View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14376_high_56 (Length: 269)
Name: NF14376_high_56
Description: NF14376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14376_high_56 |
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Alignment Details
Target: chr8 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 18 - 267
Target Start/End: Complemental strand, 44882832 - 44882583
Alignment:
| Q |
18 |
acagaacttcacagcgagtataattcgactcggagaacattgtgtcgcatgatattgagggttgattggacttcctgttcattctttagtgattaattat |
117 |
Q |
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| T |
44882832 |
acagaacttcacagcaagtataattcgacttggagaacattgtgtcgcatgatattgagggttgattggacttcctgttcattctttagtgattaattat |
44882733 |
T |
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| Q |
118 |
atatcagattgagatcttccttctgaaaaactaaggcctctgactattatctatatgaatgtgaatctaatgtaagatcatatatttcagtctagtttct |
217 |
Q |
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| T |
44882732 |
atatcagattgagatcttccttctgaaaaactaaggcctctgactattatctatatgaatgtgaatctaatgtaagatcatatatttcagtctagtttct |
44882633 |
T |
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| Q |
218 |
gtcacgccattatctatgacaataatccagttcaataaggcaagctactg |
267 |
Q |
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| T |
44882632 |
gtcacgccattatctatgacaataatccagttcaataaggcaagctactg |
44882583 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 5e-25; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 125 - 215
Target Start/End: Original strand, 8994742 - 8994831
Alignment:
| Q |
125 |
attgagatcttccttctgaaaaactaaggcctctgactattatctatatgaatgtgaatctaatgtaagatcatatatttcagtctagttt |
215 |
Q |
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| T |
8994742 |
attgagatcttctttctgaaaaactaaagtctctgactattatctatatgaaagtgaatccaatgtatgatcatata-ttcagtctagttt |
8994831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 60 - 211
Target Start/End: Original strand, 9007491 - 9007632
Alignment:
| Q |
60 |
tgtcgcatgatattgagggttgattggacttcctgttcattctttagtgattaattatatatcagattgagatcttccttctgaaaaactaaggcctctg |
159 |
Q |
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| T |
9007491 |
tgtcgcatgatattgagggttggttggactgcttgttaattttttagtgattaatgc-atat------gagatcttctttttgaaaaactaaagtctctg |
9007583 |
T |
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| Q |
160 |
actattatctatatgaatgtgaatctaatgtaagatcatatatttcagtcta |
211 |
Q |
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| T |
9007584 |
a--attatctagatgaa-gtgaatctaatgtatgatcatatatttcagtcta |
9007632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 60 - 110
Target Start/End: Original strand, 9019877 - 9019927
Alignment:
| Q |
60 |
tgtcgcatgatattgagggttgattggacttcctgttcattctttagtgat |
110 |
Q |
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| T |
9019877 |
tgtcgcatgatattgagggtttattagacttcctgttcactctttagtgat |
9019927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 114
Target Start/End: Original strand, 9029388 - 9029442
Alignment:
| Q |
60 |
tgtcgcatgatattgagggttgattggacttcctgttcattctttagtgattaat |
114 |
Q |
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| T |
9029388 |
tgtcgcatgatattgagggttgaatggaattcttgttcactttttagtgattaat |
9029442 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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