View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14376_high_52 (Length: 300)

Name: NF14376_high_52
Description: NF14376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14376_high_52
NF14376_high_52
[»] scaffold0928 (2 HSPs)
scaffold0928 (19-182)||(2788-2955)
scaffold0928 (248-285)||(3020-3057)
[»] chr6 (2 HSPs)
chr6 (19-182)||(5312515-5312682)
chr6 (248-285)||(5312747-5312784)
[»] chr3 (5 HSPs)
chr3 (19-182)||(54753838-54754005)
chr3 (19-182)||(29516159-29516326)
chr3 (19-179)||(53345214-53345372)
chr3 (248-285)||(54754070-54754107)
chr3 (248-285)||(53345099-53345136)
[»] chr7 (2 HSPs)
chr7 (19-182)||(9147469-9147636)
chr7 (248-285)||(9147364-9147401)
[»] chr2 (1 HSPs)
chr2 (75-177)||(23455123-23455230)


Alignment Details
Target: scaffold0928 (Bit Score: 143; Significance: 4e-75; HSPs: 2)
Name: scaffold0928
Description:

Target: scaffold0928; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 19 - 182
Target Start/End: Original strand, 2788 - 2955
Alignment:
Q  19 ccaacgcccaacataggcttcaagatttaa----aggcacaactaaaatatggaattaaatatcttctggaaatctgttgtaccactattttgttacatc 114  Q
    ||||||||||||||||||||||||||||||    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  2788 ccaacgcccaacataggcttcaagatttaattaaaggcacaactaaaatatggaattacatatcttctggaaatctgttgtaccactattttgttacatc 2887  T
Q  115 tctctttgattgggacatgagatgacagttactaccatggagaagataacaaaagcatttccctcctt 182  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  2888 tctctttgattgggacatgaggtgacagttactaccatggagaagataacaaaagcatttccctcctt 2955  T

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Target: scaffold0928; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 248 - 285
Target Start/End: Original strand, 3020 - 3057
Alignment:
Q  248 tagaatagttcttcgaaaaattcattcatcaatctctg 285  Q
    ||||||||||||||||||||||||||||||||||||||    
T  3020 tagaatagttcttcgaaaaattcattcatcaatctctg 3057  T

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Target: chr6 (Bit Score: 143; Significance: 4e-75; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 19 - 182
Target Start/End: Original strand, 5312515 - 5312682
Alignment:
Q  19 ccaacgcccaacataggcttcaagatttaa----aggcacaactaaaatatggaattaaatatcttctggaaatctgttgtaccactattttgttacatc 114  Q
    ||||||||||||||||||||||||||||||    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  5312515 ccaacgcccaacataggcttcaagatttaattaaaggcacaactaaaatatggaattacatatcttctggaaatctgttgtaccactattttgttacatc 5312614  T
Q  115 tctctttgattgggacatgagatgacagttactaccatggagaagataacaaaagcatttccctcctt 182  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  5312615 tctctttgattgggacatgaggtgacagttactaccatggagaagataacaaaagcatttccctcctt 5312682  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 248 - 285
Target Start/End: Original strand, 5312747 - 5312784
Alignment:
Q  248 tagaatagttcttcgaaaaattcattcatcaatctctg 285  Q
    ||||||||||||||||||||||||||||||||||||||    
T  5312747 tagaatagttcttcgaaaaattcattcatcaatctctg 5312784  T

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Target: chr3 (Bit Score: 143; Significance: 4e-75; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 19 - 182
Target Start/End: Original strand, 54753838 - 54754005
Alignment:
Q  19 ccaacgcccaacataggcttcaagatttaa----aggcacaactaaaatatggaattaaatatcttctggaaatctgttgtaccactattttgttacatc 114  Q
    ||||||||||||||||||||||||||||||    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  54753838 ccaacgcccaacataggcttcaagatttaattaaaggcacaactaaaatatggaattacatatcttctggaaatctgttgtaccactattttgttacatc 54753937  T
Q  115 tctctttgattgggacatgagatgacagttactaccatggagaagataacaaaagcatttccctcctt 182  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  54753938 tctctttgattgggacatgaggtgacagttactaccatggagaagataacaaaagcatttccctcctt 54754005  T

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Target: chr3; HSP #2
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 19 - 182
Target Start/End: Complemental strand, 29516326 - 29516159
Alignment:
Q  19 ccaacgcccaacataggcttcaagatttaa----aggcacaactaaaatatggaattaaatatcttctggaaatctgttgtaccactattttgttacatc 114  Q
    ||||||||||||||||||||||||||||||    |||||||||||||||||| ||||| ||| |||||| |||||| |||||||||||||||||||||||    
T  29516326 ccaacgcccaacataggcttcaagatttaattaaaggcacaactaaaatatgaaattacataccttctgaaaatcttttgtaccactattttgttacatc 29516227  T
Q  115 tctctttgattgggacatgagatgacagttactaccatggagaagataacaaaagcatttccctcctt 182  Q
    ||||  ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  29516226 tctccatgattgggacatgaggtgacagttactaccatggagaagataacaaaagcatttccctcctt 29516159  T

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Target: chr3; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 19 - 179
Target Start/End: Complemental strand, 53345372 - 53345214
Alignment:
Q  19 ccaacgcccaacataggcttcaagatttaa----aggcacaactaaaatatggaattaaatatcttctggaaatctgttgtaccactattttgttacatc 114  Q
    ||||||||||||||||||||||||||||||    |||||||||||||||||||||||| |||||||||       |||| ||||||||||||||||||||    
T  53345372 ccaacgcccaacataggcttcaagatttaattaaaggcacaactaaaatatggaattacatatcttctt------tgttataccactattttgttacatc 53345279  T
Q  115 tctctttgattgggacatgagatgacagttactaccatggagaagataacaaaagcatttccctc 179  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||    
T  53345278 tctctttgattgggacatgaggtgacagttactaccatggagaagataacaaaggcatttccctc 53345214  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 248 - 285
Target Start/End: Original strand, 54754070 - 54754107
Alignment:
Q  248 tagaatagttcttcgaaaaattcattcatcaatctctg 285  Q
    ||||||||||||||||||||||||||||||||||||||    
T  54754070 tagaatagttcttcgaaaaattcattcatcaatctctg 54754107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 248 - 285
Target Start/End: Complemental strand, 53345136 - 53345099
Alignment:
Q  248 tagaatagttcttcgaaaaattcattcatcaatctctg 285  Q
    |||||||||||| |||||||||||||||||||||||||    
T  53345136 tagaatagttctccgaaaaattcattcatcaatctctg 53345099  T

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Target: chr7 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 19 - 182
Target Start/End: Complemental strand, 9147636 - 9147469
Alignment:
Q  19 ccaacgcccaacataggcttcaagattt----aaaggcacaactaaaatatggaattaaatatcttctggaaatctgttgtaccactattttgttacatc 114  Q
    ||||||||||||||||||||||||||||    |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||    
T  9147636 ccaacgcccaacataggcttcaagatttgattaaaggcacaactaaaatatggaattacatatcttctggaaatctggtgtaccactattttgttacatc 9147537  T
Q  115 tctctttgattgggacatgagatgacagttactaccatggagaagataacaaaagcatttccctcctt 182  Q
    ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  9147536 tctctttgattgggacatgaggtgacagttactaccatcgagaagataacaaaagcatttccctcctt 9147469  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 248 - 285
Target Start/End: Complemental strand, 9147401 - 9147364
Alignment:
Q  248 tagaatagttcttcgaaaaattcattcatcaatctctg 285  Q
    ||||||||||||||||||||||||||||||||||||||    
T  9147401 tagaatagttcttcgaaaaattcattcatcaatctctg 9147364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 75 - 177
Target Start/End: Complemental strand, 23455230 - 23455123
Alignment:
Q  75 tatcttctggaaatctgttgtaccactattttgttacatctctctttgattgggac-----atgagatgacagttactaccatggagaagataacaaaag 169  Q
    ||||||||||| ||| || |||||||||||| ||| |||||||||||| |||||||      |||| |||  ||||||||| ||||||||||||||||||    
T  23455230 tatcttctggatatccgtcgtaccactatttcgttgcatctctctttggttgggacttgagttgaggtgatggttactaccttggagaagataacaaaag 23455131  T
Q  170 catttccc 177  Q
    | ||||||    
T  23455130 cctttccc 23455123  T

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