View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14376_high_57 (Length: 264)
Name: NF14376_high_57
Description: NF14376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14376_high_57 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 19 - 254
Target Start/End: Complemental strand, 34939969 - 34939734
Alignment:
| Q |
19 |
atctactgtgtgcactggatgctattagcattgtannnnnnnnnaatcattgggtgtttgtcttacttcccaaaacatggcgtaagtaaactcattttac |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34939969 |
atctactgtgtgcactggatgctattagcattgtatttttttttaatcattgggtgtttgtcttacttcccaaaacatggcgtaagtaaactcattttac |
34939870 |
T |
|
| Q |
119 |
ctgatctacgtaaattcaatttgtgtagcctttgcaaactcagtttacgcgggctatgtaagtcgagtagagttaaattaccttatgtcaatttattgaa |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
34939869 |
ctgatctacgtaaattcaatttgtgtagcctttgcaaactcagtttacgcgggctatgtaagtcgagtagagttaaattaccttgtgtcaatttattgaa |
34939770 |
T |
|
| Q |
219 |
acttagattacatatacttacatgttttatattcat |
254 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| |
|
|
| T |
34939769 |
acttagattacatatgcttacatgttttatattcat |
34939734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University