View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14376_high_60 (Length: 255)
Name: NF14376_high_60
Description: NF14376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14376_high_60 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 19 - 243
Target Start/End: Complemental strand, 37902822 - 37902598
Alignment:
| Q |
19 |
acatcaccaactccccaggtattttgcattttatttatcaaatgggctcatcatatctagtttggttttttgttcttcacttgttgaagcatttgttcca |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37902822 |
acatcaccaactccccaggtattttgcattttatttatcaaatgggctcatcatatctagtttggttttttgttcttcacttgttgaagcatttgttcca |
37902723 |
T |
|
| Q |
119 |
agttatcataattgcacaattcaattgaagtttgaacttcttgtctttgaaactgagttgttcatattctattttctatatattacggggatgaaaatgg |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37902722 |
agttatcataattgcacaattcaattgaagtttgaacttcttgtctttgaaactgagttgttcatattctattttctatatattacggggatgaaaatgg |
37902623 |
T |
|
| Q |
219 |
aaaatgagatctttgttctgtgttg |
243 |
Q |
| |
|
||||||||||||||||| ||||||| |
|
|
| T |
37902622 |
aaaatgagatctttgttttgtgttg |
37902598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 19 - 243
Target Start/End: Complemental strand, 37909333 - 37909109
Alignment:
| Q |
19 |
acatcaccaactccccaggtattttgcattttatttatcaaatgggctcatcatatctagtttggttttttgttcttcacttgttgaagcatttgttcca |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37909333 |
acatcaccaactccccaggtattttgcattttatttatcaaatgggctcatcatatctagtttggttttttgttcttcacttgttgaagcatttgttcca |
37909234 |
T |
|
| Q |
119 |
agttatcataattgcacaattcaattgaagtttgaacttcttgtctttgaaactgagttgttcatattctattttctatatattacggggatgaaaatgg |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37909233 |
agttatcataattgcacaattcaattgaagtttgaacttcttgtctttgaaactgagttgttcatattctattttctatatattacggggatgaaaatgg |
37909134 |
T |
|
| Q |
219 |
aaaatgagatctttgttctgtgttg |
243 |
Q |
| |
|
||||||||||||||||| ||||||| |
|
|
| T |
37909133 |
aaaatgagatctttgttttgtgttg |
37909109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University