View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14376_high_53 (Length: 285)
Name: NF14376_high_53
Description: NF14376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14376_high_53 |
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Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 20 - 266
Target Start/End: Complemental strand, 25601599 - 25601353
Alignment:
| Q |
20 |
tgttaagcactgaatcagaacaaaaacaatgtaattatattgtgcaataggattgattatagagcaagattccaatcctaattaaaatctagaatgtatt |
119 |
Q |
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| T |
25601599 |
tgttaagcactgaatcagaacaaaaacaatgtaattatattgtgcaataagattgattatagagcaagattccaatcctaattaaaatctagaatgtatt |
25601500 |
T |
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| Q |
120 |
tttaagtatgaagtagaataataattaaaaatttaggggtaaaggaaataattggaatgtgaaataccttggcgcaccagtttcttagcacatagaactt |
219 |
Q |
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| T |
25601499 |
tttaagtatgaagtagaataataattaaaaatttaggggtaaaggaaataattggaatgtgaaataccttggcgcaccagtttcttagcacatagaactt |
25601400 |
T |
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| Q |
220 |
acagtctagtttcttagcacaaccgcgacccaccagtttcgttcttc |
266 |
Q |
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| T |
25601399 |
acagtctagtttcttagcacaaccgcgacacaccagtttcgttcttc |
25601353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 105 - 165
Target Start/End: Complemental strand, 25596706 - 25596646
Alignment:
| Q |
105 |
aatctagaatgtatttttaagtatgaagtagaataataattaaaaatttaggggtaaagga |
165 |
Q |
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| T |
25596706 |
aatcttgaatgtattttgaagtatgaagtaggataataattaaaaatataaggggaaagga |
25596646 |
T |
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