattgcaacaaactcatcattgtgaagttttcca |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6935068 |
agaaaggagcttgatctcattcatgacttgatctacactattggtgtctctatgccttatcttctttattgcaacaaactcatcattgtgaagttttcca |
6934969 |
T |
|
| Q |
117 |
gcatagactgtaccgaaagccccggttcccagcatatgtttatcagagaaagaatttgtagctttttctatgtctttgtaagcgtagagaggcacaatag |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6934968 |
gcatagactgtaccgaaagccccggttcccagcatatgtttatcagagaaagaatttgtagctttttctatgtctttgtaagcgtagagaggcacaatag |
6934869 |
T |
|
| Q |
217 |
agtttccagcagcttcacgtagtaggcgctttactctggtatgttttctcaaccaagtaaaacggcgcctggcacagtaccatataagaat |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6934868 |
agtttccagcagcttcacgtagtaggcgctttactctggtatgttttctcaaccaagtaaaacggcgcctggcacagtaccatataagaat |
6934778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 17 - 250
Target Start/End: Original strand, 33644831 - 33645064
Alignment:
| Q |
17 |
agaaaggagcttgatctcattcatgacttgatctacactattggtgtctctatgccttatcttctttattgcaacaaactcatcattgtgaagttttcca |
116 |
Q |
| |
|
||||||||||||||| |||||||| ||||| || ||||| ||||||||||||| ||| || || ||||| ||||| || |||||| ||||||| ||||| |
|
|
| T |
33644831 |
agaaaggagcttgatttcattcataacttggtcaacactgttggtgtctctatacctgattttttttatagcaaccaattcatcactgtgaaggtttccg |
33644930 |
T |
|
| Q |
117 |
gcatagactgtaccgaaagccccggttcccagcatatgtttatcagagaaagaatttgtagctttttctatgtctttgtaagcgtagagaggcacaatag |
216 |
Q |
| |
|
|| || || || || |||| |||||||| | | | ||||| || |||||| ||||||| ||||| ||||| |||||||| | |||||||| ||||| |
|
|
| T |
33644931 |
gcgtaaaccgtgccataagcaccggttcctaacctgtgtttttccgagaaaaaatttgtggctttctctatttctttgtagggatagagaggaacaatgt |
33645030 |
T |
|
| Q |
217 |
agtttccagcagcttcacgtagtaggcgctttac |
250 |
Q |
| |
|
|||| || |||||||| | || ||| |||||||| |
|
|
| T |
33645031 |
agttgcctgcagcttctcttaatagacgctttac |
33645064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 196
Target Start/End: Complemental strand, 52109341 - 52109232
Alignment:
| Q |
87 |
gcaacaaactcatcattgtgaagttttccagcatagactgtaccgaaagccccggttcccagcatatgtttatcagagaaagaatttgtagctttttcta |
186 |
Q |
| |
|
|||||| | |||||||||| ||||||||||| ||| |||||||| | || || ||||||| | | ||||| || || ||| |||||| |||||||| | |
|
|
| T |
52109341 |
gcaacatattcatcattgtaaagttttccagaataaactgtaccatatgctcctgttcccaacctttgtttctctgaaaaactatttgtggctttttcga |
52109242 |
T |
|
| Q |
187 |
tgtctttgta |
196 |
Q |
| |
|
|||||||||| |
|
|
| T |
52109241 |
tgtctttgta |
52109232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University