View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14376_high_5 (Length: 622)

Name: NF14376_high_5
Description: NF14376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14376_high_5
NF14376_high_5
[»] chr4 (1 HSPs)
chr4 (1-612)||(27695934-27696545)
[»] chr1 (18 HSPs)
chr1 (195-415)||(11041012-11041232)
chr1 (142-418)||(10992850-10993126)
chr1 (162-517)||(9242296-9242651)
chr1 (195-433)||(9364477-9364715)
chr1 (288-433)||(9337618-9337763)
chr1 (142-418)||(10930646-10930922)
chr1 (308-415)||(9466636-9466743)
chr1 (195-406)||(8962411-8962622)
chr1 (308-415)||(9300192-9300299)
chr1 (163-612)||(9495179-9495628)
chr1 (351-415)||(11026309-11026373)
chr1 (342-400)||(9233896-9233954)
chr1 (142-259)||(10906922-10907039)
chr1 (319-403)||(8927061-8927145)
chr1 (291-415)||(9257394-9257518)
chr1 (129-169)||(9420409-9420449)
chr1 (348-394)||(10906789-10906835)
chr1 (129-169)||(9437492-9437532)
[»] chr3 (1 HSPs)
chr3 (308-415)||(9171601-9171708)
[»] scaffold0690 (1 HSPs)
scaffold0690 (195-403)||(1716-1924)
[»] chr6 (2 HSPs)
chr6 (291-403)||(15910278-15910390)
chr6 (125-181)||(31201235-31201291)
[»] chr7 (1 HSPs)
chr7 (126-175)||(31608279-31608328)


Alignment Details
Target: chr4 (Bit Score: 580; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 580; E-Value: 0
Query Start/End: Original strand, 1 - 612
Target Start/End: Complemental strand, 27696545 - 27695934
Alignment:
Q  1 ttgcaattctagtgtcttcttctccttctatatcaatttttatatcttcgttgttctctagaagattataaatccattgtggatagtgaacatgattgtt 100  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27696545 ttgcaattctagtgtcttcttctccttctatatcgatttttatatcttcattgttctctagaagattataaatccattgtggatagtgaacatgattgtt 27696446  T
Q  101 attctcagccgtgacatcggttactttccttcctccaaccatttcaagaagcagcatcccataactataaacatctgacttataggatacaacgccaaag 200  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  27696445 attctcatccgtgacatcggttactttccttcctccaaccatttcaagaagcagcatcccataactataaacatctgacttataggatacaatgccaaag 27696346  T
Q  201 tttctagaaaatacctctggcgcaatgtagcccaaagttcccctagccgtggtcattgacacaatacttctttctttggaacaaagtttggccagaccaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||    
T  27696345 tttctagaaaatacctctggcgcaatgtagcccaaagttcccctagccgtggtcattgacacaatacttctttctttggaacaaagttttgccaaaccaa 27696246  T
Q  301 aatcagaaattttaggtgtgaaattgtcgtctagcaatacgttatgaggtttgatatcaaaatggagaattcgtttatcacaaccttgatgaagatactc 400  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27696245 aatcagaaattttgggtgtgaaattgtcgtctagcaatacgttatgaggtttgatatcaaaatggagaattcgtttatcacaaccttgatgaagatactc 27696146  T
Q  401 aattcccttcgctataccaagagaaatgttttgaagcctatcccaacctaaaaagacatccttattgtctgcagatgatatgaaattctgcaacgaacct 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27696145 aattcccttcgctataccaagagaaatgttttgaagcctatcccaacctaaaaagacatccttattgtctgcagatgatatgaaattctgcaacgaacct 27696046  T
Q  501 tttggtaaaaattcatacaccaaggctcgtttgtttccgtctgcacaaaaaccaaccaagcgagccacgttgacgtggtgaatttgacacattgcttcca 600  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27696045 tttggtaaaaattcatacaccaaggctcgtttgtttccatctgcacaaaaaccaaccaagcgagccacgttgacgtggtgaatttgacacattgcttcca 27695946  T
Q  601 tttcattgatga 612  Q
    ||||||||||||    
T  27695945 tttcattgatga 27695934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 2e-23; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 195 - 415
Target Start/End: Complemental strand, 11041232 - 11041012
Alignment:
Q  195 ccaaagtttctagaaaatacctctggcgcaatgtagcccaaagttcccctagccgtggtcattgacacaatacttctttctttggaacaaagtttggcca 294  Q
    |||||||| || ||||| || ||||| |||||||||||||||||||| ||||||| |||||||||||| || ||    ||  | ||||| | ||| || |    
T  11041232 ccaaagttccttgaaaaaacttctggagcaatgtagcccaaagttcctctagccgcggtcattgacactatgctctgatcccttgaacataatttagcta 11041133  T
Q  295 gaccaaaatcagaaattttaggtgtgaaattgtcgtctagcaatacgttatgaggtttgatatcaaaatggagaattcgtttatcacaaccttgatgaag 394  Q
    ||||||||||| | ||||| ||  | || |||| ||| || || || || || || ||||||||||||||||| || |||| ||||||||||||||||||    
T  11041132 gaccaaaatcacatatttttggaataaagttgtggtcaagtaacacattttgtggcttgatatcaaaatggaggatgcgttgatcacaaccttgatgaag 11041033  T
Q  395 atactcaattcccttcgctat 415  Q
    ||| |||||||| || |||||    
T  11041032 atattcaattcctttagctat 11041012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 142 - 418
Target Start/End: Complemental strand, 10993126 - 10992850
Alignment:
Q  142 tttcaagaagcagcatcccataactataaacatctgacttataggatacaacgccaaagtttctagaaaatacctctggcgcaatgtagcccaaagttcc 241  Q
    ||||||| | || ||| |||||||||||||||||||| || || || |||   |||||||| || ||||| || ||||| |||||||| ||||| |||||    
T  10993126 tttcaagcaacatcattccataactataaacatctgatttgtaagacacatttccaaagttccttgaaaaaacttctggagcaatgtaccccaatgttcc 10993027  T
Q  242 cctagccgtggtcattgacacaatacttctttctttggaacaaagtttggccagaccaaaatcagaaattttaggtgtgaaattgtcgtctagcaatacg 341  Q
     ||||| | ||||||||| || |  |||   ||  | ||||| | ||| || |||||||| ||||| ||||| ||  |||| || | ||| || || ||     
T  10993026 tctagctgcggtcattgaaactacgctttggtcccttgaacataatttagctagaccaaagtcagatatttttggaatgaagttatggtcaagtaacaca 10992927  T
Q  342 ttatgaggtttgatatcaaaatggagaattcgtttatcacaaccttgatgaagatactcaattcccttcgctatacc 418  Q
    || || ||||||||||||||||| || || |||| |||||||||||||||||||||||||| ||| || ||||||||    
T  10992926 ttttgtggtttgatatcaaaatgaaggatgcgttgatcacaaccttgatgaagatactcaactcctttagctatacc 10992850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 162 - 517
Target Start/End: Original strand, 9242296 - 9242651
Alignment:
Q  162 taactataaacatctgacttataggatacaacgccaaagtttctagaaaatacctctggcgcaatgtagcccaaagttcccctagccgtggtcattgaca 261  Q
    ||||| || ||||| |||||||| || |||   ||||| ||||||||||| || || || || |||||||| |  |||||| ||||||  ||||| || |    
T  9242296 taactgtatacatcggacttataagagacatttccaaaatttctagaaaaaacttcaggtgccatgtagcctactgttcccttagccgcagtcatggata 9242395  T
Q  262 caatacttctttctttggaacaaagtttggccagaccaaaatcagaaattttaggtgtgaaattgtcgtctagcaatacgttatgaggtttgatatcaaa 361  Q
    ||||||||   | ||| ||||| |  ||||||| ||||||||| | |||||  ||  |||||||||| |||| ||| || |||| ||| ||||| |||||    
T  9242396 caatactttgatttttcgaacacatcttggccaaaccaaaatctgtaatttggggaatgaaattgtcatctaacaagacattattaggattgatgtcaaa 9242495  T
Q  362 atggagaattcgtttatcacaaccttgatgaagatactcaattcccttcgctataccaagagaaatgttttgaagcctatcccaacctaaaaagacatcc 461  Q
     || ||||||| || |||||||||||| || ||||||||||| || || |||||||| |||| ||| ||||| | | ||||||| || |  ||  ||||     
T  9242496 gtgtagaattctttgatcacaaccttggtggagatactcaatgccattggctatacctagagcaattttttgcaacttatcccatccaaggaaatcatct 9242595  T
Q  462 ttattgtctgcagatgatatgaaattctgcaacgaaccttttggtaaaaattcata 517  Q
    || |||| ||  || || ||||| |||||||||||||| ||||| ||||| |||||    
T  9242596 ttgttgtttggggaagaaatgaatttctgcaacgaaccatttgggaaaaagtcata 9242651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 195 - 433
Target Start/End: Complemental strand, 9364715 - 9364477
Alignment:
Q  195 ccaaagtttctagaaaatacctctggcgcaatgtagcccaaagttcccctagccgtggtcattgacacaatacttctttctttggaacaaagtttggcca 294  Q
    ||||||||||| ||||| || || || || |||||||| || |||||| |||| |  ||||| || || ||||||   | ||| ||||| |  |||||||    
T  9364715 ccaaagtttcttgaaaaaacttcaggtgccatgtagcctaatgttcccttagctgcagtcatggatacgatactttgattttttgaacatatcttggcca 9364616  T
Q  295 gaccaaaatcagaaattttaggtgtgaaattgtcgtctagcaatacgttatgaggtttgatatcaaaatggagaattcgtttatcacaaccttgatgaag 394  Q
     ||||||||| | |||||| || ||||||||||| |||| ||| || |||||||| ||||| ||||| || ||||||| || |||||||||||| || ||    
T  9364615 aaccaaaatctgtaattttgggagtgaaattgtcatctaacaagacattatgaggattgatgtcaaagtgtagaattctttgatcacaaccttggtggag 9364516  T
Q  395 atactcaattcccttcgctataccaagagaaatgttttg 433  Q
    ||||||||| || || ||||| || |||| ||| |||||    
T  9364515 atactcaataccatttgctatgcctagagcaattttttg 9364477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 288 - 433
Target Start/End: Complemental strand, 9337763 - 9337618
Alignment:
Q  288 ttggccagaccaaaatcagaaattttaggtgtgaaattgtcgtctagcaatacgttatgaggtttgatatcaaaatggagaattcgtttatcacaacctt 387  Q
    ||||||| ||||||||| | |||||| || ||||||||||| |||| ||| || |||||||| ||||| ||||| || ||||||| || |||||||||||    
T  9337763 ttggccaaaccaaaatctgtaattttgggagtgaaattgtcatctaacaagacattatgaggattgatgtcaaagtgtagaattctttgatcacaacctt 9337664  T
Q  388 gatgaagatactcaattcccttcgctataccaagagaaatgttttg 433  Q
    | || ||||||||||| || || ||||| || |||| ||| |||||    
T  9337663 ggtggagatactcaataccatttgctatgcctagagcaattttttg 9337618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 142 - 418
Target Start/End: Complemental strand, 10930922 - 10930646
Alignment:
Q  142 tttcaagaagcagcatcccataactataaacatctgacttataggatacaacgccaaagtttctagaaaatacctctggcgcaatgtagcccaaagttcc 241  Q
    ||||||| | || ||| |||||||||||||||||||| || || || |||   |||||||| || || || || ||||| ||||||||||||||||||||    
T  10930922 tttcaagcaacatcattccataactataaacatctgatttgtaagacacatttccaaagttccttgagaaaacttctggagcaatgtagcccaaagttcc 10930823  T
Q  242 cctagccgtggtcattgacacaatacttctttctttggaacaaagtttggccagaccaaaatcagaaattttaggtgtgaaattgtcgtctagcaatacg 341  Q
     ||||| |  ||||||||||| || |||   ||  | ||||| | ||| || |||||||| ||||| || || ||  | || || | ||| || || ||     
T  10930822 tctagctgctgtcattgacactatgctttggtcccttgaacataatttagctagaccaaagtcagatatctttggaataaagttatggtcaagtaacaca 10930723  T
Q  342 ttatgaggtttgatatcaaaatggagaattcgtttatcacaaccttgatgaagatactcaattcccttcgctatacc 418  Q
    || || ||||||||||| |||||||  || ||||  ||||||||||||||||||||||||| ||| || ||||||||    
T  10930722 ttttgtggtttgatatcgaaatggacgatgcgttggtcacaaccttgatgaagatactcaactcctttagctatacc 10930646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 308 - 415
Target Start/End: Original strand, 9466636 - 9466743
Alignment:
Q  308 aattttaggtgtgaaattgtcgtctagcaatacgttatgaggtttgatatcaaaatggagaattcgtttatcacaaccttgatgaagatactcaattccc 407  Q
    |||||| || |||||||| || |||| ||| || |||||||| ||||| ||||| || ||||||| || |||||||||||| |||||||||||||||||     
T  9466636 aattttgggagtgaaattctcatctaacaagacattatgaggattgatgtcaaagtgaagaattctttgatcacaaccttggtgaagatactcaattcca 9466735  T
Q  408 ttcgctat 415  Q
    || |||||    
T  9466736 ttggctat 9466743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 195 - 406
Target Start/End: Complemental strand, 8962622 - 8962411
Alignment:
Q  195 ccaaagtttctagaaaatacctctggcgcaatgtagcccaaagttcccctagccgtggtcattgacacaatacttctttctttggaacaaagtttggcca 294  Q
    |||||||||| ||||||||| || || || ||||| || || |||||||||||||  ||||| || |||||| ||   | |||||| || |  ||||| |    
T  8962622 ccaaagtttcgagaaaatacttcaggtgccatgtatcctaatgttcccctagccgcagtcatcgatacaatagtttgatttttggagcacaacttggcta 8962523  T
Q  295 gaccaaaatcagaaattttaggtgtgaaattgtcgtctagcaatacgttatgaggtttgatatcaaaatggagaattcgtttatcacaaccttgatgaag 394  Q
     |||||| || || ||||| || || |||||||| |||| ||| |  || || || |||||||||||||| ||||||| || |||||| || || |||||    
T  8962522 aaccaaagtctgatatttttggagtaaaattgtcatctaacaagatattgtgcggattgatatcaaaatgaagaattctttgatcacagccctggtgaag 8962423  T
Q  395 atactcaattcc 406  Q
    ||||||||||||    
T  8962422 atactcaattcc 8962411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 308 - 415
Target Start/End: Complemental strand, 9300299 - 9300192
Alignment:
Q  308 aattttaggtgtgaaattgtcgtctagcaatacgttatgaggtttgatatcaaaatggagaattcgtttatcacaaccttgatgaagatactcaattccc 407  Q
    |||||| || || |||||||| || | ||| ||||||||||| ||||| ||||| || ||||||| || |||||||||||| ||||||||||| |||||     
T  9300299 aatttttggggttaaattgtcatcgatcaagacgttatgaggattgatgtcaaagtgaagaattctttgatcacaaccttggtgaagatactctattcca 9300200  T
Q  408 ttcgctat 415  Q
    || |||||    
T  9300199 ttggctat 9300192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 163 - 612
Target Start/End: Complemental strand, 9495628 - 9495179
Alignment:
Q  163 aactataaacatctgacttataggatacaacgccaaagtttctagaaaatacctctggcgcaatgtagcccaaagttcccctagccgtggtcattgacac 262  Q
    ||||||||||||| ||||| || || |||   |||||||| ||||| || || ||||| || ||||| || | ||| |||||||||| |||||| || ||    
T  9495628 aactataaacatcagacttgtacgacacatttccaaagttcctagagaaaacttctggtgctatgtaaccaatagtccccctagccgcggtcatggaaac 9495529  T
Q  263 aatacttctttctttggaacaaagtttggccagaccaaaatcagaaattttaggtgtgaaattgtcgtctagcaatacgttatgaggtttgatatcaaaa 362  Q
       ||||   || || |||||||| || ||||||||||||||||| || || || ||||| || | ||| || || |  ||||||||||| ||||||||     
T  9495528 cgcactttgatcctttgaacaaagcttagccagaccaaaatcagatatcttgggagtgaagttattgtcaagtaagatattatgaggttttatatcaaag 9495429  T
Q  363 tggagaattcgtttatcacaaccttgatgaagatactcaattcccttcgctataccaagagaaatgttttgaagcctatcccaacctaaaaagacatcct 462  Q
    || || || |  |  ||||| ||||||||||||||||||||||| |||||||| ||||| | ||| | ||| | | | |||||||  ||||||   |  |    
T  9495428 tgaagtatcctctggtcacatccttgatgaagatactcaattcctttcgctattccaagcgcaatttcttgtaacttctcccaactcaaaaagtggtttt 9495329  T
Q  463 tattgtctgcagatgatatgaaattctgcaacgaaccttttggtaaaaattcatacaccaaggctcgtttgtttccgtctgcacaaaaaccaaccaagcg 562  Q
    |    || |  |  || ||||| |||||||||||||| ||||||||| | || ||||| |  |||||| ||| ||| || |||||||| ||||| ||| |    
T  9495328 tgaaatccgttgtggaaatgaatttctgcaacgaaccatttggtaaatactcgtacacaagagctcgtgtgtgtccatcggcacaaaagccaactaagtg 9495229  T
Q  563 agccacgttgacgtggtgaatttgacacattgcttccatttcattgatga 612  Q
    | | || |||||||| |||||||||| ||||| | | | |||||||||||    
T  9495228 aacaacattgacgtgatgaatttgactcattgttcctacttcattgatga 9495179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 351 - 415
Target Start/End: Complemental strand, 11026373 - 11026309
Alignment:
Q  351 ttgatatcaaaatggagaattcgtttatcacaaccttgatgaagatactcaattcccttcgctat 415  Q
    |||||||| |||||||| || |||| ||||||||||||||||||||| |||||||| || |||||    
T  11026373 ttgatatcgaaatggaggatgcgttgatcacaaccttgatgaagatattcaattcctttagctat 11026309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 342 - 400
Target Start/End: Complemental strand, 9233954 - 9233896
Alignment:
Q  342 ttatgaggtttgatatcaaaatggagaattcgtttatcacaaccttgatgaagatactc 400  Q
    |||||||| |||||||||||||| |||||| |  |||||||||||||||| ||||||||    
T  9233954 ttatgaggcttgatatcaaaatgtagaatttgcatatcacaaccttgatgcagatactc 9233896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 142 - 259
Target Start/End: Complemental strand, 10907039 - 10906922
Alignment:
Q  142 tttcaagaagcagcatcccataactataaacatctgacttataggatacaacgccaaagtttctagaaaatacctctggcgcaatgtagcccaaagttcc 241  Q
    ||||||| | || ||| |||||||||||||||||||| || || || |||   |||||||| || ||||| || ||||| |||||||| ||||| |||||    
T  10907039 tttcaagcaacatcattccataactataaacatctgatttgtaagacacatttccaaagttccttgaaaaaacttctggagcaatgtaccccaatgttcc 10906940  T
Q  242 cctagccgtggtcattga 259  Q
     ||||| | |||||||||    
T  10906939 tctagctgcggtcattga 10906922  T

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Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 319 - 403
Target Start/End: Complemental strand, 8927145 - 8927061
Alignment:
Q  319 tgaaattgtcgtctagcaatacgttatgaggtttgatatcaaaatggagaattcgtttatcacaaccttgatgaagatactcaat 403  Q
    |||||||||| |||| ||| || || || || ||||||||||| || |||||||  | |||||||||||| ||||||||||||||    
T  8927145 tgaaattgtcatctaacaagacattgtggggattgatatcaaagtgaagaattctatgatcacaaccttggtgaagatactcaat 8927061  T

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Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 291 - 415
Target Start/End: Original strand, 9257394 - 9257518
Alignment:
Q  291 gccagaccaaaatcagaaattttaggtgtgaaattgtcgtctagcaatacgttatgaggtttgatatcaaaatggagaattcgtttatcacaaccttgat 390  Q
    |||| ||||||||  | |||||| || || |||||||| || | ||| || |||||||| ||||| ||||| || ||||||| || |||||||| ||| |    
T  9257394 gccaaaccaaaatttgtaatttttggggttaaattgtcatcgatcaagacattatgaggattgatgtcaaagtgaagaattctttgatcacaactttggt 9257493  T
Q  391 gaagatactcaattcccttcgctat 415  Q
    |||||||||| ||||| || |||||    
T  9257494 gaagatactcgattccattggctat 9257518  T

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Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 129 - 169
Target Start/End: Original strand, 9420409 - 9420449
Alignment:
Q  129 cttcctccaaccatttcaagaagcagcatcccataactata 169  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  9420409 cttcctccaaccatttcaagaagtaacatcccataactata 9420449  T

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Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 348 - 394
Target Start/End: Complemental strand, 10906835 - 10906789
Alignment:
Q  348 ggtttgatatcaaaatggagaattcgtttatcacaaccttgatgaag 394  Q
    ||||||||||||||||| || || |||| ||||||||||||||||||    
T  10906835 ggtttgatatcaaaatgaaggatgcgttgatcacaaccttgatgaag 10906789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 129 - 169
Target Start/End: Original strand, 9437492 - 9437532
Alignment:
Q  129 cttcctccaaccatttcaagaagcagcatcccataactata 169  Q
    |||||||||||||||||||| || | |||||||||||||||    
T  9437492 cttcctccaaccatttcaagcagtaacatcccataactata 9437532  T

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Target: chr3 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 308 - 415
Target Start/End: Complemental strand, 9171708 - 9171601
Alignment:
Q  308 aattttaggtgtgaaattgtcgtctagcaatacgttatgaggtttgatatcaaaatggagaattcgtttatcacaaccttgatgaagatactcaattccc 407  Q
    |||||| || ||||||||||| ||||| || ||||||||||| || || ||||| || ||||||| || |||||||||||| || ||||||||||||||     
T  9171708 aatttttggggtgaaattgtcatctagtaagacgttatgaggattaatgtcaaagtgaagaattctttgatcacaaccttggtgcagatactcaattcca 9171609  T
Q  408 ttcgctat 415  Q
    || |||||    
T  9171608 ttggctat 9171601  T

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Target: scaffold0690 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0690
Description:

Target: scaffold0690; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 195 - 403
Target Start/End: Complemental strand, 1924 - 1716
Alignment:
Q  195 ccaaagtttctagaaaatacctctggcgcaatgtagcccaaagttcccctagccgtggtcattgacacaatacttctttctttggaacaaagtttggcca 294  Q
    ||||| ||||||||||| || || || || |||||||| || |||||| |||| || ||||| || ||| |||||   | ||| ||||| |  || ||||    
T  1924 ccaaaatttctagaaaaaacttcaggtgccatgtagcctaatgttcccttagctgtagtcatggatacattactttgatttttcgaacacatcttagcca 1825  T
Q  295 gaccaaaatcagaaattttaggtgtgaaattgtcgtctagcaatacgttatgaggtttgatatcaaaatggagaattcgtttatcacaaccttgatgaag 394  Q
     ||||||||| |  ||||| || ||||||||||| |||||||| |  |||||||| ||||| ||||| || | ||||| || |||||||||||| || ||    
T  1824 aaccaaaatctgtgattttgggagtgaaattgtcatctagcaagatattatgaggattgatgtcaaagtgtaaaattctttgatcacaaccttggtggag 1725  T
Q  395 atactcaat 403  Q
    |||||||||    
T  1724 atactcaat 1716  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 291 - 403
Target Start/End: Original strand, 15910278 - 15910390
Alignment:
Q  291 gccagaccaaaatcagaaattttaggtgtgaaattgtcgtctagcaatacgttatgaggtttgatatcaaaatggagaattcgtttatcacaaccttgat 390  Q
    |||| ||||||||| |  ||||| || ||||||||||| |||||||| |  |||||||| ||||| ||||| || | ||||| || |||||||||||| |    
T  15910278 gccaaaccaaaatctgtgattttgggagtgaaattgtcatctagcaagatattatgaggattgatgtcaaagtgtaaaattctttgatcacaaccttggt 15910377  T
Q  391 gaagatactcaat 403  Q
    | |||||||||||    
T  15910378 ggagatactcaat 15910390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 125 - 181
Target Start/End: Original strand, 31201235 - 31201291
Alignment:
Q  125 tttccttcctccaaccatttcaagaagcagcatcccataactataaacatctgactt 181  Q
    |||||| |||||||||||||| || | || ||| ||||||||||||||||| |||||    
T  31201235 tttcctccctccaaccatttccagcaacatcattccataactataaacatcggactt 31201291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 126 - 175
Target Start/End: Original strand, 31608279 - 31608328
Alignment:
Q  126 ttccttcctccaaccatttcaagaagcagcatcccataactataaacatc 175  Q
    ||||||||||||| ||||||||||| || ||| ||||||||||| |||||    
T  31608279 ttccttcctccaatcatttcaagaatcaacatgccataactatatacatc 31608328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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