View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14376_high_49 (Length: 309)
Name: NF14376_high_49
Description: NF14376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14376_high_49 |
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Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 13 - 275
Target Start/End: Original strand, 28920714 - 28920976
Alignment:
| Q |
13 |
atccagctcaccactcaatactgcctctcaacactttaattttaacagcaagagtgcannnnnnnnnnnnnaaaacaactaaagcttttgagtaaaacat |
112 |
Q |
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| T |
28920714 |
atccagctcaccactcaatactgcctctcaacactttaattttaacagcaagaatgcagttttttatatttaaaacaactaaagcttttgagtaaaacat |
28920813 |
T |
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| Q |
113 |
tcataatcgtcatttaaccaaattagagtgaaaccttttctttcaaagtatttttcaaatgattaaaatcaatgccacgttttataaatggttttcataa |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
28920814 |
tcataatcgtcatttaaccaaattagagtgaaaccttttctttcaaagtatttttcaaatgattaaaatcaacgccacgttttataaatggttttcataa |
28920913 |
T |
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| Q |
213 |
cagttggcttagaacaacttaagctcaataaggcacaacaacaaatcacatacaccggtgaat |
275 |
Q |
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||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
28920914 |
cagttggcttagaacaatttaagctcaataaggcgcaacaacaaatcacatacaccggtgaat |
28920976 |
T |
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